#-------------------------------------------- #@# Hippocampal Subfields processing (T1 only) left fre 10 feb 2017 09:15:37 CET ------------------------------------------ Setting up environment variables --- LD_LIBRARY_PATH is .:/usr/local/freesurfer-6.0.0/MCRv80/runtime/glnxa64:/usr/local/freesurfer-6.0.0/MCRv80/bin/glnxa64:/usr/local/freesurfer-6.0.0/MCRv80/sys/os/glnxa64:/usr/local/freesurfer-6.0.0/MCRv80/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/usr/local/freesurfer-6.0.0/MCRv80/sys/java/jre/glnxa64/jre/lib/amd64/server:/usr/local/freesurfer-6.0.0/MCRv80/sys/java/jre/glnxa64/jre/lib/amd64/client:/usr/local/freesurfer-6.0.0/MCRv80/sys/java/jre/glnxa64/jre/lib/amd64: Warning: application is running on a locale different from the original platform locale. Warning: No display specified. You will not be able to display graphics on the screen. Registering imageDump.mgz to hippocampal mask from ASEG This file does not contain MRI parameters $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $ --mov: Using imageDump.mgz as movable/source volume. --dst: Using /home/gustav/Desktop/preprocessing_h70/bert/tmp/hippoSF_T1_v10_left//hippoAmygBinaryMask_autoCropped.mgz as target volume. --lta: Output transform as trash.lta . --mapmovhdr: Will save header adjusted movable as imageDump_coregistered.mgz ! --sat: Using saturation 50 in M-estimator! reading source 'imageDump.mgz'... reading target '/home/gustav/Desktop/preprocessing_h70/bert/tmp/hippoSF_T1_v10_left//hippoAmygBinaryMask_autoCropped.mgz'... Registration::setSourceAndTarget(MRI s, MRI t, keeptype = TRUE ) Type Source : 0 Type Target : 3 ensure both FLOAT (3) Reordering axes in mov to better fit dst... ( -1 3 -2 ) MRIreorder() ----------- xdim=-1 ydim=3 zdim=-2 src 131 241 99, 0.250000 0.250000 0.250000 dst 131 99 241, 0.250000 0.250000 0.250000 Determinant after swap : 0.015625 Mov: (0.25, 0.25, 0.25)mm and dim (131, 99, 241) Dst: (1, 1, 1)mm and dim (37, 41, 62) Asserting both images: 1mm isotropic - reslicing Mov ... -- changing data type from 0 to 3 (noscale = 0)... -- Original : (0.25, 0.25, 0.25)mm and (131, 99, 241) voxels. -- Resampled: (1, 1, 1)mm and (37, 41, 62) voxels. -- Reslicing using cubic bspline MRItoBSpline degree 3 - no Dst reslice necessary Registration::computeMultiresRegistration - computing centroids - computing initial transform -- using translation info - Get Gaussian Pyramid Limits ( min size: 16 max size: -1 ) - Build Gaussian Pyramid ( Limits min steps: 0 max steps: 1 ) - Build Gaussian Pyramid ( Limits min steps: 0 max steps: 1 ) - initial transform: Ti = [ ... 1.0000000000000 0 0 -0.0853686737771 0 1.0000000000000 0 1.2016313189860 0 0 1.0000000000000 -2.2243292488997 0 0 0 1.0000000000000 ] - initial iscale: Ii =1 Resolution: 1 S( 18 20 31 ) T( 18 20 31 ) Iteration(f): 1 -- diff. to prev. transform: 7.21662 Iteration(f): 2 -- diff. to prev. transform: 6.15354 Iteration(f): 3 -- diff. to prev. transform: 6.97149 Iteration(f): 4 -- diff. to prev. transform: 6.86256 Iteration(f): 5 -- diff. to prev. transform: 0.967403 max it: 5 reached! Resolution: 0 S( 37 41 62 ) T( 37 41 62 ) Iteration(f): 1 -- diff. to prev. transform: 7.54107 Iteration(f): 2 -- diff. to prev. transform: 0.698758 Iteration(f): 3 -- diff. to prev. transform: 0.15189 Iteration(f): 4 -- diff. to prev. transform: 0.0672978 Iteration(f): 5 -- diff. to prev. transform: 0.0237103 max it: 5 reached! - final transform: Tf = [ ... 0.9912993300427 -0.0532644120549 -0.1203683540856 5.7888075502475 0.0958887336641 0.9186890163055 0.3831655543964 -13.1833775895448 0.0901719968346 -0.3913737264151 0.9158032634026 7.5440107659603 0 0 0 1.0000000000000 ] - final iscale: If = 1 ********************************************************** * * WARNING: Registration did not converge in 5 steps! * Problem might be ill posed. * Please inspect output manually! * ********************************************************** Final Transform: Adjusting final transform due to initial resampling (voxel or size changes) ... M = [ ... -0.2478248325107 -0.0300920885214 0.0133161030137 38.2694730998602 -0.0239721834160 0.0957913885991 -0.2296722540764 20.4442688306371 -0.0225429992086 0.2289508158506 0.0978434316038 -1.3010238124590 0 0 0 1.0000000000000 ] Determinant : -0.015625 writing output transformation to trash.lta ... converting VOX to RAS and saving RAS2RAS... mapmovhdr: Changing vox2ras MOV header (to map to DST) ... To check aligned result, run: freeview -v /home/gustav/Desktop/preprocessing_h70/bert/tmp/hippoSF_T1_v10_left//hippoAmygBinaryMask_autoCropped.mgz imageDump_coregistered.mgz Registration took 0 minutes and 1 seconds. Thank you for using RobustRegister! If you find it useful and use it for a publication, please cite: Highly Accurate Inverse Consistent Registration: A Robust Approach M. Reuter, H.D. Rosas, B. Fischl. NeuroImage 53(4):1181-1196, 2010. http://dx.doi.org/10.1016/j.neuroimage.2010.07.020 http://reuter.mit.edu/papers/reuter-robreg10.pdf $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $ --mov: Using imageDump.mgz as movable/source volume. --dst: Using /home/gustav/Desktop/preprocessing_h70/bert/tmp/hippoSF_T1_v10_left//hippoAmygBinaryMask_autoCropped.mgz as target volume. --lta: Output transform as trash.lta . --mapmovhdr: Will save header adjusted movable as imageDump_coregistered.mgz ! --affine: Enableing affine transform! --sat: Using saturation 50 in M-estimator! reading source 'imageDump.mgz'... reading target '/home/gustav/Desktop/preprocessing_h70/bert/tmp/hippoSF_T1_v10_left//hippoAmygBinaryMask_autoCropped.mgz'... Registration::setSourceAndTarget(MRI s, MRI t, keeptype = TRUE ) Type Source : 0 Type Target : 3 ensure both FLOAT (3) Reordering axes in mov to better fit dst... ( -1 3 -2 ) MRIreorder() ----------- xdim=-1 ydim=3 zdim=-2 src 131 241 99, 0.250000 0.250000 0.250000 dst 131 99 241, 0.250000 0.250000 0.250000 Determinant after swap : 0.015625 Mov: (0.25, 0.25, 0.25)mm and dim (131, 99, 241) Dst: (1, 1, 1)mm and dim (37, 41, 62) Asserting both images: 1mm isotropic - reslicing Mov ... -- changing data type from 0 to 3 (noscale = 0)... -- Original : (0.25, 0.25, 0.25)mm and (131, 99, 241) voxels. -- Resampled: (1, 1, 1)mm and (37, 41, 62) voxels. -- Reslicing using cubic bspline MRItoBSpline degree 3 - no Dst reslice necessary Registration::computeMultiresRegistration - computing centroids - computing initial transform -- using translation info - Get Gaussian Pyramid Limits ( min size: 16 max size: -1 ) - Build Gaussian Pyramid ( Limits min steps: 0 max steps: 1 ) - Build Gaussian Pyramid ( Limits min steps: 0 max steps: 1 ) - initial transform: Ti = [ ... 1.0000000000000 0 0 -0.0853669414629 0 1.0000000000000 0 1.2016287568146 0 0 1.0000000000000 -2.2243259196614 0 0 0 1.0000000000000 ] - initial iscale: Ii =1 Resolution: 1 S( 18 20 31 ) T( 18 20 31 ) Iteration(f): 1 -- diff. to prev. transform: 8.25838 Iteration(f): 2 -- diff. to prev. transform: 6.3407 Iteration(f): 3 -- diff. to prev. transform: 10.1974 Iteration(f): 4 -- diff. to prev. transform: 10.5702 Iteration(f): 5 -- diff. to prev. transform: 6.29701 max it: 5 reached! Resolution: 0 S( 37 41 62 ) T( 37 41 62 ) Iteration(f): 1 -- diff. to prev. transform: 12.4573 Iteration(f): 2 -- diff. to prev. transform: 3.91282 Iteration(f): 3 -- diff. to prev. transform: 1.1287 Iteration(f): 4 -- diff. to prev. transform: 0.420723 Iteration(f): 5 -- diff. to prev. transform: 0.12129 max it: 5 reached! - final transform: Tf = [ ... 1.1997305425680 0.2476866612058 -0.0087258072584 -8.7603983546600 0.1246448475655 1.0570167247274 0.4686359776947 -20.2473903568993 0.2104822605740 -0.5989846009967 0.9677558562115 7.0428865280422 0 0 0 1.0000000000000 ] - final iscale: If = 1 ********************************************************** * * WARNING: Registration did not converge in 5 steps! * Problem might be ill posed. * Please inspect output manually! * ********************************************************** Final Transform: Adjusting final transform due to initial resampling (voxel or size changes) ... M = [ ... -0.2999325650227 -0.0021814453690 -0.0619216651714 40.8534148553142 -0.0311612101455 0.1171589824737 -0.2642541881651 18.9636700857019 -0.0526205539716 0.2419388978366 0.1497461358285 -4.3642495627071 0 0 0 1.0000000000000 ] Determinant : -0.0243932 Decompose into Rot * Shear * Scale : Rot = [ ... -0.9894315134929 -0.1086204570019 -0.0960566313576 0.0327399918878 0.4779943885528 -0.8777525035243 -0.1412564088396 0.8716208813657 0.4693864784258 ] Shear = [ ... 1.0000000000000 -0.1055013918101 0.1020906433582 -0.0929535682214 1.0000000000000 0.0354843472090 0.1037780594497 0.0409400669231 1.0000000000000 ] Scale = diag([ 0.3031755044740 0.2671172811529 0.3081865731475 ]) writing output transformation to trash.lta ... converting VOX to RAS and saving RAS2RAS... mapmovhdr: Changing vox2ras MOV header (to map to DST) ... To check aligned result, run: freeview -v /home/gustav/Desktop/preprocessing_h70/bert/tmp/hippoSF_T1_v10_left//hippoAmygBinaryMask_autoCropped.mgz imageDump_coregistered.mgz Registration took 0 minutes and 1 seconds. Thank you for using RobustRegister! If you find it useful and use it for a publication, please cite: Highly Accurate Inverse Consistent Registration: A Robust Approach M. Reuter, H.D. Rosas, B. Fischl. NeuroImage 53(4):1181-1196, 2010. http://dx.doi.org/10.1016/j.neuroimage.2010.07.020 http://reuter.mit.edu/papers/reuter-robreg10.pdf Reading contexts of file /usr/local/freesurfer-6.0.0/average/HippoSF/atlas/compressionLookupTable.txt Constructing image-to-world transform from header information (asegMod.mgz) Returning the following transform: AffineTransform (0x7fd30a34c5b0) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 420 Debug: Off Object Name: Observers: none Matrix: -1 0 0 0 0 1 0 -1 0 Offset: [133.4, -110, 128] Center: [0, 0, 0] Translation: [133.4, -110, 128] Inverse: -1 0 0 0 0 -1 0 1 0 Singular: 0 Constructing image-to-world transform from header information (/home/gustav/Desktop/preprocessing_h70/bert/tmp/hippoSF_T1_v10_left/imageDump.mgz) Returning the following transform: AffineTransform (0x7fd30a34c5b0) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 577 Debug: Off Object Name: Observers: none Matrix: 0.299933 0.00218145 0.0619217 -0.0526206 0.241939 0.149746 0.0311612 -0.117159 0.264254 Offset: [-39.4537, -31.3643, -8.96367] Center: [0, 0, 0] Translation: [-39.4537, -31.3643, -8.96367] Inverse: 3.34017 -0.321038 -0.600766 0.761339 3.1701 -1.97482 -0.0563329 1.44335 2.97953 Singular: 0 Transform before cropping: AffineTransform (0x7fd30a34c5b0) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 579 Debug: Off Object Name: Observers: none Matrix: -0.299933 -0.00218145 -0.0619217 -0.0311612 0.117159 -0.264254 -0.0526206 0.241939 0.149746 Offset: [172.853, 136.964, 78.6357] Center: [0, 0, 0] Translation: [172.853, 136.964, 78.6357] Inverse: -3.34017 0.600766 -0.321038 -0.761339 1.97482 3.1701 0.0563329 -2.97953 1.44335 Singular: 0 WorldToImageTransform before cropping: AffineTransform (0x7fd30a32bbb0) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 581 Debug: Off Object Name: Observers: none Matrix: -1 0 0 0 0 -1 0 1 0 Offset: [133.4, 128, 110] Center: [0, 0, 0] Translation: [133.4, 128, 110] Inverse: -1 0 0 0 0 1 0 -1 0 Singular: 0 m_BoundingBoxSize: [131, 241,99] minimalMappedCoordinate: [127.27, 107.016,71.7951] maximalMappedCoordinate: [172.853, 165.082,151.376] Cropping with min [123 102 63] and max [177 171 160] m_OriginalImageRegion before checking margins: ImageRegion (0x7fd30a441eb8) Dimension: 3 Index: [123, 102, 63] Size: [55, 70, 98] m_CroppedImageRegion before checking margins: ImageRegion (0x7fd30a441e80) Dimension: 3 Index: [0, 0, 0] Size: [55, 70, 98] m_OriginalImageRegion after checking margins: ImageRegion (0x7fd30a441eb8) Dimension: 3 Index: [123, 102, 63] Size: [55, 70, 98] m_CroppedImageRegion after checking margins: ImageRegion (0x7fd30a441e80) Dimension: 3 Index: [0, 0, 0] Size: [55, 70, 98] Transform after cropping: AffineTransform (0x7fd30a34c5b0) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 738 Debug: Off Object Name: Observers: none Matrix: -0.299933 -0.00218145 -0.0619217 -0.0311612 0.117159 -0.264254 -0.0526206 0.241939 0.149746 Offset: [49.8534, 34.9637, 15.6357] Center: [0, 0, 0] Translation: [49.8534, 34.9637, 15.6357] Inverse: -3.34017 0.600766 -0.321038 -0.761339 1.97482 3.1701 0.0563329 -2.97953 1.44335 Singular: 0 WorldToImageTransform after cropping: AffineTransform (0x7fd30a32bbb0) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 739 Debug: Off Object Name: Observers: none Matrix: -1 0 0 0 0 -1 0 1 0 Offset: [10.3997, 26, 47] Center: [0, 0, 0] Translation: [10.3997, 26, 47] Inverse: -1 0 0 0 0 1 0 -1 0 Singular: 0 Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Careful here: the applied transformation will turn positive tetrahedra into negative ones. -0.299933 -0.00218145 -0.0619217 -0.0311612 0.117159 -0.264254 -0.0526206 0.241939 0.149746 determinant: -0.0243932 Starting to swap the point assignments of each tetrahedron... Warning: This concatenation operation includes an empty array with an incorrect number of rows. Concatenation including empty arrays will require all arrays to have the same number of rows in a future release. [> In segmentSubjectT1_autoEstimateAlveusML at 325] Reading contexts of file /usr/local/freesurfer-6.0.0/average/HippoSF/atlas/compressionLookupTable.txt -------------- Making Left-Amygdala map to reduced label 1 -------------- Making alveus map to reduced label 2 Making subiculum map to reduced label 2 Making Hippocampal_tail map to reduced label 2 Making molecular_layer_HP map to reduced label 2 Making GC-ML-DG map to reduced label 2 Making CA4 map to reduced label 2 Making CA1 map to reduced label 2 Making CA3 map to reduced label 2 Making HATA map to reduced label 2 Making fimbria map to reduced label 2 Making presubiculum map to reduced label 2 Making parasubiculum map to reduced label 2 Making hippocampal-fissure map to reduced label 2 -------------- Making Left-Cerebral-Cortex map to reduced label 3 -------------- Making Left-Cerebral-White-Matter map to reduced label 4 -------------- Making Left-Lateral-Ventricle map to reduced label 5 -------------- Making Left-choroid-plexus map to reduced label 6 -------------- Making Unknown map to reduced label 7 -------------- Making Left-VentralDC map to reduced label 8 -------------- Making Left-Putamen map to reduced label 9 -------------- Making Left-Pallidum map to reduced label 10 -------------- Making Left-Thalamus-Proper map to reduced label 11 -------------- Making Left-Accumbens-area map to reduced label 12 -------------- Making Left-Caudate map to reduced label 13 numberOfLabels: 13 Rasterizing mesh...here: 13 here2: 13 done Smoothing mesh collection with kernel size 3.000000 ...Smoothing class: 0 Smoothing class: 1 Smoothing class: 2 Smoothing class: 3 Smoothing class: 4 Smoothing class: 5 Smoothing class: 6 Smoothing class: 7 Smoothing class: 8 Smoothing class: 9 Smoothing class: 10 Smoothing class: 11 Smoothing class: 12 done numberOfImages = 1 Image: 4 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 100.000000 precisions[0][0][1] = 100.000000 precisions[0][0][2] = 100.000000 precisions[0][0][3] = 100.000000 precisions[0][0][4] = 100.000000 precisions[0][0][5] = 100.000000 precisions[0][0][6] = 100.000000 precisions[0][0][7] = 100.000000 precisions[0][0][8] = 100.000000 precisions[0][0][9] = 100.000000 precisions[0][0][10] = 100.000000 precisions[0][0][11] = 100.000000 precisions[0][0][12] = 100.000000 means[0][0] = 18.000000 means[0][1] = 17.000000 means[0][2] = 3.000000 means[0][3] = 2.000000 means[0][4] = 4.000000 means[0][5] = 31.000000 means[0][6] = 1.000000 means[0][7] = 28.000000 means[0][8] = 12.000000 means[0][9] = 13.000000 means[0][10] = 10.000000 means[0][11] = 26.000000 means[0][12] = 11.000000 Resolution 1, iteration 1 Did one deformation step of max. 0.25 voxels in 3.0996 seconds minLogLikelihoodTimesPrior = -2.9641e+04 Resolution 1, iteration 2 Did one deformation step of max. 0.58095 voxels in 1.0312 seconds minLogLikelihoodTimesPrior = -2.9844e+04 Resolution 1, iteration 3 Did