Hi Hsiang-Yuan,

That's because the header information is different. You can do the following:

>> mri_vol2vol --mov Yeo2011Parcellation.nii.gz --targ FSL_MNI2mm_template.nii.gz --regheader --nearest --o Yeo2011_FSL2mm.nii.gz

The output file "Yeo2011_FSL2mm.nii.gz" should have an orientation
compatible with mricron. Can you let me know if this works.

Thanks,
Thomas

On Mon, Jul 4, 2016 at 12:58 AM, Hsiang-Yuan Lin <louislin28@gmail.com> wrote:
> Hi Prof. Yeo,
>
> I have problems utilizing yeo 7/17 cortical network parcellation maps as
> templates in MRIcron (I aim to use your cortical parcellation maps to
> underlay my findings in order to derive the implications based on iFC
> networks). To be specific, there is an orientation problem in the current
> version of parcellation maps in MNI space.
>
> Thank you for your help in advance.
>
> Best,
> Hsiang-Yuan
>
> --
> Hsiang-Yuan Lin, M.D.
> Attending Psychiatrist & Adjunct Lecturer
> Department of Psychiatry & Child Mental Health Center
> National Taiwan University Hospital and College of Medicine
> email: louislin28@gmail.com
> CV:
> https://drive.google.com/file/d/0B3jQGSXih2aeY2o1QnJwUVJjU1U/view?usp=sharing
> https://www.researchgate.net/profile/Hsiang_Yuan_Lin2
>
>
>
> --
> Hsiang-Yuan Lin, M.D.
> Attending Psychiatrist & Adjunct Lecturer
> Department of Psychiatry & Child Mental Health Center
> National Taiwan University Hospital and College of Medicine
> email: louislin28@gmail.com
> CV:
> https://drive.google.com/file/d/0B3jQGSXih2aeY2o1QnJwUVJjU1U/view?usp=sharing
> https://www.researchgate.net/profile/Hsiang_Yuan_Lin2