one deformation step of max. 0.34693 voxels in 1.8872 seconds minLogLikelihoodTimesPrior = -3.0016e+04 Resolution 1, iteration 4 Did one deformation step of max. 0.23344 voxels in 1.2641 seconds minLogLikelihoodTimesPrior = -3.0167e+04 Resolution 1, iteration 5 Did one deformation step of max. 0.10367 voxels in 2.0122 seconds minLogLikelihoodTimesPrior = -3.0234e+04 Resolution 1, iteration 6 Did one deformation step of max. 0.28456 voxels in 1.0154 seconds minLogLikelihoodTimesPrior = -3.0239e+04 Resolution 1, iteration 7 Did one deformation step of max. 0.013904 voxels in 1.0073 seconds minLogLikelihoodTimesPrior = -3.0249e+04 Resolution 1, iteration 8 Did one deformation step of max. 0.10241 voxels in 1.0136 seconds minLogLikelihoodTimesPrior = -3.0269e+04 Resolution 1, iteration 9 Did one deformation step of max. 0.088687 voxels in 1.0333 seconds minLogLikelihoodTimesPrior = -3.0305e+04 Resolution 1, iteration 10 Did one deformation step of max. 0.093621 voxels in 1.0148 seconds minLogLikelihoodTimesPrior = -3.0376e+04 Resolution 1, iteration 11 Did one deformation step of max. 0.17982 voxels in 0.98949 seconds minLogLikelihoodTimesPrior = -3.0508e+04 Resolution 1, iteration 12 Did one deformation step of max. 0.16403 voxels in 1.4337 seconds minLogLikelihoodTimesPrior = -3.0630e+04 Resolution 1, iteration 13 Did one deformation step of max. 0.17001 voxels in 1.5036 seconds minLogLikelihoodTimesPrior = -3.0743e+04 Resolution 1, iteration 14 Did one deformation step of max. 0.39024 voxels in 0.97585 seconds minLogLikelihoodTimesPrior = -3.0946e+04 Resolution 1, iteration 15 Did one deformation step of max. 0.29889 voxels in 1.2574 seconds minLogLikelihoodTimesPrior = -3.1127e+04 Resolution 1, iteration 16 Did one deformation step of max. 0.19658 voxels in 1.4273 seconds minLogLikelihoodTimesPrior = -3.1208e+04 Resolution 1, iteration 17 Did one deformation step of max. 0.21287 voxels in 1.7141 seconds minLogLikelihoodTimesPrior = -3.1284e+04 Resolution 1, iteration 18 Did one deformation step of max. 0.12459 voxels in 1.9316 seconds minLogLikelihoodTimesPrior = -3.1353e+04 Resolution 1, iteration 19 Did one deformation step of max. 0.18435 voxels in 1.0194 seconds minLogLikelihoodTimesPrior = -3.1480e+04 Resolution 1, iteration 20 Did one deformation step of max. 0.070699 voxels in 2.2155 seconds minLogLikelihoodTimesPrior = -3.1510e+04 Resolution 1, iteration 21 Did one deformation step of max. 0.1532 voxels in 0.99922 seconds minLogLikelihoodTimesPrior = -3.1562e+04 Resolution 1, iteration 22 Did one deformation step of max. 0.193 voxels in 0.96136 seconds minLogLikelihoodTimesPrior = -3.1656e+04 Resolution 1, iteration 23 Did one deformation step of max. 0.19917 voxels in 1.1794 seconds minLogLikelihoodTimesPrior = -3.1734e+04 Resolution 1, iteration 24 Did one deformation step of max. 0.076892 voxels in 1.2563 seconds minLogLikelihoodTimesPrior = -3.1762e+04 Resolution 1, iteration 25 Did one deformation step of max. 0.026733 voxels in 1.2719 seconds minLogLikelihoodTimesPrior = -3.1772e+04 Resolution 1, iteration 26 Did one deformation step of max. 0.039703 voxels in 0.94932 seconds minLogLikelihoodTimesPrior = -3.1785e+04 Resolution 1, iteration 27 Did one deformation step of max. 0.21164 voxels in 0.98419 seconds minLogLikelihoodTimesPrior = -3.1800e+04 Resolution 1, iteration 28 Did one deformation step of max. 0.057589 voxels in 2.0829 seconds minLogLikelihoodTimesPrior = -3.1804e+04 Resolution 1, iteration 29 Did one deformation step of max. 0.076674 voxels in 0.96299 seconds minLogLikelihoodTimesPrior = -3.1810e+04 Resolution 1, iteration 30 Did one deformation step of max. 0.050316 voxels in 0.9119 seconds minLogLikelihoodTimesPrior = -3.1822e+04 Resolution 1, iteration 31 Did one deformation step of max. 0.064905 voxels in 0.97934 seconds minLogLikelihoodTimesPrior = -3.1844e+04 Resolution 1, iteration 32 Did one deformation step of max. 0.10339 voxels in 0.95655 seconds minLogLikelihoodTimesPrior = -3.1884e+04 Resolution 1, iteration 33 Did one deformation step of max. 0.082835 voxels in 1.8489 seconds minLogLikelihoodTimesPrior = -3.1921e+04 Resolution 1, iteration 34 Did one deformation step of max. 0.030236 voxels in 2.5195 seconds minLogLikelihoodTimesPrior = -3.1939e+04 Resolution 1, iteration 35 Did one deformation step of max. 0.078671 voxels in 1.0107 seconds minLogLikelihoodTimesPrior = -3.1971e+04 Resolution 1, iteration 36 Did one deformation step of max. 0.13964 voxels in 0.99704 seconds minLogLikelihoodTimesPrior = -3.2029e+04 Resolution 1, iteration 37 Did one deformation step of max. 0.068352 voxels in 2.8608 seconds minLogLikelihoodTimesPrior = -3.2056e+04 Resolution 1, iteration 38 Did one deformation step of max. 0.10367 voxels in 1.0008 seconds minLogLikelihoodTimesPrior = -3.2104e+04 Resolution 1, iteration 39 Did one deformation step of max. 0.13617 voxels in 1.6851 seconds minLogLikelihoodTimesPrior = -3.2145e+04 Resolution 1, iteration 40 Did one deformation step of max. 0.067519 voxels in 1.1165 seconds minLogLikelihoodTimesPrior = -3.2183e+04 Resolution 1, iteration 41 Did one deformation step of max. 0.12799 voxels in 1.7687 seconds minLogLikelihoodTimesPrior = -3.2216e+04 Resolution 1, iteration 42 Did one deformation step of max. 0.061545 voxels in 1.027 seconds minLogLikelihoodTimesPrior = -3.2230e+04 Resolution 1, iteration 43 Did one deformation step of max. 0.10218 voxels in 1.0235 seconds minLogLikelihoodTimesPrior = -3.2255e+04 Resolution 1, iteration 44 Did one deformation step of max. 0.15137 voxels in 1.0023 seconds minLogLikelihoodTimesPrior = -3.2294e+04 Resolution 1, iteration 45 Did one deformation step of max. 0.014886 voxels in 3.2443 seconds minLogLikelihoodTimesPrior = -3.2297e+04 Resolution 1, iteration 46 Did one deformation step of max. 0.016878 voxels in 0.99696 seconds minLogLikelihoodTimesPrior = -3.2302e+04 Resolution 1, iteration 47 Did one deformation step of max. 0.0013618 voxels in 8.9449 seconds minLogLikelihoodTimesPrior = -3.2302e+04 Resolution 1, iteration 48 Did one deformation step of max. 5.6346e-05 voxels in 1.0219 seconds minLogLikelihoodTimesPrior = -3.2302e+04 Resolution 1, iteration 49 Did one deformation step of max. 0.0002263 voxels in 7.4241 seconds minLogLikelihoodTimesPrior = -3.2302e+04 Resolution 1, iteration 50 Did one deformation step of max. 9.6257e-07 voxels in 1.0191 seconds minLogLikelihoodTimesPrior = -3.2302e+04 Resolution 1, iteration 51 Did one deformation step of max. 4.9635e-06 voxels in 1.013 seconds minLogLikelihoodTimesPrior = -3.2302e+04 Resolution 1, iteration 52 Did one deformation step of max. 7.5836e-06 voxels in 0.99525 seconds minLogLikelihoodTimesPrior = -3.2302e+04 Resolution 1, iteration 53 Did one deformation step of max. 1.8508e-05 voxels in 1.0512 seconds minLogLikelihoodTimesPrior = -3.2302e+04 Resolution 1, iteration 54 Did one deformation step of max. 3.7639e-05 voxels in 1.0056 seconds minLogLikelihoodTimesPrior = -3.2302e+04 Resolution 1, iteration 55 Did one deformation step of max. 6.2415e-05 voxels in 1.0262 seconds minLogLikelihoodTimesPrior = -3.2302e+04 Resolution 1, iteration 56 Did one deformation step of max. 0.00015171 voxels in 0.95488 seconds minLogLikelihoodTimesPrior = -3.2302e+04 Resolution 1, iteration 57 Did one deformation step of max. 0.00025451 voxels in 1.018 seconds minLogLikelihoodTimesPrior = -3.2302e+04 Resolution 1, iteration 58 Did one deformation step of max. 0.00059983 voxels in 0.97826 seconds minLogLikelihoodTimesPrior = -3.2302e+04 Resolution 1, iteration 59 Did one deformation step of max. 0.0010715 voxels in 0.96698 seconds minLogLikelihoodTimesPrior = -3.2302e+04 Resolution 1, iteration 60 Did one deformation step of max. 0.0024004 voxels in 0.98156 seconds minLogLikelihoodTimesPrior = -3.2303e+04 Resolution 1, iteration 61 Did one deformation step of max. 0.003782 voxels in 0.98857 seconds minLogLikelihoodTimesPrior = -3.2303e+04 Resolution 1, iteration 62 Did one deformation step of max. 0.0082048 voxels in 0.9872 seconds minLogLikelihoodTimesPrior = -3.2304e+04 Resolution 1, iteration 63 Did one deformation step of max. 0.02648 voxels in 1.0343 seconds minLogLikelihoodTimesPrior = -3.2305e+04 Resolution 1, iteration 64 Did one deformation step of max. 0.014926 voxels in 0.99065 seconds minLogLikelihoodTimesPrior = -3.2307e+04 Resolution 1, iteration 65 Did one deformation step of max. 0.076364 voxels in 1.0153 seconds minLogLikelihoodTimesPrior = -3.2310e+04 Resolution 1, iteration 66 Did one deformation step of max. 0.023553 voxels in 1.0003 seconds minLogLikelihoodTimesPrior = -3.2316e+04 Resolution 1, iteration 67 Did one deformation step of max. 0.052134 voxels in 0.98342 seconds minLogLikelihoodTimesPrior = -3.2325e+04 Resolution 1, iteration 68 Did one deformation step of max. 0.091702 voxels in 1.024 seconds minLogLikelihoodTimesPrior = -3.2343e+04 Resolution 1, iteration 69 Did one deformation step of max. 0.21625 voxels in 0.97589 seconds minLogLikelihoodTimesPrior = -3.2371e+04 Resolution 1, iteration 70 Did one deformation step of max. 0.25902 voxels in 0.98223 seconds minLogLikelihoodTimesPrior = -3.2418e+04 Resolution 1, iteration 71 Did one deformation step of max. 0.24838 voxels in 1.6174 seconds minLogLikelihoodTimesPrior = -3.2457e+04 Resolution 1, iteration 72 Did one deformation step of max. 0.076479 voxels in 2.249 seconds minLogLikelihoodTimesPrior = -3.2473e+04 Resolution 1, iteration 73 Did one deformation step of max. 0.12075 voxels in 0.95849 seconds minLogLikelihoodTimesPrior = -3.2499e+04 Resolution 1, iteration 74 Did one deformation step of max. 0.10244 voxels in 1.0263 seconds minLogLikelihoodTimesPrior = -3.2520e+04 Resolution 1, iteration 75 Did one deformation step of max. 0.10212 voxels in 1.3282 seconds minLogLikelihoodTimesPrior = -3.2537e+04 Resolution 1, iteration 76 Did one deformation step of max. 0.034149 voxels in 2.5068 seconds minLogLikelihoodTimesPrior = -3.2545e+04 Resolution 1, iteration 77 Did one deformation step of max. 0.073554 voxels in 0.93285 seconds minLogLikelihoodTimesPrior = -3.2557e+04 Resolution 1, iteration 78 Did one deformation step of max. 0.0728 voxels in 1.8301 seconds minLogLikelihoodTimesPrior = -3.2568e+04 Resolution 1, iteration 79 Did one deformation step of max. 0.13679 voxels in 0.92693 seconds minLogLikelihoodTimesPrior = -3.2587e+04 Resolution 1, iteration 80 Did one deformation step of max. 0.24246 voxels in 0.96746 seconds minLogLikelihoodTimesPrior = -3.2615e+04 Resolution 1, iteration 81 Did one deformation step of max. 0.087379 voxels in 1.3926 seconds minLogLikelihoodTimesPrior = -3.2626e+04 Resolution 1, iteration 82 Did one deformation step of max. 0.0080661 voxels in 4.0456 seconds minLogLikelihoodTimesPrior = -3.2627e+04 Resolution 1, iteration 83 Did one deformation step of max. 0.0042375 voxels in 0.89505 seconds minLogLikelihoodTimesPrior = -3.2628e+04 Resolution 1, iteration 84 Did one deformation step of max. 0.0065086 voxels in 0.92071 seconds minLogLikelihoodTimesPrior = -3.2628e+04 Resolution 1, iteration 85 Did one deformation step of max. 0.008583 voxels in 0.92658 seconds minLogLikelihoodTimesPrior = -3.2629e+04 Resolution 1, iteration 86 Did one deformation step of max. 0.022251 voxels in 0.98168 seconds minLogLikelihoodTimesPrior = -3.2630e+04 Resolution 1, iteration 87 Did one deformation step of max. 0.016855 voxels in 0.90615 seconds minLogLikelihoodTimesPrior = -3.2632e+04 Resolution 1, iteration 88 Did one deformation step of max. 0.027093 voxels in 0.9004 seconds minLogLikelihoodTimesPrior = -3.2636e+04 Resolution 1, iteration 89 Did one deformation step of max. 0.03878 voxels in 0.88881 seconds minLogLikelihoodTimesPrior = -3.2641e+04 Resolution 1, iteration 90 Did one deformation step of max. 0.030709 voxels in 1.828 seconds minLogLikelihoodTimesPrior = -3.2646e+04 Resolution 1, iteration 91 Did one deformation step of max. 0.050105 voxels in 0.87916 seconds minLogLikelihoodTimesPrior = -3.2653e+04 Resolution 1, iteration 92 Did one deformation step of max. 0.085943 voxels in 0.91233 seconds minLogLikelihoodTimesPrior = -3.2665e+04 Resolution 1, iteration 93 Did one deformation step of max. 0.13125 voxels in 0.91838 seconds minLogLikelihoodTimesPrior = -3.2685e+04 Resolution 1, iteration 94 Did one deformation step of max. 0.089757 voxels in 1.7478 seconds minLogLikelihoodTimesPrior = -3.2703e+04 Resolution 1, iteration 95 Did one deformation step of max. 0.066272 voxels in 1.6619 seconds minLogLikelihoodTimesPrior = -3.2718e+04 Resolution 1, iteration 96 Did one deformation step of max. 0.11089 voxels in 0.95739 seconds minLogLikelihoodTimesPrior = -3.2740e+04 Resolution 1, iteration 97 Did one deformation step of max. 0.069743 voxels in 1.0071 seconds minLogLikelihoodTimesPrior = -3.2755e+04 Resolution 1, iteration 98 Did one deformation step of max. 0.068608 voxels in 1.6998 seconds minLogLikelihoodTimesPrior = -3.2768e+04 Resolution 1, iteration 99 Did one deformation step of max. 0.054516 voxels in 1.1133 seconds minLogLikelihoodTimesPrior = -3.2778e+04 Resolution 1, iteration 100 Did one deformation step of max. 0.1118 voxels in 0.90481 seconds minLogLikelihoodTimesPrior = -3.2786e+04 Resolution 1, iteration 101 Did one deformation step of max. 0.011653 voxels in 2.2017 seconds minLogLikelihoodTimesPrior = -3.2787e+04 Resolution 1, iteration 102 Did one deformation step of max. 0.0047722 voxels in 0.91825 seconds minLogLikelihoodTimesPrior = -3.2789e+04 Resolution 1, iteration 103 Did one deformation step of max. 0.0044099 voxels in 2.3907 seconds minLogLikelihoodTimesPrior = -3.2789e+04 Resolution 1, iteration 104 Did one deformation step of max. 0.001779 voxels in 0.87128 seconds minLogLikelihoodTimesPrior = -3.2789e+04 Resolution 1, iteration 105 Did one deformation step of max. 0.0021934 voxels in 2.8035 seconds minLogLikelihoodTimesPrior = -3.2790e+04 Resolution 1, iteration 106 Did one deformation step of max. 0.00045143 voxels in 0.91715 seconds minLogLikelihoodTimesPrior = -3.2790e+04 Resolution 1, iteration 107 Did one deformation step of max. 0.0012704 voxels in 2.7874 seconds minLogLikelihoodTimesPrior = -3.2790e+04 Resolution 1, iteration 108 Did one deformation step of max. 0.00017385 voxels in 0.92253 seconds minLogLikelihoodTimesPrior = -3.2790e+04 Resolution 1, iteration 109 Did one deformation step of max. 0.00035583 voxels in 0.97651 seconds minLogLikelihoodTimesPrior = -3.2790e+04 Resolution 1, iteration 110 Did one deformation step of max. 0.0019449 voxels in 0.92806 seconds minLogLikelihoodTimesPrior = -3.2790e+04 Resolution 1, iteration 111 Did one deformation step of max. 0.00033896 voxels in 0.95517 seconds minLogLikelihoodTimesPrior = -3.2790e+04 Resolution 1, iteration 112 Did one deformation step of max. 0.00078331 voxels in 0.9556 seconds minLogLikelihoodTimesPrior = -3.2791e+04 Resolution 1, iteration 113 Did one deformation step of max. 0.0041705 voxels in 0.93537 seconds minLogLikelihoodTimesPrior = -3.2791e+04 Resolution 1, iteration 114 Did one deformation step of max. 0.0024378 voxels in 0.96221 seconds minLogLikelihoodTimesPrior = -3.2791e+04 Resolution 1, iteration 115 Did one deformation step of max. 0.0058561 voxels in 2.5987 seconds minLogLikelihoodTimesPrior = -3.2792e+04 Resolution 1, iteration 116 Did one deformation step of max. 0.0018732 voxels in 0.95239 seconds minLogLikelihoodTimesPrior = -3.2792e+04 Resolution 1, iteration 117 Did one deformation step of max. 0.0041729 voxels in 2.8834 seconds minLogLikelihoodTimesPrior = -3.2792e+04 Resolution 1, iteration 118 Did one deformation step of max. 2.7405e-05 voxels in 0.93081 seconds minLogLikelihoodTimesPrior = -3.2792e+04 Resolution 1, iteration 119 Did one deformation step of max. 5.3921e-05 voxels in 0.96219 seconds minLogLikelihoodTimesPrior = -3.2792e+04 Resolution 1, iteration 120 Did one deformation step of max. 0.00011556 voxels in 0.93199 seconds minLogLikelihoodTimesPrior = -3.2792e+04 Resolution 1, iteration 121 Did one deformation step of max. 0.00021353 voxels in 0.98026 seconds minLogLikelihoodTimesPrior = -3.2792e+04 Resolution 1, iteration 122 Did one deformation step of max. 0.00045752 voxels in 0.92764 seconds minLogLikelihoodTimesPrior = -3.2792e+04 Resolution 1, iteration 123 Did one deformation step of max. 0.00086322 voxels in 0.95259 seconds minLogLikelihoodTimesPrior = -3.2792e+04 Resolution 1, iteration 124 Did one deformation step of max. 0.0017326 voxels in 0.94952 seconds minLogLikelihoodTimesPrior = -3.2792e+04 Resolution 1, iteration 125 Did one deformation step of max. 0.0034601 voxels in 0.96288 seconds minLogLikelihoodTimesPrior = -3.2792e+04 Resolution 1, iteration 126 Did one deformation step of max. 0.0056667 voxels in 0.97166 seconds minLogLikelihoodTimesPrior = -3.2793e+04 Resolution 1, iteration 127 Did one deformation step of max. 0.015163 voxels in 0.92799 seconds minLogLikelihoodTimesPrior = -3.2793e+04 Resolution 1, iteration 128 Did one deformation step of max. 0.014643 voxels in 0.95468 seconds minLogLikelihoodTimesPrior = -3.2795e+04 Resolution 1, iteration 129 Did one deformation step of max. 0.026073 voxels in 0.96746 seconds minLogLikelihoodTimesPrior = -3.2797e+04 Resolution 1, iteration 130 Did one deformation step of max. 0.049029 voxels in 0.97032 seconds minLogLikelihoodTimesPrior = -3.2799e+04 Resolution 1, iteration 131 Did one deformation step of max. 0.046548 voxels in 0.93812 seconds minLogLikelihoodTimesPrior = -3.2804e+04 Resolution 1, iteration 132 Did one deformation step of max. 0.065588 voxels in 0.90005 seconds minLogLikelihoodTimesPrior = -3.2811e+04 Resolution 1, iteration 133 Did one deformation step of max. 0.084968 voxels in 0.90359 seconds minLogLikelihoodTimesPrior = -3.2822e+04 Resolution 1, iteration 134 Did one deformation step of max. 0.12589 voxels in 0.91654 seconds minLogLikelihoodTimesPrior = -3.2840e+04 Resolution 1, iteration 135 Did one deformation step of max. 0.080195 voxels in 1.6969 seconds minLogLikelihoodTimesPrior = -3.2854e+04 Resolution 1, iteration 136 Did one deformation step of max. 0.12799 voxels in 0.94035 seconds minLogLikelihoodTimesPrior = -3.2871e+04 Resolution 1, iteration 137 Did one deformation step of max. 0.044021 voxels in 1.9001 seconds minLogLikelihoodTimesPrior = -3.2876e+04 Resolution 1, iteration 138 Did one deformation step of max. 0.040742 voxels in 0.92152 seconds minLogLikelihoodTimesPrior = -3.2881e+04 Resolution 1, iteration 139 Did one deformation step of max. 0.13789 voxels in 0.95206 seconds minLogLikelihoodTimesPrior = -3.2882e+04 Resolution 1, iteration 140 Did one deformation step of max. 0.023033 voxels in 0.93588 seconds minLogLikelihoodTimesPrior = -3.2884e+04 Resolution 1, iteration 141 Did one deformation step of max. 0.020272 voxels in 0.99888 seconds minLogLikelihoodTimesPrior = -3.2886e+04 Resolution 1, iteration 142 Did one deformation step of max. 0.034543 voxels in 0.93627 seconds minLogLikelihoodTimesPrior = -3.2890e+04 Resolution 1, iteration 143 Did one deformation step of max. 0.05928 voxels in 0.95118 seconds minLogLikelihoodTimesPrior = -3.2895e+04 Resolution 1, iteration 144 Did one deformation step of max. 0.10292 voxels in 0.94536 seconds minLogLikelihoodTimesPrior = -3.2902e+04 Resolution 1, iteration 145 Did one deformation step of max. 0.12123 voxels in 0.95205 seconds minLogLikelihoodTimesPrior = -3.2909e+04 Resolution 1, iteration 146 Did one deformation step of max. 0.11302 voxels in 0.93396 seconds minLogLikelihoodTimesPrior = -3.2919e+04 Resolution 1, iteration 147 Did one deformation step of max. 0.13316 voxels in 0.91004 seconds minLogLikelihoodTimesPrior = -3.2928e+04 Resolution 1, iteration 148 Did one deformation step of max. 0.13568 voxels in 0.94897 seconds minLogLikelihoodTimesPrior = -3.2934e+04 Resolution 1, iteration 149 Did one deformation step of max. 0.098908 voxels in 0.95952 seconds minLogLikelihoodTimesPrior = -3.2936e+04 Resolution 1, iteration 150 Did one deformation step of max. 0.02011 voxels in 1.9766 seconds minLogLikelihoodTimesPrior = -3.2937e+04 Resolution 1, iteration 151 Did one deformation step of max. 0.043581 voxels in 0.96394 seconds minLogLikelihoodTimesPrior = -3.2937e+04 Resolution 1, iteration 152 Did one deformation step of max. 0.0030156 voxels in 0.95879 seconds minLogLikelihoodTimesPrior = -3.2937e+04 Resolution 1, iteration 153 Did one deformation step of max. 0.0020868 voxels in 0.90691 seconds minLogLikelihoodTimesPrior = -3.2938e+04 Resolution 1, iteration 154 Did one deformation step of max. 0.003952 voxels in 0.94788 seconds minLogLikelihoodTimesPrior = -3.2938e+04 Resolution 1, iteration 155 Did one deformation step of max. 0.01096 voxels in 0.94774 seconds minLogLikelihoodTimesPrior = -3.2938e+04 Resolution 1, iteration 156 Did one deformation step of max. 0.0088892 voxels in 0.9303 seconds minLogLikelihoodTimesPrior = -3.2939e+04 Resolution 1, iteration 157 Did one deformation step of max. 0.012247 voxels in 0.93658 seconds minLogLikelihoodTimesPrior = -3.2941e+04 Resolution 1, iteration 158 Did one deformation step of max. 0.026413 voxels in 0.91315 seconds minLogLikelihoodTimesPrior = -3.2943e+04 Resolution 1, iteration 159 Did one deformation step of max. 0.036666 voxels in 0.95576 seconds minLogLikelihoodTimesPrior = -3.2947e+04 Resolution 1, iteration 160 Did one deformation step of max. 0.063606 voxels in 0.9423 seconds minLogLikelihoodTimesPrior = -3.2952e+04 Resolution 1, iteration 161 Did one deformation step of max. 0.079559 voxels in 0.96913 seconds minLogLikelihoodTimesPrior = -3.2958e+04 Resolution 1, iteration 162 Did one deformation step of max. 0.10119 voxels in 0.95449 seconds minLogLikelihoodTimesPrior = -3.2963e+04 Resolution 1, iteration 163 Did one deformation step of max. 0.011776 voxels in 3.5886 seconds minLogLikelihoodTimesPrior = -3.2963e+04 Resolution 1, iteration 164 Did one deformation step of max. 0.0028139 voxels in 0.92234 seconds minLogLikelihoodTimesPrior = -3.2964e+04 Resolution 1, iteration 165 Did one deformation step of max. 0.0066688 voxels in 0.93155 seconds minLogLikelihoodTimesPrior = -3.2965e+04 Resolution 1, iteration 166 Did one deformation step of max. 0.016136 voxels in 0.93737 seconds minLogLikelihoodTimesPrior = -3.2966e+04 Resolution 1, iteration 167 Did one deformation step of max. 0.0043185 voxels in 0.94477 seconds minLogLikelihoodTimesPrior = -3.2966e+04 Resolution 1, iteration 168 Did one deformation step of max. 0.0032515 voxels in 0.9261 seconds minLogLikelihoodTimesPrior = -3.2967e+04 Resolution 1, iteration 169 Did one deformation step of max. 0.0073438 voxels in 0.9597 seconds minLogLikelihoodTimesPrior = -3.2968e+04 Resolution 1, iteration 170 Did one deformation step of max. 0.02091 voxels in 0.96045 seconds minLogLikelihoodTimesPrior = -3.2968e+04 Resolution 1, iteration 171 Did one deformation step of max. 0.0087859 voxels in 0.96659 seconds minLogLikelihoodTimesPrior = -3.2969e+04 Resolution 1, iteration 172 Did one deformation step of max. 0.016468 voxels in 0.96157 seconds minLogLikelihoodTimesPrior = -3.2971e+04 Resolution 1, iteration 173 Did one deformation step of max. 0.027952 voxels in 0.92569 seconds minLogLikelihoodTimesPrior = -3.2973e+04 Resolution 1, iteration 174 Did one deformation step of max. 0.041609 voxels in 0.93877 seconds minLogLikelihoodTimesPrior = -3.2977e+04 Resolution 1, iteration 175 Did one deformation step of max. 0.074036 voxels in 0.93908 seconds minLogLikelihoodTimesPrior = -3.2981e+04 Resolution 1, iteration 176 Did one deformation step of max. 0.088718 voxels in 0.92387 seconds minLogLikelihoodTimesPrior = -3.2987e+04 Resolution 1, iteration 177 Did one deformation step of max. 0.1005 voxels in 0.93892 seconds minLogLikelihoodTimesPrior = -3.2996e+04 Resolution 1, iteration 178 Did one deformation step of max. 0.12552 voxels in 0.91253 seconds minLogLikelihoodTimesPrior = -3.3009e+04 Resolution 1, iteration 179 Did one deformation step of max. 0.14738 voxels in 0.95459 seconds minLogLikelihoodTimesPrior = -3.3026e+04 Resolution 1, iteration 180 Did one deformation step of max. 0.058253 voxels in 2.3039 seconds minLogLikelihoodTimesPrior = -3.3032e+04 Resolution 1, iteration 181 Did one deformation step of max. 0.051915 voxels in 1.0113 seconds minLogLikelihoodTimesPrior = -3.3041e+04 Resolution 1, iteration 182 Did one deformation step of max. 0.064642 voxels in 1.9837 seconds minLogLikelihoodTimesPrior = -3.3048e+04 Resolution 1, iteration 183 Did one deformation step of max. 0.070127 voxels in 1.4545 seconds minLogLikelihoodTimesPrior = -3.3053e+04 Resolution 1, iteration 184 Did one deformation step of max. 0.07844 voxels in 0.9594 seconds minLogLikelihoodTimesPrior = -3.3058e+04 Resolution 1, iteration 185 Did one deformation step of max. 0.049513 voxels in 1.6735 seconds minLogLikelihoodTimesPrior = -3.3061e+04 Resolution 1, iteration 186 Did one deformation step of max. 0.051736 voxels in 0.95396 seconds minLogLikelihoodTimesPrior = -3.3064e+04 Resolution 1, iteration 187 Did one deformation step of max. 0.058312 voxels in 0.91096 seconds minLogLikelihoodTimesPrior = -3.3067e+04 Resolution 1, iteration 188 Did one deformation step of max. 0.034686 voxels in 1.8743 seconds minLogLikelihoodTimesPrior = -3.3069e+04 Resolution 1, iteration 189 Did one deformation step of max. 0.054553 voxels in 0.96254 seconds minLogLikelihoodTimesPrior = -3.3071e+04 Resolution 1, iteration 190 Did one deformation step of max. 0.050626 voxels in 0.97421 seconds minLogLikelihoodTimesPrior = -3.3074e+04 Resolution 1, iteration 191 Did one deformation step of max. 0.034344 voxels in 0.96645 seconds minLogLikelihoodTimesPrior = -3.3078e+04 Resolution 1, iteration 192 Did one deformation step of max. 0.097015 voxels in 0.97493 seconds minLogLikelihoodTimesPrior = -3.3083e+04 Resolution 1, iteration 193 Did one deformation step of max. 0.064244 voxels in 0.96613 seconds minLogLikelihoodTimesPrior = -3.3089e+04 Resolution 1, iteration 194 Did one deformation step of max. 0.062062 voxels in 0.97159 seconds minLogLikelihoodTimesPrior = -3.3097e+04 Resolution 1, iteration 195 Did one deformation step of max. 0.080619 voxels in 0.97771 seconds minLogLikelihoodTimesPrior = -3.3109e+04 Resolution 1, iteration 196 Did one deformation step of max. 0.16739 voxels in 0.96417 seconds minLogLikelihoodTimesPrior = -3.3122e+04 Resolution 1, iteration 197 Did one deformation step of max. 0.1903 voxels in 0.91416 seconds minLogLikelihoodTimesPrior = -3.3131e+04 Resolution 1, iteration 198 Did one deformation step of max. 0.029398 voxels in 1.8972 seconds minLogLikelihoodTimesPrior = -3.3133e+04 Resolution 1, iteration 199 Did one deformation step of max. 0.0089262 voxels in 0.90212 seconds minLogLikelihoodTimesPrior = -3.3135e+04 Resolution 1, iteration 200 Did one deformation step of max. 0.020774 voxels in 0.91997 seconds minLogLikelihoodTimesPrior = -3.3137e+04 Smoothing mesh collection with kernel size 2.000000 ...Smoothing class: 0 Smoothing class: 1 Smoothing class: 2 Smoothing class: 3 Smoothing class: 4 Smoothing class: 5 Smoothing class: 6 Smoothing class: 7 Smoothing class: 8 Smoothing class: 9 Smoothing class: 10 Smoothing class: 11 Smoothing class: 12 done numberOfImages = 1 Image: 4 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 100.000000 precisions[0][0][1] = 100.000000 precisions[0][0][2] = 100.000000 precisions[0][0][3] = 100.000000 precisions[0][0][4] = 100.000000 precisions[0][0][5] = 100.000000 precisions[0][0][6] = 100.000000 precisions[0][0][7] = 100.000000 precisions[0][0][8] = 100.000000 precisions[0][0][9] = 100.000000 precisions[0][0][10] = 100.000000 precisions[0][0][11] = 100.000000 precisions[0][0][12] = 100.000000 means[0][0] = 18.000000 means[0][1] = 17.000000 means[0][2] = 3.000000 means[0][3] = 2.000000 means[0][4] = 4.000000 means[0][5] = 31.000000 means[0][6] = 1.000000 means[0][7] = 28.000000 means[0][8] = 12.000000 means[0][9] = 13.000000 means[0][10] = 10.000000 means[0][11] = 26.000000 means[0][12] = 11.000000 Resolution 2, iteration 1 Did one deformation step of max. 0.125 voxels in 2.1452 seconds minLogLikelihoodTimesPrior = -3.8700e+04 Resolution 2, iteration 2 Did one deformation step of max. 0.060797 voxels in 1.8263 seconds minLogLikelihoodTimesPrior = -3.8713e+04 Resolution 2, iteration 3 Did one deformation step of max. 0.028264 voxels in 1.7768 seconds minLogLikelihoodTimesPrior = -3.8719e+04 Resolution 2, iteration 4 Did one deformation step of max. 0.070968 voxels in 0.88087 seconds minLogLikelihoodTimesPrior = -3.8728e+04 Resolution 2, iteration 5 Did one deformation step of max. 0.039743 voxels in 0.92183 seconds minLogLikelihoodTimesPrior = -3.8746e+04 Resolution 2, iteration 6 Did one deformation step of max. 0.22162 voxels in 0.91738 seconds minLogLikelihoodTimesPrior = -3.8754e+04 Resolution 2, iteration 7 Did one deformation step of max. 0.12169 voxels in 0.92581 seconds minLogLikelihoodTimesPrior = -3.8766e+04 Resolution 2, iteration 8 Did one deformation step of max. 0.07478 voxels in 0.91203 seconds minLogLikelihoodTimesPrior = -3.8785e+04 Resolution 2, iteration 9 Did one deformation step of max. 0.15946 voxels in 0.90867 seconds minLogLikelihoodTimesPrior = -3.8789e+04 Resolution 2, iteration 10 Did one deformation step of max. 0.028771 voxels in 0.91799 seconds minLogLikelihoodTimesPrior = -3.8797e+04 Resolution 2, iteration 11 Did one deformation step of max. 0.0323 voxels in 0.90526 seconds minLogLikelihoodTimesPrior = -3.8809e+04 Resolution 2, iteration 12 Did one deformation step of max. 0.00090781 voxels in 0.91034 seconds minLogLikelihoodTimesPrior = -3.8820e+04 Resolution 2, iteration 13 Did one deformation step of max. 0.054721 voxels in 1.7056 seconds minLogLikelihoodTimesPrior = -3.8824e+04 Resolution 2, iteration 14 Did one deformation step of max. 0.020022 voxels in 0.89819 seconds minLogLikelihoodTimesPrior = -3.8828e+04 Resolution 2, iteration 15 Did one deformation step of max. 0.0035197 voxels in 0.92375 seconds minLogLikelihoodTimesPrior = -3.8830e+04 Resolution 2, iteration 16 Did one deformation step of max. 0.020505 voxels in 0.90775 seconds minLogLikelihoodTimesPrior = -3.8834e+04 Resolution 2, iteration 17 Did one deformation step of max. 0.041395 voxels in 0.97591 seconds minLogLikelihoodTimesPrior = -3.8837e+04 Resolution 2, iteration 18 Did one deformation step of max. 0.027416 voxels in 0.93953 seconds minLogLikelihoodTimesPrior = -3.8842e+04 Resolution 2, iteration 19 Did one deformation step of max. 0.054576 voxels in 0.9219 seconds minLogLikelihoodTimesPrior = -3.8852e+04 Resolution 2, iteration 20 Did one deformation step of max. 0.092151 voxels in 0.92727 seconds minLogLikelihoodTimesPrior = -3.8870e+04 Resolution 2, iteration 21 Did one deformation step of max. 0.0035201 voxels in 0.94294 seconds minLogLikelihoodTimesPrior = -3.8874e+04 Resolution 2, iteration 22 Did one deformation step of max. 0.031181 voxels in 0.94448 seconds minLogLikelihoodTimesPrior = -3.8885e+04 Resolution 2, iteration 23 Did one deformation step of max. 0.047589 voxels in 1.9026 seconds minLogLikelihoodTimesPrior = -3.8893e+04 Resolution 2, iteration 24 Did one deformation step of max. 0.026623 voxels in 0.94798 seconds minLogLikelihoodTimesPrior = -3.8897e+04 Resolution 2, iteration 25 Did one deformation step of max. 0.047023 voxels in 1.7834 seconds minLogLikelihoodTimesPrior = -3.8899e+04 Resolution 2, iteration 26 Did one deformation step of max. 0.029215 voxels in 0.89832 seconds minLogLikelihoodTimesPrior = -3.8901e+04 Resolution 2, iteration 27 Did one deformation step of max. 0.063293 voxels in 0.91561 seconds minLogLikelihoodTimesPrior = -3.8904e+04 Resolution 2, iteration 28 Did one deformation step of max. 0.037074 voxels in 0.92975 seconds minLogLikelihoodTimesPrior = -3.8909e+04 Resolution 2, iteration 29 Did one deformation step of max. 0.057571 voxels in 0.97963 seconds minLogLikelihoodTimesPrior = -3.8917e+04 Resolution 2, iteration 30 Did one deformation step of max. 0.057768 voxels in 0.92949 seconds minLogLikelihoodTimesPrior = -3.8930e+04 Resolution 2, iteration 31 Did one deformation step of max. 0.079502 voxels in 0.95415 seconds minLogLikelihoodTimesPrior = -3.8951e+04 Resolution 2, iteration 32 Did one deformation step of max. 0.095474 voxels in 0.96533 seconds minLogLikelihoodTimesPrior = -3.8983e+04 Resolution 2, iteration 33 Did one deformation step of max. 0.18408 voxels in 0.94499 seconds minLogLikelihoodTimesPrior = -3.8989e+04 Resolution 2, iteration 34 Did one deformation step of max. 0.004287 voxels in 3.4119 seconds minLogLikelihoodTimesPrior = -3.8990e+04 Resolution 2, iteration 35 Did one deformation step of max. 0.00023985 voxels in 0.91982 seconds minLogLikelihoodTimesPrior = -3.8990e+04 Resolution 2, iteration 36 Did one deformation step of max. 0.0013607 voxels in 2.7536 seconds minLogLikelihoodTimesPrior = -3.8990e+04 Resolution 2, iteration 37 Did one deformation step of max. 1.8495e-05 voxels in 0.94648 seconds minLogLikelihoodTimesPrior = -3.8990e+04 Resolution 2, iteration 38 Did one deformation step of max. 0.0002989 voxels in 2.9482 seconds minLogLikelihoodTimesPrior = -3.8990e+04 Resolution 2, iteration 39 Did one deformation step of max. 6.5878e-06 voxels in 0.96544 seconds minLogLikelihoodTimesPrior = -3.8990e+04 Resolution 2, iteration 40 Did one deformation step of max. 0.00020217 voxels in 2.8336 seconds minLogLikelihoodTimesPrior = -3.8990e+04 Resolution 2, iteration 41 Did one deformation step of max. 1.0395e-06 voxels in 0.97277 seconds minLogLikelihoodTimesPrior = -3.8990e+04 Resolution 2, iteration 42 Did one deformation step of max. 7.1472e-05 voxels in 2.6973 seconds minLogLikelihoodTimesPrior = -3.8990e+04 Resolution 2, iteration 43 Did one deformation step of max. 5.1912e-07 voxels in 0.92905 seconds minLogLikelihoodTimesPrior = -3.8990e+04 Resolution 2, iteration 44 Did one deformation step of max. 1.6513e-05 voxels in 4.5599 seconds minLogLikelihoodTimesPrior = -3.8990e+04 Resolution 2, iteration 45 Did one deformation step of max. 1.4709e-07 voxels in 0.94815 seconds minLogLikelihoodTimesPrior = -3.8990e+04 Resolution 2, iteration 46 Did one deformation step of max. 0 voxels in 4.7461 seconds minLogLikelihoodTimesPrior = -3.8990e+04 Fitting mesh to synthetic image from ASEG took 342.6302 seconds Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Careful here: the applied transformation will turn positive tetrahedra into negative ones. -3.34017 0.600766 -0.321038 -0.761339 1.97482 3.1701 0.0563329 -2.97953 1.44335 determinant: -40.9951 Starting to swap the point assignments of each tetrahedron... threshold mask volume at 0.5 threshold mask volume at 0.5 Constructing image-to-world transform from header information (T1resampled.mgz) Returning the following transform: AffineTransform (0x7fd1c3b6bbc0) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 195623762 Debug: Off Object Name: Observers: none Matrix: -0.33333 0 0 0 0 0.33333 0 -0.33333 0 Offset: [10.5661, -36.1663, 19.1664] Center: [0, 0, 0] Translation: [10.5661, -36.1663, 19.1664] Inverse: -3.00003 0 0 0 0 -3.00003 0 3.00003 0 Singular: 0 Constructing image-to-world transform from header information (/home/gustav/Desktop/preprocessing_h70/bert/tmp/hippoSF_T1_v10_left/imageDump.mgz) Returning the following transform: AffineTransform (0x7fd1c3cc5220) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 195626933 Debug: Off Object Name: Observers: none Matrix: 0.299933 0.00218145 0.0619217 -0.0526206 0.241939 0.149746 0.0311612 -0.117159 0.264254 Offset: [-39.4537, -31.3643, -8.96367] Center: [0, 0, 0] Translation: [-39.4537, -31.3643, -8.96367] Inverse: 3.34017 -0.321038 -0.600766 0.761339 3.1701 -1.97482 -0.0563329 1.44335 2.97953 Singular: 0 Transform before cropping: AffineTransform (0x7fd1c3cc5220) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 195626935 Debug: Off Object Name: Observers: none Matrix: -0.899807 -0.00654441 -0.185767 -0.0934846 0.35148 -0.792771 -0.157863 0.725824 0.449243 Offset: [150.061, 84.391, 14.4063] Center: [0, 0, 0] Translation: [150.061, 84.391, 14.4063] Inverse: -1.11338 0.200253 -0.107012 -0.253777 0.658266 1.05669 0.0187774 -0.993166 0.48111 Singular: 0 WorldToImageTransform before cropping: AffineTransform (0x7fd1c3c3ee60) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 195626937 Debug: Off Object Name: Observers: none Matrix: -3.00003 0 0 0 0 -3.00003 0 3.00003 0 Offset: [31.6986, 57.4997, 108.5] Center: [0, 0, 0] Translation: [31.6986, 57.4997, 108.5] Inverse: -0.33333 0 0 0 0 0.33333 0 -0.33333 0 Singular: 0 m_BoundingBoxSize: [131, 241,99] minimalMappedCoordinate: [13.3102, -5.45355,-6.11593] maximalMappedCoordinate: [150.061, 168.746,232.63] Cropping with min [0 -22 -29] and max [164 186 256] m_OriginalImageRegion before checking margins: ImageRegion (0x7fd1c3d14558) Dimension: 3 Index: [0, -22, -29] Size: [165, 209, 286] m_CroppedImageRegion before checking margins: ImageRegion (0x7fd1c3d14520) Dimension: 3 Index: [0, 0, 0] Size: [165, 209, 286] m_OriginalImageRegion after checking margins: ImageRegion (0x7fd1c3d14558) Dimension: 3 Index: [0, 0, 0] Size: [165, 178, 220] m_CroppedImageRegion after checking margins: ImageRegion (0x7fd1c3d14520) Dimension: 3 Index: [0, 22, 29] Size: [165, 178, 220] Transform after cropping: AffineTransform (0x7fd1c3cc5220) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 195630108 Debug: Off Object Name: Observers: none Matrix: -0.899807 -0.00654441 -0.185767 -0.0934846 0.35148 -0.792771 -0.157863 0.725824 0.449243 Offset: [150.061, 106.391, 43.4063] Center: [0, 0, 0] Translation: [150.061, 106.391, 43.4063] Inverse: -1.11338 0.200253 -0.107012 -0.253777 0.658266 1.05669 0.0187774 -0.993166 0.48111 Singular: 0 WorldToImageTransform after cropping: AffineTransform (0x7fd1c3c3ee60) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 195630109 Debug: Off Object Name: Observers: none Matrix: -3.00003 0 0 0 0 -3.00003 0 3.00003 0 Offset: [31.6986, 79.4997, 137.5] Center: [0, 0, 0] Translation: [31.6986, 79.4997, 137.5] Inverse: -0.33333 0 0 0 0 0.33333 0 -0.33333 0 Singular: 0 Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Careful here: the applied transformation will turn positive tetrahedra into negative ones. -0.899807 -0.00654441 -0.185767 -0.0934846 0.35148 -0.792771 -0.157863 0.725824 0.449243 determinant: -0.658636 Starting to swap the point assignments of each tetrahedron... numberOfLabels: 25 Rasterizing mesh...here: 25 here2: 25 done Reading contexts of file /usr/local/freesurfer-6.0.0/average/HippoSF/atlas/compressionLookupTable.txt -------------- Making Left-Cerebral-Cortex map to reduced label 1 Making Left-Amygdala map to reduced label 1 Making subiculum map to reduced label 1 Making Hippocampal_tail map to reduced label 1 Making GC-ML-DG map to reduced label 1 Making CA4 map to reduced label 1 Making presubiculum map to reduced label 1 Making CA1 map to reduced label 1 Making parasubiculum map to reduced label 1 Making CA3 map to reduced label 1 Making HATA map to reduced label 1 Making molecular_layer_HP map to reduced label 1 -------------- Making Left-Cerebral-White-Matter map to reduced label 2 Making fimbria map to reduced label 2 -------------- Making alveus map to reduced label 3 -------------- Making Left-Lateral-Ventricle map to reduced label 4 -------------- Making hippocampal-fissure map to reduced label 5 -------------- Making Left-Pallidum map to reduced label 6 -------------- Making Left-Putamen map to reduced label 7 -------------- Making Left-Caudate map to reduced label 8 -------------- Making Left-Thalamus-Proper map to reduced label 9 -------------- Making Left-choroid-plexus map to reduced label 10 -------------- Making Left-VentralDC map to reduced label 11 -------------- Making Left-Accumbens-area map to reduced label 12 -------------- Making Unknown map to reduced label 13 Computing hyperparameters for estimation of Gaussian parameters Estimating typical intensities of alveus numberOfLabels: 13 Rasterizing mesh...here: 13 here2: 13 done Smoothing mesh collection with kernel size 1.500000 ...Smoothing class: 0 Smoothing class: 1 Smoothing class: 2 Smoothing class: 3 Smoothing class: 4 Smoothing class: 5 Smoothing class: 6 Smoothing class: 7 Smoothing class: 8 Smoothing class: 9 Smoothing class: 10 Smoothing class: 11 Smoothing class: 12 done numberOfImages = 1 Image: 0 Iteration 1 of 7 numberOfLabels: 13 Rasterizing mesh...here: 13 here2: 13 done minLogLikelihood = 2.1981e+06 minLogLikelihood = 2.1542e+06 minLogLikelihood = 2.1501e+06 minLogLikelihood = 2.1496e+06 minLogLikelihood = 2.1495e+06 minLogLikelihood = 2.1495e+06 minLogLikelihood = 2.1494e+06 EM converged! ans = 75.4589 98.7174 85.3228 33.5105 64.2484 96.8632 85.9560 79.0000 89.8188 61.9626 92.0516 72.0004 44.6157 ans = 1.0e+06 * 0.0014 0.0027 0.0085 1.3216 0.0012 0.0001 0.0004 0.0001 0.0107 0.0544 0.0010 0.0045 0.0602 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.026972 precisions[0][0][1] = 0.019097 precisions[0][0][2] = 0.010847 precisions[0][0][3] = 0.000870 precisions[0][0][4] = 0.029092 precisions[0][0][5] = 0.107722 precisions[0][0][6] = 0.050458 precisions[0][0][7] = 0.127921 precisions[0][0][8] = 0.009676 precisions[0][0][9] = 0.004286 precisions[0][0][10] = 0.031691 precisions[0][0][11] = 0.014961 precisions[0][0][12] = 0.004075 means[0][0] = 75.458923 means[0][1] = 98.717384 means[0][2] = 85.322754 means[0][3] = 33.510498 means[0][4] = 64.248405 means[0][5] = 96.863220 means[0][6] = 85.956001 means[0][7] = 78.999977 means[0][8] = 89.818779 means[0][9] = 61.962601 means[0][10] = 92.051628 means[0][11] = 72.000366 means[0][12] = 44.615658 Resolution level 1 iteration 1 deformation iterations 1 Did one deformation step of max. 0.5 voxels in 4.9482 seconds minLogLikelihoodTimesPrior = 2.1844e+06 Resolution level 1 iteration 1 deformation iterations 2 Did one deformation step of max. 0.23796 voxels in 1.8152 seconds minLogLikelihoodTimesPrior = 2.1841e+06 Resolution level 1 iteration 1 deformation iterations 3 Did one deformation step of max. 0.049894 voxels in 1.8114 seconds minLogLikelihoodTimesPrior = 2.1835e+06 Resolution level 1 iteration 1 deformation iterations 4 Did one deformation step of max. 0.099548 voxels in 1.8354 seconds minLogLikelihoodTimesPrior = 2.1827e+06 Resolution level 1 iteration 1 deformation iterations 5 Did one deformation step of max. 0.077561 voxels in 3.6215 seconds minLogLikelihoodTimesPrior = 2.1819e+06 Resolution level 1 iteration 1 deformation iterations 6 Did one deformation step of max. 0.0025707 voxels in 15.0583 seconds minLogLikelihoodTimesPrior = 2.1819e+06 Resolution level 1 iteration 1 deformation iterations 7 Did one deformation step of max. 0.00055785 voxels in 1.766 seconds minLogLikelihoodTimesPrior = 2.1819e+06 Resolution level 1 iteration 1 deformation iterations 8 Did one deformation step of max. 0.00085369 voxels in 10.5967 seconds minLogLikelihoodTimesPrior = 2.1819e+06 Resolution level 1 iteration 1 deformation iterations 9 Did one deformation step of max. 2.7926e-06 voxels in 1.7862 seconds minLogLikelihoodTimesPrior = 2.1819e+06 Resolution level 1 iteration 1 deformation iterations 10 Did one deformation step of max. 0.00013707 voxels in 1.7374 seconds minLogLikelihoodTimesPrior = 2.1819e+06 Resolution level 1 iteration 1 deformation iterations 11 Did one deformation step of max. 8.5072e-06 voxels in 1.718 seconds minLogLikelihoodTimesPrior = 2.1819e+06 Resolution level 1 iteration 1 deformation iterations 12 Did one deformation step of max. 6.1119e-05 voxels in 1.7204 seconds minLogLikelihoodTimesPrior = 2.1819e+06 Resolution level 1 iteration 1 deformation iterations 13 Did one deformation step of max. 3.5545e-05 voxels in 1.7327 seconds minLogLikelihoodTimesPrior = 2.1819e+06 Resolution level 1 iteration 1 deformation iterations 14 Did one deformation step of max. 0.00035952 voxels in 1.7664 seconds minLogLikelihoodTimesPrior = 2.1819e+06 Resolution level 1 iteration 1 deformation iterations 15 Did one deformation step of max. 0.00013122 voxels in 1.7365 seconds minLogLikelihoodTimesPrior = 2.1819e+06 Resolution level 1 iteration 1 deformation iterations 16 Did one deformation step of max. 0.00097433 voxels in 1.722 seconds minLogLikelihoodTimesPrior = 2.1819e+06 Resolution level 1 iteration 1 deformation iterations 17 Did one deformation step of max. 0.00037449 voxels in 1.8536 seconds minLogLikelihoodTimesPrior = 2.1819e+06 Resolution level 1 iteration 1 deformation iterations 18 Did one deformation step of max. 0.0024215 voxels in 3.5957 seconds minLogLikelihoodTimesPrior = 2.1819e+06 Resolution level 1 iteration 1 deformation iterations 19 Did one deformation step of max. 3.3651e-05 voxels in 1.7343 seconds minLogLikelihoodTimesPrior = 2.1819e+06 Resolution level 1 iteration 1 deformation iterations 20 Did one deformation step of max. 0.0003114 voxels in 1.7345 seconds minLogLikelihoodTimesPrior = 2.1819e+06 Iteration 2 of 7 numberOfLabels: 13 Rasterizing mesh...here: 13 here2: 13 done minLogLikelihood = 2.1480e+06 minLogLikelihood = 2.1480e+06 EM converged! ans = 75.4603 98.7243 85.3396 33.5057 64.2424 96.8636 85.9560 79.0000 89.8218 61.9401 92.0530 72.0004 44.6182 ans = 1.0e+06 * 0.0014 0.0027 0.0079 1.3174 0.0011 0.0001 0.0004 0.0001 0.0105 0.0540 0.0010 0.0045 0.0601 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.027039 precisions[0][0][1] = 0.019156 precisions[0][0][2] = 0.011269 precisions[0][0][3] = 0.000871 precisions[0][0][4] = 0.030562 precisions[0][0][5] = 0.108133 precisions[0][0][6] = 0.050729 precisions[0][0][7] = 0.137279 precisions[0][0][8] = 0.009770 precisions[0][0][9] = 0.004304 precisions[0][0][10] = 0.031843 precisions[0][0][11] = 0.014865 precisions[0][0][12] = 0.004078 means[0][0] = 75.460335 means[0][1] = 98.724251 means[0][2] = 85.339577 means[0][3] = 33.505718 means[0][4] = 64.242355 means[0][5] = 96.863625 means[0][6] = 85.955963 means[0][7] = 78.999977 means[0][8] = 89.821785 means[0][9] = 61.940105 means[0][10] = 92.052986 means[0][11] = 72.000366 means[0][12] = 44.618244 Resolution level 1 iteration 2 deformation iterations 1 Did one deformation step of max. 0.5 voxels in 4.3176 seconds minLogLikelihoodTimesPrior = 2.1817e+06 Resolution level 1 iteration 2 deformation iterations 2 Did one deformation step of max. 0.076901 voxels in 1.6689 seconds minLogLikelihoodTimesPrior = 2.1815e+06 Resolution level 1 iteration 2 deformation iterations 3 Did one deformation step of max. 0.04381 voxels in 1.7075 seconds minLogLikelihoodTimesPrior = 2.1810e+06 Resolution level 1 iteration 2 deformation iterations 4 Did one deformation step of max. 0.44171 voxels in 1.723 seconds minLogLikelihoodTimesPrior = 2.1801e+06 Resolution level 1 iteration 2 deformation iterations 5 Did one deformation step of max. 0.26554 voxels in 1.6902 seconds minLogLikelihoodTimesPrior = 2.1783e+06 Resolution level 1 iteration 2 deformation iterations 6 Did one deformation step of max. 0.22994 voxels in 3.0734 seconds minLogLikelihoodTimesPrior = 2.1775e+06 Resolution level 1 iteration 2 deformation iterations 7 Did one deformation step of max. 0.25158 voxels in 1.7149 seconds minLogLikelihoodTimesPrior = 2.1758e+06 Resolution level 1 iteration 2 deformation iterations 8 Did one deformation step of max. 0.30999 voxels in 1.9108 seconds minLogLikelihoodTimesPrior = 2.1743e+06 Resolution level 1 iteration 2 deformation iterations 9 Did one deformation step of max. 0.39715 voxels in 1.7612 seconds minLogLikelihoodTimesPrior = 2.1713e+06 Resolution level 1 iteration 2 deformation iterations 10 Did one deformation step of max. 0.26524 voxels in 2.0685 seconds minLogLikelihoodTimesPrior = 2.1699e+06 Resolution level 1 iteration 2 deformation iterations 11 Did one deformation step of max. 0.19118 voxels in 3.0287 seconds minLogLikelihoodTimesPrior = 2.1686e+06 Resolution level 1 iteration 2 deformation iterations 12 Did one deformation step of max. 0.20161 voxels in 1.8861 seconds minLogLikelihoodTimesPrior = 2.1672e+06 Resolution level 1 iteration 2 deformation iterations 13 Did one deformation step of max. 0.12798 voxels in 3.0744 seconds minLogLikelihoodTimesPrior = 2.1660e+06 Resolution level 1 iteration 2 deformation iterations 14 Did one deformation step of max. 0.21033 voxels in 1.78 seconds minLogLikelihoodTimesPrior = 2.1648e+06 Resolution level 1 iteration 2 deformation iterations 15 Did one deformation step of max. 0.054226 voxels in 2.7273 seconds minLogLikelihoodTimesPrior = 2.1642e+06 Resolution level 1 iteration 2 deformation iterations 16 Did one deformation step of max. 0.21563 voxels in 1.7317 seconds minLogLikelihoodTimesPrior = 2.1641e+06 Resolution level 1 iteration 2 deformation iterations 17 Did one deformation step of max. 0.033065 voxels in 1.691 seconds minLogLikelihoodTimesPrior = 2.1639e+06 Resolution level 1 iteration 2 deformation iterations 18 Did one deformation step of max. 0.039363 voxels in 1.7315 seconds minLogLikelihoodTimesPrior = 2.1635e+06 Resolution level 1 iteration 2 deformation iterations 19 Did one deformation step of max. 0.077139 voxels in 1.6891 seconds minLogLikelihoodTimesPrior = 2.1628e+06 Resolution level 1 iteration 2 deformation iterations 20 Did one deformation step of max. 0.10271 voxels in 2.1847 seconds minLogLikelihoodTimesPrior = 2.1620e+06 Iteration 3 of 7 numberOfLabels: 13 Rasterizing mesh...here: 13 here2: 13 done minLogLikelihood = 2.1344e+06 minLogLikelihood = 2.1342e+06 minLogLikelihood = 2.1342e+06 minLogLikelihood = 2.1342e+06 EM converged! ans = 75.4853 98.7961 85.3946 33.4258 64.2258 96.8667 85.9550 79.0000 89.8586 61.7648 92.0637 72.0004 44.6590 ans = 1.0e+06 * 0.0013 0.0025 0.0062 1.2856 0.0008 0.0001 0.0004 0.0000 0.0081 0.0507 0.0009 0.0048 0.0593 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.027753 precisions[0][0][1] = 0.019811 precisions[0][0][2] = 0.012730 precisions[0][0][3] = 0.000882 precisions[0][0][4] = 0.035015 precisions[0][0][5] = 0.110392 precisions[0][0][6] = 0.051819 precisions[0][0][7] = 0.164604 precisions[0][0][8] = 0.011137 precisions[0][0][9] = 0.004442 precisions[0][0][10] = 0.033631 precisions[0][0][11] = 0.014494 precisions[0][0][12] = 0.004106 means[0][0] = 75.485313 means[0][1] = 98.796082 means[0][2] = 85.394577 means[0][3] = 33.425823 means[0][4] = 64.225754 means[0][5] = 96.866745 means[0][6] = 85.955040 means[0][7] = 78.999977 means[0][8] = 89.858559 means[0][9] = 61.764778 means[0][10] = 92.063675 means[0][11] = 72.000389 means[0][12] = 44.659027 Resolution level 1 iteration 3 deformation iterations 1 Did one deformation step of max. 0.5 voxels in 4.1218 seconds minLogLikelihoodTimesPrior = 2.1611e+06 Resolution level 1 iteration 3 deformation iterations 2 Did one deformation step of max. 0.2972 voxels in 1.8022 seconds minLogLikelihoodTimesPrior = 2.1597e+06 Resolution level 1 iteration 3 deformation iterations 3 Did one deformation step of max. 0.031655 voxels in 7.9038 seconds minLogLikelihoodTimesPrior = 2.1596e+06 Resolution level 1 iteration 3 deformation iterations 4 Did one deformation step of max. 0.084227 voxels in 1.7345 seconds minLogLikelihoodTimesPrior = 2.1595e+06 Resolution level 1 iteration 3 deformation iterations 5 Did one deformation step of max. 0.019745 voxels in 1.7517 seconds minLogLikelihoodTimesPrior = 2.1594e+06 Resolution level 1 iteration 3 deformation iterations 6 Did one deformation step of max. 0.077644 voxels in 1.7663 seconds minLogLikelihoodTimesPrior = 2.1591e+06 Resolution level 1 iteration 3 deformation iterations 7 Did one deformation step of max. 0.086724 voxels in 1.7858 seconds minLogLikelihoodTimesPrior = 2.1587e+06 Resolution level 1 iteration 3 deformation iterations 8 Did one deformation step of max. 0.11816 voxels in 1.8005 seconds minLogLikelihoodTimesPrior = 2.1583e+06 Resolution level 1 iteration 3 deformation iterations 9 Did one deformation step of max. 0.065278 voxels in 1.725 seconds minLogLikelihoodTimesPrior = 2.1576e+06 Resolution level 1 iteration 3 deformation iterations 10 Did one deformation step of max. 0.0060608 voxels in 1.7715 seconds minLogLikelihoodTimesPrior = 2.1572e+06 Resolution level 1 iteration 3 deformation iterations 11 Did one deformation step of max. 0.23723 voxels in 1.7549 seconds minLogLikelihoodTimesPrior = 2.1564e+06 Resolution level 1 iteration 3 deformation iterations 12 Did one deformation step of max. 0.24692 voxels in 1.7977 seconds minLogLikelihoodTimesPrior = 2.1554e+06 Resolution level 1 iteration 3 deformation iterations 13 Did one deformation step of max. 0.4837 voxels in 2.4693 seconds minLogLikelihoodTimesPrior = 2.1553e+06 Resolution level 1 iteration 3 deformation iterations 14 Did one deformation step of max. 0.16109 voxels in 1.7233 seconds minLogLikelihoodTimesPrior = 2.1550e+06 Resolution level 1 iteration 3 deformation iterations 15 Did one deformation step of max. 0.27621 voxels in 1.7655 seconds minLogLikelihoodTimesPrior = 2.1546e+06 Resolution level 1 iteration 3 deformation iterations 16 Did one deformation step of max. 0.20268 voxels in 1.8118 seconds minLogLikelihoodTimesPrior = 2.1536e+06 Resolution level 1 iteration 3 deformation iterations 17 Did one deformation step of max. 0.24513 voxels in 1.8523 seconds minLogLikelihoodTimesPrior = 2.1527e+06 Resolution level 1 iteration 3 deformation iterations 18 Did one deformation step of max. 0.25364 voxels in 1.7864 seconds minLogLikelihoodTimesPrior = 2.1510e+06 Resolution level 1 iteration 3 deformation iterations 19 Did one deformation step of max. 0.32118 voxels in 1.814 seconds minLogLikelihoodTimesPrior = 2.1498e+06 Resolution level 1 iteration 3 deformation iterations 20 Did one deformation step of max. 0.045445 voxels in 3.7449 seconds minLogLikelihoodTimesPrior = 2.1495e+06 Iteration 4 of 7 numberOfLabels: 13 Rasterizing mesh...here: 13 here2: 13 done minLogLikelihood = 2.1239e+06 minLogLikelihood = 2.1238e+06 minLogLikelihood = 2.1238e+06 EM converged! ans = 75.5025 98.8440 85.4341 33.3589 64.2163 96.8708 85.9553 79.0000 89.8827 61.6319 92.0673 72.0004 44.6960 ans = 1.0e+06 * 0.0012 0.0024 0.0052 1.2680 0.0007 0.0001 0.0004 0.0000 0.0066 0.0487 0.0008 0.0047 0.0590 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.028311 precisions[0][0][1] = 0.020264 precisions[0][0][2] = 0.013931 precisions[0][0][3] = 0.000888 precisions[0][0][4] = 0.038093 precisions[0][0][5] = 0.112499 precisions[0][0][6] = 0.052680 precisions[0][0][7] = 0.185073 precisions[0][0][8] = 0.012275 precisions[0][0][9] = 0.004531 precisions[0][0][10] = 0.034925 precisions[0][0][11] = 0.014662 precisions[0][0][12] = 0.004118 means[0][0] = 75.502518 means[0][1] = 98.844002 means[0][2] = 85.434120 means[0][3] = 33.358921 means[0][4] = 64.216347 means[0][5] = 96.870781 means[0][6] = 85.955284 means[0][7] = 78.999977 means[0][8] = 89.882713 means[0][9] = 61.631939 means[0][10] = 92.067337 means[0][11] = 72.000397 means[0][12] = 44.696018 Resolution level 1 iteration 4 deformation iterations 1 Did one deformation step of max. 0.5 voxels in 4.0028 seconds minLogLikelihoodTimesPrior = 2.1491e+06 Resolution level 1 iteration 4 deformation iterations 2 Did one deformation step of max. 0.4084 voxels in 1.687 seconds minLogLikelihoodTimesPrior = 2.1489e+06 Resolution level 1 iteration 4 deformation iterations 3 Did one deformation step of max. 0.079062 voxels in 1.7487 seconds minLogLikelihoodTimesPrior = 2.1486e+06 Resolution level 1 iteration 4 deformation iterations 4 Did one deformation step of max. 0.31124 voxels in 1.924 seconds minLogLikelihoodTimesPrior = 2.1485e+06 Resolution level 1 iteration 4 deformation iterations 5 Did one deformation step of max. 0.092658 voxels in 1.7114 seconds minLogLikelihoodTimesPrior = 2.1483e+06 Resolution level 1 iteration 4 deformation iterations 6 Did one deformation step of max. 0.10721 voxels in 1.7452 seconds minLogLikelihoodTimesPrior = 2.1479e+06 Resolution level 1 iteration 4 deformation iterations 7 Did one deformation step of max. 0.44096 voxels in 1.7257 seconds minLogLikelihoodTimesPrior = 2.1478e+06 Resolution level 1 iteration 4 deformation iterations 8 Did one deformation step of max. 0.041146 voxels in 1.773 seconds minLogLikelihoodTimesPrior = 2.1476e+06 Resolution level 1 iteration 4 deformation iterations 9 Did one deformation step of max. 0.13811 voxels in 1.7659 seconds minLogLikelihoodTimesPrior = 2.1473e+06 Resolution level 1 iteration 4 deformation iterations 10 Did one deformation step of max. 0.12357 voxels in 1.7286 seconds minLogLikelihoodTimesPrior = 2.1466e+06 Resolution level 1 iteration 4 deformation iterations 11 Did one deformation step of max. 0.23842 voxels in 1.8178 seconds minLogLikelihoodTimesPrior = 2.1460e+06 Resolution level 1 iteration 4 deformation iterations 12 Did one deformation step of max. 0.18833 voxels in 1.7878 seconds minLogLikelihoodTimesPrior = 2.1447e+06 Resolution level 1 iteration 4 deformation iterations 13 Did one deformation step of max. 0.23107 voxels in 1.837 seconds minLogLikelihoodTimesPrior = 2.1442e+06 Resolution level 1 iteration 4 deformation iterations 14 Did one deformation step of max. 0.19916 voxels in 1.6913 seconds minLogLikelihoodTimesPrior = 2.1432e+06 Resolution level 1 iteration 4 deformation iterations 15 Did one deformation step of max. 0.093333 voxels in 3.3602 seconds minLogLikelihoodTimesPrior = 2.1431e+06 Resolution level 1 iteration 4 deformation iterations 16 Did one deformation step of max. 0.0040026 voxels in 1.7109 seconds minLogLikelihoodTimesPrior = 2.1431e+06 Resolution level 1 iteration 4 deformation iterations 17 Did one deformation step of max. 0.0021257 voxels in 1.7138 seconds minLogLikelihoodTimesPrior = 2.1431e+06 Resolution level 1 iteration 4 deformation iterations 18 Did one deformation step of max. 0.048209 voxels in 1.7086 seconds minLogLikelihoodTimesPrior = 2.1430e+06 Resolution level 1 iteration 4 deformation iterations 19 Did one deformation step of max. 0.0092783 voxels in 1.7043 seconds minLogLikelihoodTimesPrior = 2.1430e+06 Resolution level 1 iteration 4 deformation iterations 20 Did one deformation step of max. 0.03842 voxels in 1.7172 seconds minLogLikelihoodTimesPrior = 2.1429e+06 Iteration 5 of 7 numberOfLabels: 13 Rasterizing mesh...here: 13 here2: 13 done minLogLikelihood = 2.1185e+06 minLogLikelihood = 2.1185e+06 minLogLikelihood = 2.1185e+06 EM converged! ans = 75.5119 98.8727 85.4701 33.3296 64.2089 96.8741 85.9556 79.0000 89.8962 61.5474 92.0678 72.0004 44.7273 ans = 1.0e+06 * 0.0012 0.0024 0.0043 1.2625 0.0006 0.0001 0.0004 0.0000 0.0059 0.0475 0.0008 0.0046 0.0590 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.028635 precisions[0][0][1] = 0.020527 precisions[0][0][2] = 0.015317 precisions[0][0][3] = 0.000890 precisions[0][0][4] = 0.041049 precisions[0][0][5] = 0.114034 precisions[0][0][6] = 0.053207 precisions[0][0][7] = 0.209301 precisions[0][0][8] = 0.013062 precisions[0][0][9] = 0.004588 precisions[0][0][10] = 0.035709 precisions[0][0][11] = 0.014687 precisions[0][0][12] = 0.004117 means[0][0] = 75.511894 means[0][1] = 98.872696 means[0][2] = 85.470085 means[0][3] = 33.329605 means[0][4] = 64.208900 means[0][5] = 96.874123 means[0][6] = 85.955612 means[0][7] = 78.999977 means[0][8] = 89.896225 means[0][9] = 61.547394 means[0][10] = 92.067795 means[0][11] = 72.000427 means[0][12] = 44.727280 Resolution level 1 iteration 5 deformation iterations 1 Did one deformation step of max. 0.5 voxels in 5.3005 seconds minLogLikelihoodTimesPrior = 2.1428e+06 Resolution level 1 iteration 5 deformation iterations 2 Did one deformation step of max. 0.049929 voxels in 1.7692 seconds minLogLikelihoodTimesPrior = 2.1427e+06 Resolution level 1 iteration 5 deformation iterations 3 Did one deformation step of max. 0.33145 voxels in 1.8785 seconds minLogLikelihoodTimesPrior = 2.1427e+06 Resolution level 1 iteration 5 deformation iterations 4 Did one deformation step of max. 0.020493 voxels in 1.7645 seconds minLogLikelihoodTimesPrior = 2.1426e+06 Resolution level 1 iteration 5 deformation iterations 5 Did one deformation step of max. 0.07655 voxels in 1.7317 seconds minLogLikelihoodTimesPrior = 2.1425e+06 Resolution level 1 iteration 5 deformation iterations 6 Did one deformation step of max. 0.090095 voxels in 1.6876 seconds minLogLikelihoodTimesPrior = 2.1423e+06 Resolution level 1 iteration 5 deformation iterations 7 Did one deformation step of max. 0.059484 voxels in 1.7267 seconds minLogLikelihoodTimesPrior = 2.1419e+06 Resolution level 1 iteration 5 deformation iterations 8 Did one deformation step of max. 0.1173 voxels in 1.7983 seconds minLogLikelihoodTimesPrior = 2.1411e+06 Resolution level 1 iteration 5 deformation iterations 9 Did one deformation step of max. 0.2321 voxels in 1.8667 seconds minLogLikelihoodTimesPrior = 2.1395e+06 Resolution level 1 iteration 5 deformation iterations 10 Did one deformation step of max. 0.56951 voxels in 1.7302 seconds minLogLikelihoodTimesPrior = 2.1369e+06 Resolution level 1 iteration 5 deformation iterations 11 Did one deformation step of max. 0.67436 voxels in 1.9558 seconds minLogLikelihoodTimesPrior = 2.1350e+06 Resolution level 1 iteration 5 deformation iterations 12 Did one deformation step of max. 0.24654 voxels in 3.6065 seconds minLogLikelihoodTimesPrior = 2.1343e+06 Resolution level 1 iteration 5 deformation iterations 13 Did one deformation step of max. 0.055344 voxels in 6.8977 seconds minLogLikelihoodTimesPrior = 2.1343e+06 Resolution level 1 iteration 5 deformation iterations 14 Did one deformation step of max. 0.0051612 voxels in 1.7245 seconds minLogLikelihoodTimesPrior = 2.1343e+06 Resolution level 1 iteration 5 deformation iterations 15 Did one deformation step of max. 0.010104 voxels in 1.6768 seconds minLogLikelihoodTimesPrior = 2.1343e+06 Resolution level 1 iteration 5 deformation iterations 16 Did one deformation step of max. 0.04425 voxels in 1.7056 seconds minLogLikelihoodTimesPrior = 2.1342e+06 Resolution level 1 iteration 5 deformation iterations 17 Did one deformation step of max. 0.037993 voxels in 1.7126 seconds minLogLikelihoodTimesPrior = 2.1342e+06 Resolution level 1 iteration 5 deformation iterations 18 Did one deformation step of max. 0.12121 voxels in 1.732 seconds minLogLikelihoodTimesPrior = 2.1341e+06 Resolution level 1 iteration 5 deformation iterations 19 Did one deformation step of max. 0.10171 voxels in 1.7028 seconds minLogLikelihoodTimesPrior = 2.1340e+06 Resolution level 1 iteration 5 deformation iterations 20 Did one deformation step of max. 0.4272 voxels in 1.7082 seconds minLogLikelihoodTimesPrior = 2.1338e+06 Iteration 6 of 7 numberOfLabels: 13 Rasterizing mesh...here: 13 here2: 13 done minLogLikelihood = 2.1104e+06 minLogLikelihood = 2.1103e+06 minLogLikelihood = 2.1103e+06 minLogLikelihood = 2.1103e+06 EM converged! ans = 75.5256 98.9191 85.5329 33.2857 64.1983 96.8815 85.9567 79.0000 89.9162 61.4352 92.0647 72.0005 44.7788 ans = 1.0e+06 * 0.0012 0.0023 0.0029 1.2599 0.0005 0.0001 0.0003 0.0000 0.0048 0.0458 0.0007 0.0046 0.0591 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.029151 precisions[0][0][1] = 0.020950 precisions[0][0][2] = 0.018457 precisions[0][0][3] = 0.000891 precisions[0][0][4] = 0.046099 precisions[0][0][5] = 0.117119 precisions[0][0][6] = 0.054177 precisions[0][0][7] = 0.255192 precisions[0][0][8] = 0.014506 precisions[0][0][9] = 0.004672 precisions[0][0][10] = 0.036914 precisions[0][0][11] = 0.014728 precisions[0][0][12] = 0.004113 means[0][0] = 75.525627 means[0][1] = 98.919106 means[0][2] = 85.532936 means[0][3] = 33.285675 means[0][4] = 64.198318 means[0][5] = 96.881538 means[0][6] = 85.956680 means[0][7] = 78.999977 means[0][8] = 89.916237 means[0][9] = 61.435230 means[0][10] = 92.064682 means[0][11] = 72.000473 means[0][12] = 44.778786 Resolution level 1 iteration 6 deformation iterations 1 Did one deformation step of max. 0.5 voxels in 5.2925 seconds minLogLikelihoodTimesPrior = 2.1337e+06 Resolution level 1 iteration 6 deformation iterations 2 Did one deformation step of max. 0.04001 voxels in 1.6957 seconds minLogLikelihoodTimesPrior = 2.1337e+06 Resolution level 1 iteration 6 deformation iterations 3 Did one deformation step of max. 0.39268 voxels in 1.7663 seconds minLogLikelihoodTimesPrior = 2.1335e+06 Resolution level 1 iteration 6 deformation iterations 4 Did one deformation step of max. 0.12497 voxels in 1.73 seconds minLogLikelihoodTimesPrior = 2.1333e+06 Resolution level 1 iteration 6 deformation iterations 5 Did one deformation step of max. 0.19169 voxels in 1.7595 seconds minLogLikelihoodTimesPrior = 2.1330e+06 Resolution level 1 iteration 6 deformation iterations 6 Did one deformation step of max. 0.32453 voxels in 1.9416 seconds minLogLikelihoodTimesPrior = 2.1328e+06 Resolution level 1 iteration 6 deformation iterations 7 Did one deformation step of max. 0.18871 voxels in 1.7324 seconds minLogLikelihoodTimesPrior = 2.1323e+06 Resolution level 1 iteration 6 deformation iterations 8 Did one deformation step of max. 0.25464 voxels in 1.7685 seconds minLogLikelihoodTimesPrior = 2.1316e+06 Resolution level 1 iteration 6 deformation iterations 9 Did one deformation step of max. 0.09518 voxels in 2.4519 seconds minLogLikelihoodTimesPrior = 2.1313e+06 Resolution level 1 iteration 6 deformation iterations 10 Did one deformation step of max. 0.41833 voxels in 2.4273 seconds minLogLikelihoodTimesPrior = 2.1311e+06 Resolution level 1 iteration 6 deformation iterations 11 Did one deformation step of max. 0.15599 voxels in 1.8027 seconds minLogLikelihoodTimesPrior = 2.1308e+06 Resolution level 1 iteration 6 deformation iterations 12 Did one deformation step of max. 0.03181 voxels in 5.3812 seconds minLogLikelihoodTimesPrior = 2.1308e+06 Resolution level 1 iteration 6 deformation iterations 13 Did one deformation step of max. 0.012587 voxels in 1.7727 seconds minLogLikelihoodTimesPrior = 2.1308e+06 Resolution level 1 iteration 6 deformation iterations 14 Did one deformation step of max. 0.012067 voxels in 1.7716 seconds minLogLikelihoodTimesPrior = 2.1307e+06 Resolution level 1 iteration 6 deformation iterations 15 Did one deformation step of max. 0.1033 voxels in 1.7569 seconds minLogLikelihoodTimesPrior = 2.1307e+06 Resolution level 1 iteration 6 deformation iterations 16 Did one deformation step of max. 0.036127 voxels in 1.7432 seconds minLogLikelihoodTimesPrior = 2.1307e+06 Resolution level 1 iteration 6 deformation iterations 17 Did one deformation step of max. 0.094876 voxels in 1.7157 seconds minLogLikelihoodTimesPrior = 2.1306e+06 Resolution level 1 iteration 6 deformation iterations 18 Did one deformation step of max. 0.1188 voxels in 1.7317 seconds minLogLikelihoodTimesPrior = 2.1306e+06 Resolution level 1 iteration 6 deformation iterations 19 Did one deformation step of max. 0.064394 voxels in 1.8059 seconds minLogLikelihoodTimesPrior = 2.1304e+06 Resolution level 1 iteration 6 deformation iterations 20 Did one deformation step of max. 0.080501 voxels in 1.778 seconds minLogLikelihoodTimesPrior = 2.1301e+06 Iteration 7 of 7 numberOfLabels: 13 Rasterizing mesh...here: 13 here2: 13 done minLogLikelihood = 2.1077e+06 minLogLikelihood = 2.1077e+06 minLogLikelihood = 2.1077e+06 EM converged! ans = 75.5291 98.9380 85.5680 33.2696 64.1939 96.8861 85.9575 79.0000 89.9233 61.4210 92.0615 72.0005 44.7988 ans = 1.0e+06 * 0.0012 0.0022 0.0023 1.2623 0.0004 0.0001 0.0003 0.0000 0.0044 0.0453 0.0007 0.0045 0.0592 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.029331 precisions[0][0][1] = 0.021112 precisions[0][0][2] = 0.020821 precisions[0][0][3] = 0.000890 precisions[0][0][4] = 0.048597 precisions[0][0][5] = 0.118607 precisions[0][0][6] = 0.054553 precisions[0][0][7] = 0.290987 precisions[0][0][8] = 0.015122 precisions[0][0][9] = 0.004699 precisions[0][0][10] = 0.037293 precisions[0][0][11] = 0.014831 precisions[0][0][12] = 0.004110 means[0][0] = 75.529144 means[0][1] = 98.938004 means[0][2] = 85.568047 means[0][3] = 33.269581 means[0][4] = 64.193947 means[0][5] = 96.886055 means[0][6] = 85.957474 means[0][7] = 78.999977 means[0][8] = 89.923264 means[0][9] = 61.421032 means[0][10] = 92.061478 means[0][11] = 72.000488 means[0][12] = 44.798756 Resolution level 1 iteration 7 deformation iterations 1 Did one deformation step of max. 0.125 voxels in 3.9943 seconds minLogLikelihoodTimesPrior = 2.1297e+06 Resolution level 1 iteration 7 deformation iterations 2 Did one deformation step of max. 0.0651 voxels in 2.3143 seconds minLogLikelihoodTimesPrior = 2.1294e+06 Resolution level 1 iteration 7 deformation iterations 3 Did one deformation step of max. 0.002483 voxels in 15.8223 seconds minLogLikelihoodTimesPrior = 2.1294e+06 Resolution level 1 iteration 7 deformation iterations 4 Did one deformation step of max. 0.00031406 voxels in 1.8112 seconds minLogLikelihoodTimesPrior = 2.1294e+06 Resolution level 1 iteration 7 deformation iterations 5 Did one deformation step of max. 0.00078281 voxels in 12.0481 seconds minLogLikelihoodTimesPrior = 2.1294e+06 Resolution level 1 iteration 7 deformation iterations 6 Did one deformation step of max. 1.6547e-05 voxels in 1.6974 seconds minLogLikelihoodTimesPrior = 2.1294e+06 Resolution level 1 iteration 7 deformation iterations 7 Did one deformation step of max. 0.00010117 voxels in 1.7339 seconds minLogLikelihoodTimesPrior = 2.1294e+06 Resolution level 1 iteration 7 deformation iterations 8 Did one deformation step of max. 0.00018769 voxels in 1.7279 seconds minLogLikelihoodTimesPrior = 2.1294e+06 Resolution level 1 iteration 7 deformation iterations 9 Did one deformation step of max. 0.00043346 voxels in 1.7665 seconds minLogLikelihoodTimesPrior = 2.1294e+06 Resolution level 1 iteration 7 deformation iterations 10 Did one deformation step of max. 0.00088907 voxels in 1.7176 seconds minLogLikelihoodTimesPrior = 2.1294e+06 Resolution level 1 iteration 7 deformation iterations 11 Did one deformation step of max. 0.0015944 voxels in 1.7358 seconds minLogLikelihoodTimesPrior = 2.1294e+06 Resolution level 1 iteration 7 deformation iterations 12 Did one deformation step of max. 0.0029798 voxels in 1.7308 seconds minLogLikelihoodTimesPrior = 2.1294e+06 Resolution level 1 iteration 7 deformation iterations 13 Did one deformation step of max. 0.0071898 voxels in 1.7231 seconds minLogLikelihoodTimesPrior = 2.1294e+06 Resolution level 1 iteration 7 deformation iterations 14 Did one deformation step of max. 0.011215 voxels in 1.7363 seconds minLogLikelihoodTimesPrior = 2.1294e+06 Resolution level 1 iteration 7 deformation iterations 15 Did one deformation step of max. 0.015782 voxels in 1.7317 seconds minLogLikelihoodTimesPrior = 2.1293e+06 Resolution level 1 iteration 7 deformation iterations 16 Did one deformation step of max. 0.067293 voxels in 1.7279 seconds minLogLikelihoodTimesPrior = 2.1293e+06 Resolution level 1 iteration 7 deformation iterations 17 Did one deformation step of max. 0.018485 voxels in 1.7593 seconds minLogLikelihoodTimesPrior = 2.1293e+06 Resolution level 1 iteration 7 deformation iterations 18 Did one deformation step of max. 0.034784 voxels in 1.7728 seconds minLogLikelihoodTimesPrior = 2.1292e+06 Resolution level 1 iteration 7 deformation iterations 19 Did one deformation step of max. 0.040178 voxels in 1.7553 seconds minLogLikelihoodTimesPrior = 2.1290e+06 Resolution level 1 iteration 7 deformation iterations 20 Did one deformation step of max. 0.098216 voxels in 1.7976 seconds minLogLikelihoodTimesPrior = 2.1286e+06 Smoothing mesh collection with kernel size 0.750000 ...Smoothing class: 0 Smoothing class: 1 Smoothing class: 2 Smoothing class: 3 Smoothing class: 4 Smoothing class: 5 Smoothing class: 6 Smoothing class: 7 Smoothing class: 8 Smoothing class: 9 Smoothing class: 10 Smoothing class: 11 Smoothing class: 12 done numberOfImages = 1 Image: 0 Iteration 1 of 5 numberOfLabels: 13 Rasterizing mesh...here: 13 here2: 13 done minLogLikelihood = 2.1011e+06 minLogLikelihood = 2.1011e+06 minLogLikelihood = 2.1011e+06 EM converged! ans = 75.5346 98.9335 85.5284 33.4672 64.1977 96.8900 85.9593 79.0000 89.9276 61.6896 92.0698 72.0002 44.8743 ans = 1.0e+06 * 0.0012 0.0023 0.0027 1.3113 0.0004 0.0001 0.0004 0.0000 0.0044 0.0467 0.0007 0.0021 0.0612 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.029052 precisions[0][0][1] = 0.021023 precisions[0][0][2] = 0.019356 precisions[0][0][3] = 0.000873 precisions[0][0][4] = 0.049738 precisions[0][0][5] = 0.120732 precisions[0][0][6] = 0.053287 precisions[0][0][7] = 0.309033 precisions[0][0][8] = 0.015155 precisions[0][0][9] = 0.004625 precisions[0][0][10] = 0.037179 precisions[0][0][11] = 0.021959 precisions[0][0][12] = 0.004044 means[0][0] = 75.534569 means[0][1] = 98.933548 means[0][2] = 85.528374 means[0][3] = 33.467220 means[0][4] = 64.197739 means[0][5] = 96.889961 means[0][6] = 85.959320 means[0][7] = 78.999977 means[0][8] = 89.927612 means[0][9] = 61.689560 means[0][10] = 92.069801 means[0][11] = 72.000191 means[0][12] = 44.874279 Resolution level 2 iteration 1 deformation iterations 1 Did one deformation step of max. 0.5 voxels in 3.9718 seconds minLogLikelihoodTimesPrior = 2.1230e+06 Resolution level 2 iteration 1 deformation iterations 2 Did one deformation step of max. 0.05037 voxels in 1.7934 seconds minLogLikelihoodTimesPrior = 2.1230e+06 Resolution level 2 iteration 1 deformation iterations 3 Did one deformation step of max. 0.42229 voxels in 1.7826 seconds minLogLikelihoodTimesPrior = 2.1229e+06 Resolution level 2 iteration 1 deformation iterations 4 Did one deformation step of max. 0.07674 voxels in 1.7624 seconds minLogLikelihoodTimesPrior = 2.1229e+06 Resolution level 2 iteration 1 deformation iterations 5 Did one deformation step of max. 0.028755 voxels in 1.7584 seconds minLogLikelihoodTimesPrior = 2.1228e+06 Resolution level 2 iteration 1 deformation iterations 6 Did one deformation step of max. 0.13828 voxels in 1.7385 seconds minLogLikelihoodTimesPrior = 2.1226e+06 Resolution level 2 iteration 1 deformation iterations 7 Did one deformation step of max. 0.10622 voxels in 1.7225 seconds minLogLikelihoodTimesPrior = 2.1223e+06 Resolution level 2 iteration 1 deformation iterations 8 Did one deformation step of max. 0.11086 voxels in 2.2555 seconds minLogLikelihoodTimesPrior = 2.1220e+06 Resolution level 2 iteration 1 deformation iterations 9 Did one deformation step of max. 0.20528 voxels in 1.7625 seconds minLogLikelihoodTimesPrior = 2.1214e+06 Resolution level 2 iteration 1 deformation iterations 10 Did one deformation step of max. 0.32138 voxels in 1.7889 seconds minLogLikelihoodTimesPrior = 2.1204e+06 Resolution level 2 iteration 1 deformation iterations 11 Did one deformation step of max. 0.10281 voxels in 2.4376 seconds minLogLikelihoodTimesPrior = 2.1200e+06 Resolution level 2 iteration 1 deformation iterations 12 Did one deformation step of max. 0.2218 voxels in 1.7802 seconds minLogLikelihoodTimesPrior = 2.1194e+06 Resolution level 2 iteration 1 deformation iterations 13 Did one deformation step of max. 0.34786 voxels in 1.8642 seconds minLogLikelihoodTimesPrior = 2.1192e+06 Resolution level 2 iteration 1 deformation iterations 14 Did one deformation step of max. 0.12489 voxels in 1.8635 seconds minLogLikelihoodTimesPrior = 2.1190e+06 Resolution level 2 iteration 1 deformation iterations 15 Did one deformation step of max. 0.10444 voxels in 2.2775 seconds minLogLikelihoodTimesPrior = 2.1189e+06 Resolution level 2 iteration 1 deformation iterations 16 Did one deformation step of max. 0.033582 voxels in 2.5273 seconds minLogLikelihoodTimesPrior = 2.1188e+06 Resolution level 2 iteration 1 deformation iterations 17 Did one deformation step of max. 0.024373 voxels in 1.774 seconds minLogLikelihoodTimesPrior = 2.1187e+06 Resolution level 2 iteration 1 deformation iterations 18 Did one deformation step of max. 0.060558 voxels in 1.8421 seconds minLogLikelihoodTimesPrior = 2.1187e+06 Resolution level 2 iteration 1 deformation iterations 19 Did one deformation step of max. 0.033943 voxels in 1.8686 seconds minLogLikelihoodTimesPrior = 2.1187e+06 Resolution level 2 iteration 1 deformation iterations 20 Did one deformation step of max. 0.087066 voxels in 1.8064 seconds minLogLikelihoodTimesPrior = 2.1186e+06 Iteration 2 of 5 numberOfLabels: 13 Rasterizing mesh...here: 13 here2: 13 done minLogLikelihood = 2.0955e+06 minLogLikelihood = 2.0955e+06 EM converged! ans = 75.5463 98.9508 85.5366 33.4017 64.1939 96.8942 85.9602 79.0000 89.9321 61.6886 92.0595 72.0002 44.8794 ans = 1.0e+06 * 0.0012 0.0022 0.0026 1.2976 0.0004 0.0001 0.0003 0.0000 0.0041 0.0459 0.0007 0.0019 0.0607 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.029315 precisions[0][0][1] = 0.021197 precisions[0][0][2] = 0.019554 precisions[0][0][3] = 0.000878 precisions[0][0][4] = 0.051358 precisions[0][0][5] = 0.121736 precisions[0][0][6] = 0.053519 precisions[0][0][7] = 0.317988 precisions[0][0][8] = 0.015673 precisions[0][0][9] = 0.004667 precisions[0][0][10] = 0.037406 precisions[0][0][11] = 0.022974 precisions[0][0][12] = 0.004058 means[0][0] = 75.546257 means[0][1] = 98.950790 means[0][2] = 85.536621 means[0][3] = 33.401657 means[0][4] = 64.193871 means[0][5] = 96.894203 means[0][6] = 85.960182 means[0][7] = 78.999977 means[0][8] = 89.932068 means[0][9] = 61.688587 means[0][10] = 92.059448 means[0][11] = 72.000198 means[0][12] = 44.879375 Resolution level 2 iteration 2 deformation iterations 1 Did one deformation step of max. 0.5 voxels in 3.805 seconds minLogLikelihoodTimesPrior = 2.1186e+06 Resolution level 2 iteration 2 deformation iterations 2 Did one deformation step of max. 0.10356 voxels in 1.7733 seconds minLogLikelihoodTimesPrior = 2.1186e+06 Resolution level 2 iteration 2 deformation iterations 3 Did one deformation step of max. 0.58967 voxels in 1.8005 seconds minLogLikelihoodTimesPrior = 2.1185e+06 Resolution level 2 iteration 2 deformation iterations 4 Did one deformation step of max. 0.035292 voxels in 1.8032 seconds minLogLikelihoodTimesPrior = 2.1185e+06 Resolution level 2 iteration 2 deformation iterations 5 Did one deformation step of max. 0.016855 voxels in 1.776 seconds minLogLikelihoodTimesPrior = 2.1185e+06 Resolution level 2 iteration 2 deformation iterations 6 Did one deformation step of max. 0.098039 voxels in 1.7875 seconds minLogLikelihoodTimesPrior = 2.1184e+06 Resolution level 2 iteration 2 deformation iterations 7 Did one deformation step of max. 0.10778 voxels in 1.7902 seconds minLogLikelihoodTimesPrior = 2.1182e+06 Resolution level 2 iteration 2 deformation iterations 8 Did one deformation step of max. 0.093865 voxels in 1.8332 seconds minLogLikelihoodTimesPrior = 2.1178e+06 Resolution level 2 iteration 2 deformation iterations 9 Did one deformation step of max. 0.20556 voxels in 1.7772 seconds minLogLikelihoodTimesPrior = 2.1171e+06 Resolution level 2 iteration 2 deformation iterations 10 Did one deformation step of max. 0.28428 voxels in 2.0094 seconds minLogLikelihoodTimesPrior = 2.1164e+06 Resolution level 2 iteration 2 deformation iterations 11 Did one deformation step of max. 0.22641 voxels in 1.9003 seconds minLogLikelihoodTimesPrior = 2.1158e+06 Resolution level 2 iteration 2 deformation iterations 12 Did one deformation step of max. 0.12023 voxels in 2.5385 seconds minLogLikelihoodTimesPrior = 2.1156e+06 Resolution level 2 iteration 2 deformation iterations 13 Did one deformation step of max. 0.087387 voxels in 2.2712 seconds minLogLikelihoodTimesPrior = 2.1154e+06 Resolution level 2 iteration 2 deformation iterations 14 Did one deformation step of max. 0.090637 voxels in 1.7416 seconds minLogLikelihoodTimesPrior = 2.1152e+06 Resolution level 2 iteration 2 deformation iterations 15 Did one deformation step of max. 0.03731 voxels in 1.7314 seconds minLogLikelihoodTimesPrior = 2.1151e+06 Resolution level 2 iteration 2 deformation iterations 16 Did one deformation step of max. 0.1332 voxels in 1.7591 seconds minLogLikelihoodTimesPrior = 2.1151e+06 Resolution level 2 iteration 2 deformation iterations 17 Did one deformation step of max. 0.088264 voxels in 1.7734 seconds minLogLikelihoodTimesPrior = 2.1150e+06 Resolution level 2 iteration 2 deformation iterations 18 Did one deformation step of max. 0.059377 voxels in 1.7456 seconds minLogLikelihoodTimesPrior = 2.1150e+06 Resolution level 2 iteration 2 deformation iterations 19 Did one deformation step of max. 0.085593 voxels in 1.7408 seconds minLogLikelihoodTimesPrior = 2.1148e+06 Resolution level 2 iteration 2 deformation iterations 20 Did one deformation step of max. 0.10393 voxels in 1.7569 seconds minLogLikelihoodTimesPrior = 2.1146e+06 Iteration 3 of 5 numberOfLabels: 13 Rasterizing mesh...here: 13 here2: 13 done minLogLikelihood = 2.0922e+06 minLogLikelihood = 2.0922e+06 minLogLikelihood = 2.0922e+06 EM converged! ans = 75.5592 98.9784 85.5560 33.3714 64.1878 96.9008 85.9604 79.0000 89.9389 61.7834 92.0483 72.0002 44.9127 ans = 1.0e+06 * 0.0011 0.0022 0.0023 1.2958 0.0003 0.0001 0.0003 0.0000 0.0036 0.0452 0.0007 0.0019 0.0607 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.029601 precisions[0][0][1] = 0.021447 precisions[0][0][2] = 0.021014 precisions[0][0][3] = 0.000878 precisions[0][0][4] = 0.054832 precisions[0][0][5] = 0.122779 precisions[0][0][6] = 0.053634 precisions[0][0][7] = 0.335997 precisions[0][0][8] = 0.016652 precisions[0][0][9] = 0.004703 precisions[0][0][10] = 0.037776 precisions[0][0][11] = 0.022931 precisions[0][0][12] = 0.004058 means[0][0] = 75.559174 means[0][1] = 98.978424 means[0][2] = 85.555992 means[0][3] = 33.371353 means[0][4] = 64.187798 means[0][5] = 96.900772 means[0][6] = 85.960442 means[0][7] = 78.999977 means[0][8] = 89.938911 means[0][9] = 61.783405 means[0][10] = 92.048248 means[0][11] = 72.000214 means[0][12] = 44.912655 Resolution level 2 iteration 3 deformation iterations 1 Did one deformation step of max. 0.125 voxels in 4.2703 seconds minLogLikelihoodTimesPrior = 2.1144e+06 Resolution level 2 iteration 3 deformation iterations 2 Did one deformation step of max. 0.12391 voxels in 1.8346 seconds minLogLikelihoodTimesPrior = 2.1143e+06 Resolution level 2 iteration 3 deformation iterations 3 Did one deformation step of max. 0.19554 voxels in 1.8058 seconds minLogLikelihoodTimesPrior = 2.1140e+06 Resolution level 2 iteration 3 deformation iterations 4 Did one deformation step of max. 0.29249 voxels in 1.8211 seconds minLogLikelihoodTimesPrior = 2.1137e+06 Resolution level 2 iteration 3 deformation iterations 5 Did one deformation step of max. 0.40724 voxels in 1.7533 seconds minLogLikelihoodTimesPrior = 2.1135e+06 Resolution level 2 iteration 3 deformation iterations 6 Did one deformation step of max. 0.18652 voxels in 1.7729 seconds minLogLikelihoodTimesPrior = 2.1133e+06 Resolution level 2 iteration 3 deformation iterations 7 Did one deformation step of max. 0.051504 voxels in 9.0007 seconds minLogLikelihoodTimesPrior = 2.1133e+06 Resolution level 2 iteration 3 deformation iterations 8 Did one deformation step of max. 0.0083385 voxels in 1.7984 seconds minLogLikelihoodTimesPrior = 2.1132e+06 Resolution level 2 iteration 3 deformation iterations 9 Did one deformation step of max. 0.00048818 voxels in 1.8305 seconds minLogLikelihoodTimesPrior = 2.1132e+06 Resolution level 2 iteration 3 deformation iterations 10 Did one deformation step of max. 0.051397 voxels in 1.8034 seconds minLogLikelihoodTimesPrior = 2.1132e+06 Resolution level 2 iteration 3 deformation iterations 11 Did one deformation step of max. 0.0015234 voxels in 1.7729 seconds minLogLikelihoodTimesPrior = 2.1131e+06 Resolution level 2 iteration 3 deformation iterations 12 Did one deformation step of max. 0.0036264 voxels in 1.8763 seconds minLogLikelihoodTimesPrior = 2.1131e+06 Resolution level 2 iteration 3 deformation iterations 13 Did one deformation step of max. 0.19555 voxels in 1.8752 seconds minLogLikelihoodTimesPrior = 2.1130e+06 Resolution level 2 iteration 3 deformation iterations 14 Did one deformation step of max. 0.036047 voxels in 1.8563 seconds minLogLikelihoodTimesPrior = 2.1129e+06 Resolution level 2 iteration 3 deformation iterations 15 Did one deformation step of max. 0.084087 voxels in 1.8125 seconds minLogLikelihoodTimesPrior = 2.1129e+06 Resolution level 2 iteration 3 deformation iterations 16 Did one deformation step of max. 0.048154 voxels in 1.8305 seconds minLogLikelihoodTimesPrior = 2.1128e+06 Resolution level 2 iteration 3 deformation iterations 17 Did one deformation step of max. 0.085657 voxels in 1.8735 seconds minLogLikelihoodTimesPrior = 2.1128e+06 Resolution level 2 iteration 3 deformation iterations 18 Did one deformation step of max. 0.067843 voxels in 2.6142 seconds minLogLikelihoodTimesPrior = 2.1127e+06 Resolution level 2 iteration 3 deformation iterations 19 Did one deformation step of max. 0.089743 voxels in 1.8253 seconds minLogLikelihoodTimesPrior = 2.1127e+06 Resolution level 2 iteration 3 deformation iterations 20 Did one deformation step of max. 0.23297 voxels in 1.7584 seconds minLogLikelihoodTimesPrior = 2.1127e+06 Iteration 4 of 5 numberOfLabels: 13 Rasterizing mesh...here: 13 here2: 13 done minLogLikelihood = 2.0906e+06 minLogLikelihood = 2.0906e+06 EM converged! ans = 75.5628 98.9906 85.5667 33.3620 64.1855 96.9042 85.9609 79.0000 89.9420 61.8425 92.0440 72.0002 44.9285 ans = 1.0e+06 * 0.0011 0.0022 0.0021 1.2983 0.0003 0.0001 0.0003 0.0000 0.0034 0.0450 0.0007 0.0019 0.0608 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.029706 precisions[0][0][1] = 0.021553 precisions[0][0][2] = 0.022042 precisions[0][0][3] = 0.000878 precisions[0][0][4] = 0.056114 precisions[0][0][5] = 0.122970 precisions[0][0][6] = 0.053690 precisions[0][0][7] = 0.343964 precisions[0][0][8] = 0.017105 precisions[0][0][9] = 0.004716 precisions[0][0][10] = 0.037947 precisions[0][0][11] = 0.022679 precisions[0][0][12] = 0.004055 means[0][0] = 75.562790 means[0][1] = 98.990639 means[0][2] = 85.566711 means[0][3] = 33.361977 means[0][4] = 64.185455 means[0][5] = 96.904205 means[0][6] = 85.960884 means[0][7] = 78.999977 means[0][8] = 89.941971 means[0][9] = 61.842525 means[0][10] = 92.043953 means[0][11] = 72.000229 means[0][12] = 44.928474 Resolution level 2 iteration 4 deformation iterations 1 Did one deformation step of max. 0.25 voxels in 5.4467 seconds minLogLikelihoodTimesPrior = 2.1126e+06 Resolution level 2 iteration 4 deformation iterations 2 Did one deformation step of max. 0.076812 voxels in 1.7151 seconds minLogLikelihoodTimesPrior = 2.1126e+06 Resolution level 2 iteration 4 deformation iterations 3 Did one deformation step of max. 0.15818 voxels in 1.7321 seconds minLogLikelihoodTimesPrior = 2.1125e+06 Resolution level 2 iteration 4 deformation iterations 4 Did one deformation step of max. 0.06311 voxels in 2.4205 seconds minLogLikelihoodTimesPrior = 2.1124e+06 Resolution level 2 iteration 4 deformation iterations 5 Did one deformation step of max. 0.077025 voxels in 1.7557 seconds minLogLikelihoodTimesPrior = 2.1123e+06 Resolution level 2 iteration 4 deformation iterations 6 Did one deformation step of max. 0.12786 voxels in 1.7082 seconds minLogLikelihoodTimesPrior = 2.1120e+06 Resolution level 2 iteration 4 deformation iterations 7 Did one deformation step of max. 0.27047 voxels in 1.7006 seconds minLogLikelihoodTimesPrior = 2.1117e+06 Resolution level 2 iteration 4 deformation iterations 8 Did one deformation step of max. 0.086748 voxels in 3.8098 seconds minLogLikelihoodTimesPrior = 2.1116e+06 Resolution level 2 iteration 4 deformation iterations 9 Did one deformation step of max. 0.083528 voxels in 1.6986 seconds minLogLikelihoodTimesPrior = 2.1114e+06 Resolution level 2 iteration 4 deformation iterations 10 Did one deformation step of max. 0.072376 voxels in 2.3677 seconds minLogLikelihoodTimesPrior = 2.1114e+06 Resolution level 2 iteration 4 deformation iterations 11 Did one deformation step of max. 0.07874 voxels in 1.7099 seconds minLogLikelihoodTimesPrior = 2.1114e+06 Resolution level 2 iteration 4 deformation iterations 12 Did one deformation step of max. 0.1377 voxels in 1.7494 seconds minLogLikelihoodTimesPrior = 2.1113e+06 Resolution level 2 iteration 4 deformation iterations 13 Did one deformation step of max. 0.17001 voxels in 1.7146 seconds minLogLikelihoodTimesPrior = 2.1112e+06 Resolution level 2 iteration 4 deformation iterations 14 Did one deformation step of max. 0.045104 voxels in 3.0346 seconds minLogLikelihoodTimesPrior = 2.1112e+06 Resolution level 2 iteration 4 deformation iterations 15 Did one deformation step of max. 0.014651 voxels in 1.6977 seconds minLogLikelihoodTimesPrior = 2.1112e+06 Resolution level 2 iteration 4 deformation iterations 16 Did one deformation step of max. 0.059696 voxels in 1.7738 seconds minLogLikelihoodTimesPrior = 2.1112e+06 Resolution level 2 iteration 4 deformation iterations 17 Did one deformation step of max. 0.040555 voxels in 1.7374 seconds minLogLikelihoodTimesPrior = 2.1112e+06 Resolution level 2 iteration 4 deformation iterations 18 Did one deformation step of max. 0.055854 voxels in 1.6828 seconds minLogLikelihoodTimesPrior = 2.1112e+06 Resolution level 2 iteration 4 deformation iterations 19 Did one deformation step of max. 0.054014 voxels in 1.6929 seconds minLogLikelihoodTimesPrior = 2.1111e+06 Resolution level 2 iteration 4 deformation iterations 20 Did one deformation step of max. 0.055817 voxels in 1.7032 seconds minLogLikelihoodTimesPrior = 2.1111e+06 Iteration 5 of 5 numberOfLabels: 13 Rasterizing mesh...here: 13 here2: 13 done minLogLikelihood = 2.0894e+06 minLogLikelihood = 2.0894e+06 EM converged! ans = 75.5642 99.0022 85.5798 33.3577 64.1836 96.9074 85.9613 79.0000 89.9439 61.9093 92.0398 72.0002 44.9412 ans = 1.0e+06 * 0.0011 0.0021 0.0018 1.3020 0.0003 0.0001 0.0003 0.0000 0.0033 0.0448 0.0007 0.0020 0.0609 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.029800 precisions[0][0][1] = 0.021656 precisions[0][0][2] = 0.023337 precisions[0][0][3] = 0.000876 precisions[0][0][4] = 0.057169 precisions[0][0][5] = 0.123157 precisions[0][0][6] = 0.053822 precisions[0][0][7] = 0.350368 precisions[0][0][8] = 0.017502 precisions[0][0][9] = 0.004725 precisions[0][0][10] = 0.038084 precisions[0][0][11] = 0.022441 precisions[0][0][12] = 0.004052 means[0][0] = 75.564163 means[0][1] = 99.002243 means[0][2] = 85.579834 means[0][3] = 33.357727 means[0][4] = 64.183586 means[0][5] = 96.907379 means[0][6] = 85.961258 means[0][7] = 78.999977 means[0][8] = 89.943878 means[0][9] = 61.909321 means[0][10] = 92.039780 means[0][11] = 72.000237 means[0][12] = 44.941231 Resolution level 2 iteration 5 deformation iterations 1 Did one deformation step of max. 0.25 voxels in 3.7287 seconds minLogLikelihoodTimesPrior = 2.1110e+06 Resolution level 2 iteration 5 deformation iterations 2 Did one deformation step of max. 0.05452 voxels in 1.7381 seconds minLogLikelihoodTimesPrior = 2.1110e+06 Resolution level 2 iteration 5 deformation iterations 3 Did one deformation step of max. 0.020562 voxels in 1.7071 seconds minLogLikelihoodTimesPrior = 2.1110e+06 Resolution level 2 iteration 5 deformation iterations 4 Did one deformation step of max. 0.051105 voxels in 1.7042 seconds minLogLikelihoodTimesPrior = 2.1110e+06 Resolution level 2 iteration 5 deformation iterations 5 Did one deformation step of max. 0.029933 voxels in 1.7214 seconds minLogLikelihoodTimesPrior = 2.1110e+06 Resolution level 2 iteration 5 deformation iterations 6 Did one deformation step of max. 0.036471 voxels in 5.7054 seconds minLogLikelihoodTimesPrior = 2.1110e+06 Resolution level 2 iteration 5 deformation iterations 7 Did one deformation step of max. 0.00016757 voxels in 1.731 seconds minLogLikelihoodTimesPrior = 2.1110e+06 Resolution level 2 iteration 5 deformation iterations 8 Did one deformation step of max. 0.0040101 voxels in 5.1078 seconds minLogLikelihoodTimesPrior = 2.1110e+06 Resolution level 2 iteration 5 deformation iterations 9 Did one deformation step of max. 8.6323e-05 voxels in 1.7076 seconds minLogLikelihoodTimesPrior = 2.1110e+06 Resolution level 2 iteration 5 deformation iterations 10 Did one deformation step of max. 0.0092009 voxels in 1.7524 seconds minLogLikelihoodTimesPrior = 2.1110e+06 Resolution level 2 iteration 5 deformation iterations 11 Did one deformation step of max. 2.0004e-05 voxels in 8.763 seconds minLogLikelihoodTimesPrior = 2.1110e+06 Resolution level 2 iteration 5 deformation iterations 12 Did one deformation step of max. 0.00013946 voxels in 1.6987 seconds minLogLikelihoodTimesPrior = 2.1110e+06 Resolution level 2 iteration 5 deformation iterations 13 Did one deformation step of max. 3.0859e-05 voxels in 5.115 seconds minLogLikelihoodTimesPrior = 2.1110e+06 Resolution level 2 iteration 5 deformation iterations 14 Did one deformation step of max. 0.00013369 voxels in 1.7149 seconds minLogLikelihoodTimesPrior = 2.1110e+06 Resolution level 2 iteration 5 deformation iterations 15 Did one deformation step of max. 3.0068e-05 voxels in 5.1248 seconds minLogLikelihoodTimesPrior = 2.1110e+06 Resolution level 2 iteration 5 deformation iterations 16 Did one deformation step of max. 6.7032e-05 voxels in 3.3891 seconds minLogLikelihoodTimesPrior = 2.1110e+06 Resolution level 2 iteration 5 deformation iterations 17 Did one deformation step of max. 3.0237e-05 voxels in 3.4115 seconds minLogLikelihoodTimesPrior = 2.1110e+06 Resolution level 2 iteration 5 deformation iterations 18 Did one deformation step of max. 1.7716e-05 voxels in 6.9805 seconds minLogLikelihoodTimesPrior = 2.1110e+06 Resolution level 2 iteration 5 deformation iterations 19 Did one deformation step of max. 0 voxels in 3.3979 seconds minLogLikelihoodTimesPrior = 2.1110e+06 maximalDeformation is too small; stopping Smoothing mesh collection with kernel size 0.000000 ...done numberOfImages = 1 Image: 0 Iteration 1 of 3 numberOfLabels: 13 Rasterizing mesh...here: 13 here2: 13 done minLogLikelihood = 2.0871e+06 minLogLikelihood = 2.0871e+06 EM converged! ans = 75.5668 98.9980 85.5607 33.4617 64.1852 96.9081 85.9615 79.0000 89.9452 62.0388 92.0418 72.0001 44.9851 ans = 1.0e+06 * 0.0011 0.0021 0.0019 1.3230 0.0003 0.0001 0.0004 0.0000 0.0032 0.0452 0.0007 0.0013 0.0619 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.029667 precisions[0][0][1] = 0.021580 precisions[0][0][2] = 0.022742 precisions[0][0][3] = 0.000869 precisions[0][0][4] = 0.056957 precisions[0][0][5] = 0.123128 precisions[0][0][6] = 0.052325 precisions[0][0][7] = 0.353175 precisions[0][0][8] = 0.017552 precisions[0][0][9] = 0.004703 precisions[0][0][10] = 0.037971 precisions[0][0][11] = 0.027254 precisions[0][0][12] = 0.004018 means[0][0] = 75.566841 means[0][1] = 98.997978 means[0][2] = 85.560722 means[0][3] = 33.461704 means[0][4] = 64.185234 means[0][5] = 96.908096 means[0][6] = 85.961456 means[0][7] = 78.999977 means[0][8] = 89.945168 means[0][9] = 62.038830 means[0][10] = 92.041786 means[0][11] = 72.000137 means[0][12] = 44.985104 Resolution level 3 iteration 1 deformation iterations 1 Did one deformation step of max. 0.25 voxels in 4.399 seconds minLogLikelihoodTimesPrior = 2.1086e+06 Resolution level 3 iteration 1 deformation iterations 2 Did one deformation step of max. 0.11224 voxels in 1.7166 seconds minLogLikelihoodTimesPrior = 2.1086e+06 Resolution level 3 iteration 1 deformation iterations 3 Did one deformation step of max. 0.051804 voxels in 1.6772 seconds minLogLikelihoodTimesPrior = 2.1085e+06 Resolution level 3 iteration 1 deformation iterations 4 Did one deformation step of max. 0.022701 voxels in 1.7199 seconds minLogLikelihoodTimesPrior = 2.1084e+06 Resolution level 3 iteration 1 deformation iterations 5 Did one deformation step of max. 0.10382 voxels in 3.416 seconds minLogLikelihoodTimesPrior = 2.1084e+06 Resolution level 3 iteration 1 deformation iterations 6 Did one deformation step of max. 0.052744 voxels in 1.7481 seconds minLogLikelihoodTimesPrior = 2.1084e+06 Resolution level 3 iteration 1 deformation iterations 7 Did one deformation step of max. 0.12682 voxels in 1.7408 seconds minLogLikelihoodTimesPrior = 2.1084e+06 Resolution level 3 iteration 1 deformation iterations 8 Did one deformation step of max. 0.095892 voxels in 1.7569 seconds minLogLikelihoodTimesPrior = 2.1083e+06 Resolution level 3 iteration 1 deformation iterations 9 Did one deformation step of max. 0.12221 voxels in 1.7286 seconds minLogLikelihoodTimesPrior = 2.1082e+06 Resolution level 3 iteration 1 deformation iterations 10 Did one deformation step of max. 0.19866 voxels in 1.7212 seconds minLogLikelihoodTimesPrior = 2.1081e+06 Resolution level 3 iteration 1 deformation iterations 11 Did one deformation step of max. 0.19646 voxels in 1.7173 seconds minLogLikelihoodTimesPrior = 2.1079e+06 Resolution level 3 iteration 1 deformation iterations 12 Did one deformation step of max. 0.28759 voxels in 1.692 seconds minLogLikelihoodTimesPrior = 2.1076e+06 Resolution level 3 iteration 1 deformation iterations 13 Did one deformation step of max. 0.10202 voxels in 2.6675 seconds minLogLikelihoodTimesPrior = 2.1075e+06 Resolution level 3 iteration 1 deformation iterations 14 Did one deformation step of max. 0.26039 voxels in 1.7357 seconds minLogLikelihoodTimesPrior = 2.1074e+06 Resolution level 3 iteration 1 deformation iterations 15 Did one deformation step of max. 0.15713 voxels in 2.2157 seconds minLogLikelihoodTimesPrior = 2.1073e+06 Resolution level 3 iteration 1 deformation iterations 16 Did one deformation step of max. 0.18296 voxels in 2.0626 seconds minLogLikelihoodTimesPrior = 2.1072e+06 Resolution level 3 iteration 1 deformation iterations 17 Did one deformation step of max. 0.0077513 voxels in 7.3902 seconds minLogLikelihoodTimesPrior = 2.1072e+06 Resolution level 3 iteration 1 deformation iterations 18 Did one deformation step of max. 0.001907 voxels in 1.9349 seconds minLogLikelihoodTimesPrior = 2.1072e+06 Resolution level 3 iteration 1 deformation iterations 19 Did one deformation step of max. 0.0046498 voxels in 5.6685 seconds minLogLikelihoodTimesPrior = 2.1072e+06 Resolution level 3 iteration 1 deformation iterations 20 Did one deformation step of max. 0.00031267 voxels in 1.9774 seconds minLogLikelihoodTimesPrior = 2.1072e+06 Iteration 2 of 3 numberOfLabels: 13 Rasterizing mesh...here: 13 here2: 13 done minLogLikelihood = 2.0848e+06 minLogLikelihood = 2.0848e+06 EM converged! ans = 75.5678 99.0050 85.5654 33.4423 64.1840 96.9107 85.9614 79.0000 89.9458 62.1022 92.0361 72.0001 44.9927 ans = 1.0e+06 * 0.0011 0.0021 0.0019 1.3214 0.0003 0.0001 0.0004 0.0000 0.0031 0.0450 0.0007 0.0011 0.0619 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.029783 precisions[0][0][1] = 0.021652 precisions[0][0][2] = 0.023064 precisions[0][0][3] = 0.000870 precisions[0][0][4] = 0.057430 precisions[0][0][5] = 0.123273 precisions[0][0][6] = 0.052204 precisions[0][0][7] = 0.355550 precisions[0][0][8] = 0.017830 precisions[0][0][9] = 0.004714 precisions[0][0][10] = 0.038052 precisions[0][0][11] = 0.030028 precisions[0][0][12] = 0.004020 means[0][0] = 75.567802 means[0][1] = 99.004990 means[0][2] = 85.565376 means[0][3] = 33.442303 means[0][4] = 64.184021 means[0][5] = 96.910683 means[0][6] = 85.961418 means[0][7] = 78.999977 means[0][8] = 89.945793 means[0][9] = 62.102161 means[0][10] = 92.036125 means[0][11] = 72.000122 means[0][12] = 44.992722 Resolution level 3 iteration 2 deformation iterations 1 Did one deformation step of max. 0.25 voxels in 4.3506 seconds minLogLikelihoodTimesPrior = 2.1071e+06 Resolution level 3 iteration 2 deformation iterations 2 Did one deformation step of max. 0.22361 voxels in 1.8997 seconds minLogLikelihoodTimesPrior = 2.1071e+06 Resolution level 3 iteration 2 deformation iterations 3 Did one deformation step of max. 0.052971 voxels in 1.8337 seconds minLogLikelihoodTimesPrior = 2.1071e+06 Resolution level 3 iteration 2 deformation iterations 4 Did one deformation step of max. 0.19989 voxels in 2.0789 seconds minLogLikelihoodTimesPrior = 2.1071e+06 Resolution level 3 iteration 2 deformation iterations 5 Did one deformation step of max. 0.073835 voxels in 2.3689 seconds minLogLikelihoodTimesPrior = 2.1071e+06 Resolution level 3 iteration 2 deformation iterations 6 Did one deformation step of max. 0.015832 voxels in 1.9953 seconds minLogLikelihoodTimesPrior = 2.1070e+06 Resolution level 3 iteration 2 deformation iterations 7 Did one deformation step of max. 0.032684 voxels in 1.9864 seconds minLogLikelihoodTimesPrior = 2.1070e+06 Resolution level 3 iteration 2 deformation iterations 8 Did one deformation step of max. 0.048056 voxels in 1.9544 seconds minLogLikelihoodTimesPrior = 2.1070e+06 Resolution level 3 iteration 2 deformation iterations 9 Did one deformation step of max. 0.085051 voxels in 1.9053 seconds minLogLikelihoodTimesPrior = 2.1070e+06 Resolution level 3 iteration 2 deformation iterations 10 Did one deformation step of max. 0.055137 voxels in 1.9935 seconds minLogLikelihoodTimesPrior = 2.1070e+06 Resolution level 3 iteration 2 deformation iterations 11 Did one deformation step of max. 0.045398 voxels in 1.9196 seconds minLogLikelihoodTimesPrior = 2.1069e+06 Resolution level 3 iteration 2 deformation iterations 12 Did one deformation step of max. 0.084868 voxels in 1.8974 seconds minLogLikelihoodTimesPrior = 2.1068e+06 Resolution level 3 iteration 2 deformation iterations 13 Did one deformation step of max. 0.16958 voxels in 1.9442 seconds minLogLikelihoodTimesPrior = 2.1066e+06 Resolution level 3 iteration 2 deformation iterations 14 Did one deformation step of max. 0.14608 voxels in 3.8998 seconds minLogLikelihoodTimesPrior = 2.1064e+06 Resolution level 3 iteration 2 deformation iterations 15 Did one deformation step of max. 0.20708 voxels in 2.2528 seconds minLogLikelihoodTimesPrior = 2.1064e+06 Resolution level 3 iteration 2 deformation iterations 16 Did one deformation step of max. 0.027084 voxels in 1.9355 seconds minLogLikelihoodTimesPrior = 2.1064e+06 Resolution level 3 iteration 2 deformation iterations 17 Did one deformation step of max. 0.053345 voxels in 2.0069 seconds minLogLikelihoodTimesPrior = 2.1064e+06 Resolution level 3 iteration 2 deformation iterations 18 Did one deformation step of max. 0.073106 voxels in 1.9025 seconds minLogLikelihoodTimesPrior = 2.1063e+06 Resolution level 3 iteration 2 deformation iterations 19 Did one deformation step of max. 0.072129 voxels in 1.9081 seconds minLogLikelihoodTimesPrior = 2.1063e+06 Resolution level 3 iteration 2 deformation iterations 20 Did one deformation step of max. 0.072945 voxels in 1.9654 seconds minLogLikelihoodTimesPrior = 2.1063e+06 Iteration 3 of 3 numberOfLabels: 13 Rasterizing mesh...here: 13 here2: 13 done minLogLikelihood = 2.0841e+06 minLogLikelihood = 2.0841e+06 EM converged! ans = 75.5666 99.0105 85.5706 33.4380 64.1831 96.9124 85.9616 79.0000 89.9462 62.1577 92.0329 72.0001 44.9991 ans = 1.0e+06 * 0.0011 0.0021 0.0018 1.3214 0.0003 0.0001 0.0004 0.0000 0.0031 0.0449 0.0007 0.0010 0.0619 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.029850 precisions[0][0][1] = 0.021704 precisions[0][0][2] = 0.023663 precisions[0][0][3] = 0.000870 precisions[0][0][4] = 0.057882 precisions[0][0][5] = 0.123351 precisions[0][0][6] = 0.052045 precisions[0][0][7] = 0.357349 precisions[0][0][8] = 0.018077 precisions[0][0][9] = 0.004720 precisions[0][0][10] = 0.038112 precisions[0][0][11] = 0.031705 precisions[0][0][12] = 0.004019 means[0][0] = 75.566628 means[0][1] = 99.010490 means[0][2] = 85.570602 means[0][3] = 33.437988 means[0][4] = 64.183113 means[0][5] = 96.912445 means[0][6] = 85.961548 means[0][7] = 78.999977 means[0][8] = 89.946243 means[0][9] = 62.157742 means[0][10] = 92.032867 means[0][11] = 72.000114 means[0][12] = 44.999126 Resolution level 3 iteration 3 deformation iterations 1 Did one deformation step of max. 0.125 voxels in 5.1923 seconds minLogLikelihoodTimesPrior = 2.1063e+06 Resolution level 3 iteration 3 deformation iterations 2 Did one deformation step of max. 0.026059 voxels in 2.0043 seconds minLogLikelihoodTimesPrior = 2.1063e+06 Resolution level 3 iteration 3 deformation iterations 3 Did one deformation step of max. 0.027885 voxels in 5.978 seconds minLogLikelihoodTimesPrior = 2.1063e+06 Resolution level 3 iteration 3 deformation iterations 4 Did one deformation step of max. 0.0094598 voxels in 1.9472 seconds minLogLikelihoodTimesPrior = 2.1063e+06 Resolution level 3 iteration 3 deformation iterations 5 Did one deformation step of max. 0.015713 voxels in 8.1193 seconds minLogLikelihoodTimesPrior = 2.1063e+06 Resolution level 3 iteration 3 deformation iterations 6 Did one deformation step of max. 0.00097746 voxels in 2.0955 seconds minLogLikelihoodTimesPrior = 2.1063e+06 Resolution level 3 iteration 3 deformation iterations 7 Did one deformation step of max. 0.0049508 voxels in 8.5467 seconds minLogLikelihoodTimesPrior = 2.1063e+06 Resolution level 3 iteration 3 deformation iterations 8 Did one deformation step of max. 0.00018284 voxels in 2.059 seconds minLogLikelihoodTimesPrior = 2.1063e+06 Resolution level 3 iteration 3 deformation iterations 9 Did one deformation step of max. 0.00030188 voxels in 2.2595 seconds minLogLikelihoodTimesPrior = 2.1063e+06 Resolution level 3 iteration 3 deformation iterations 10 Did one deformation step of max. 0.00074974 voxels in 2.0915 seconds minLogLikelihoodTimesPrior = 2.1063e+06 Resolution level 3 iteration 3 deformation iterations 11 Did one deformation step of max. 0.0032006 voxels in 8.4368 seconds minLogLikelihoodTimesPrior = 2.1063e+06 Resolution level 3 iteration 3 deformation iterations 12 Did one deformation step of max. 0.00011952 voxels in 2.1465 seconds minLogLikelihoodTimesPrior = 2.1063e+06 Resolution level 3 iteration 3 deformation iterations 13 Did one deformation step of max. 0.00018621 voxels in 1.9555 seconds minLogLikelihoodTimesPrior = 2.1063e+06 Resolution level 3 iteration 3 deformation iterations 14 Did one deformation step of max. 0.00042159 voxels in 1.9817 seconds minLogLikelihoodTimesPrior = 2.1062e+06 Resolution level 3 iteration 3 deformation iterations 15 Did one deformation step of max. 0.0016239 voxels in 2.0838 seconds minLogLikelihoodTimesPrior = 2.1062e+06 Resolution level 3 iteration 3 deformation iterations 16 Did one deformation step of max. 0.0013319 voxels in 1.9327 seconds minLogLikelihoodTimesPrior = 2.1062e+06 Resolution level 3 iteration 3 deformation iterations 17 Did one deformation step of max. 0.0069253 voxels in 2.0062 seconds minLogLikelihoodTimesPrior = 2.1062e+06 Resolution level 3 iteration 3 deformation iterations 18 Did one deformation step of max. 0.0035981 voxels in 2.2259 seconds minLogLikelihoodTimesPrior = 2.1062e+06 Resolution level 3 iteration 3 deformation iterations 19 Did one deformation step of max. 0.017221 voxels in 1.9793 seconds minLogLikelihoodTimesPrior = 2.1062e+06 Resolution level 3 iteration 3 deformation iterations 20 Did one deformation step of max. 0.008727 voxels in 2.1965 seconds minLogLikelihoodTimesPrior = 2.1062e+06 Fitting mesh to image data mask took 902.3788 seconds numberOfLabels: 25 Rasterizing mesh...here: 25 here2: 25 done Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Careful here: the applied transformation will turn positive tetrahedra into negative ones. -1.11338 0.200253 -0.107012 -0.253777 0.658266 1.05669 0.0187774 -0.993166 0.48111 determinant: -1.51829 Starting to swap the point assignments of each tetrahedron... I am WriteImage and I'm running! Wrote image to file image.mgz Constructing image-to-world transform from header information (asmr1.mgz) Returning the following transform: AffineTransform (0x7fd1c226fa10) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 434093710 Debug: Off Object Name: Observers: none Matrix: -0.33333 0 0 0 0 0.33333 0 -0.33333 0 Offset: [10.5661, -36.1663, 19.1664] Center: [0, 0, 0] Translation: [10.5661, -36.1663, 19.1664] Inverse: -3.00003 0 0 0 0 -3.00003 0 3.00003 0 Singular: 0 Constructing image-to-world transform from header information (/home/gustav/Desktop/preprocessing_h70/bert/tmp/hippoSF_T1_v10_left/imageDump.mgz) Returning the following transform: AffineTransform (0x7fd1c226fa10) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 434101017 Debug: Off Object Name: Observers: none Matrix: 0.299933 0.00218145 0.0619217 -0.0526206 0.241939 0.149746 0.0311612 -0.117159 0.264254 Offset: [-39.4537, -31.3643, -8.96367] Center: [0, 0, 0] Translation: [-39.4537, -31.3643, -8.96367] Inverse: 3.34017 -0.321038 -0.600766 0.761339 3.1701 -1.97482 -0.0563329 1.44335 2.97953 Singular: 0 Transform before cropping: AffineTransform (0x7fd1c226fa10) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 434101019 Debug: Off Object Name: Observers: none Matrix: -0.899807 -0.00654441 -0.185767 -0.0934846 0.35148 -0.792771 -0.157863 0.725824 0.449243 Offset: [150.061, 84.391, 14.4063] Center: [0, 0, 0] Translation: [150.061, 84.391, 14.4063] Inverse: -1.11338 0.200253 -0.107012 -0.253777 0.658266 1.05669 0.0187774 -0.993166 0.48111 Singular: 0 WorldToImageTransform before cropping: AffineTransform (0x7fd1bb3d05e0) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 434101021 Debug: Off Object Name: Observers: none Matrix: -3.00003 0 0 0 0 -3.00003 0 3.00003 0 Offset: [31.6986, 57.4997, 108.5] Center: [0, 0, 0] Translation: [31.6986, 57.4997, 108.5] Inverse: -0.33333 0 0 0 0 0.33333 0 -0.33333 0 Singular: 0 m_BoundingBoxSize: [131, 241,99] minimalMappedCoordinate: [13.3102, -5.45355,-6.11593] maximalMappedCoordinate: [150.061, 168.746,232.63] Cropping with min [0 -22 -29] and max [164 186 256] m_OriginalImageRegion before checking margins: ImageRegion (0x7fd1bb3d1d38) Dimension: 3 Index: [0, -22, -29] Size: [165, 209, 286] m_CroppedImageRegion before checking margins: ImageRegion (0x7fd1bb3d1d00) Dimension: 3 Index: [0, 0, 0] Size: [165, 209, 286] m_OriginalImageRegion after checking margins: ImageRegion (0x7fd1bb3d1d38) Dimension: 3 Index: [0, 0, 0] Size: [165, 178, 220] m_CroppedImageRegion after checking margins: ImageRegion (0x7fd1bb3d1d00) Dimension: 3 Index: [0, 22, 29] Size: [165, 178, 220] Transform after cropping: AffineTransform (0x7fd1c226fa10) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 434108328 Debug: Off Object Name: Observers: none Matrix: -0.899807 -0.00654441 -0.185767 -0.0934846 0.35148 -0.792771 -0.157863 0.725824 0.449243 Offset: [150.061, 106.391, 43.4063] Center: [0, 0, 0] Translation: [150.061, 106.391, 43.4063] Inverse: -1.11338 0.200253 -0.107012 -0.253777 0.658266 1.05669 0.0187774 -0.993166 0.48111 Singular: 0 WorldToImageTransform after cropping: AffineTransform (0x7fd1bb3d05e0) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 434108329 Debug: Off Object Name: Observers: none Matrix: -3.00003 0 0 0 0 -3.00003 0 3.00003 0 Offset: [31.6986, 79.4997, 137.5] Center: [0, 0, 0] Translation: [31.6986, 79.4997, 137.5] Inverse: -0.33333 0 0 0 0 0.33333 0 -0.33333 0 Singular: 0 I am WriteImage and I'm running! Wrote image to file asmr2.mgz This file does not contain MRI parameters This file does not contain MRI parameters numberOfLabels: 25 Rasterizing mesh...here: 25 here2: 25 done mri_convert.bin discreteLabels.mgz discreteLabelsResampledT1.mgz -rt nearest -odt float -rl /home/gustav/Desktop/preprocessing_h70/bert/mri/norm.mgz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from discreteLabels.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) reading template info from volume /home/gustav/Desktop/preprocessing_h70/bert/mri/norm.mgz... Reslicing using nearest writing to discreteLabelsResampledT1.mgz... mv: cannot stat 'volumesAmygdala.txt': No such file or directory Everything done! It took 1408.4874 seconds #-------------------------------------------- #@# Hippocampal Subfields processing (T1 only) right fre 10 feb 2017 09:39:10 CET ------------------------------------------ Setting up environment variables --- LD_LIBRARY_PATH is .:/usr/local/freesurfer-6.0.0/MCRv80/runtime/glnxa64:/usr/local/freesurfer-6.0.0/MCRv80/bin/glnxa64:/usr/local/freesurfer-6.0.0/MCRv80/sys/os/glnxa64:/usr/local/freesurfer-6.0.0/MCRv80/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/usr/local/freesurfer-6.0.0/MCRv80/sys/java/jre/glnxa64/jre/lib/amd64/server:/usr/local/freesurfer-6.0.0/MCRv80/sys/java/jre/glnxa64/jre/lib/amd64/client:/usr/local/freesurfer-6.0.0/MCRv80/sys/java/jre/glnxa64/jre/lib/amd64: Warning: application is running on a locale different from the original platform locale. Warning: No display specified. You will not be able to display graphics on the screen. Registering imageDump.mgz to hippocampal mask from ASEG This file does not contain MRI parameters $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $ --mov: Using imageDump.mgz as movable/source volume. --dst: Using /home/gustav/Desktop/preprocessing_h70/bert/tmp/hippoSF_T1_v10_right//hippoAmygBinaryMask_autoCropped.mgz as target volume. --lta: Output transform as trash.lta . --mapmovhdr: Will save header adjusted movable as imageDump_coregistered.mgz ! --sat: Using saturation 50 in M-estimator! reading source 'imageDump.mgz'... reading target '/home/gustav/Desktop/preprocessing_h70/bert/tmp/hippoSF_T1_v10_right//hippoAmygBinaryMask_autoCropped.mgz'... Registration::setSourceAndTarget(MRI s, MRI t, keeptype = TRUE ) Type Source : 4 Type Target : 3 ensure both FLOAT (3) Reordering axes in mov to better fit dst... ( 1 3 -2 ) MRIreorder() ----------- xdim=1 ydim=3 zdim=-2 src 131 241 99, 0.250000 0.250000 0.250000 dst 131 99 241, 0.250000 0.250000 0.250000 Determinant after swap : 0.015625 Mov: (0.25, 0.25, 0.25)mm and dim (131, 99, 241) Dst: (1, 1, 1)mm and dim (40, 40, 60) Asserting both images: 1mm isotropic - reslicing Mov ... -- changing data type from 4 to 3 (noscale = 0)... -- Original : (0.25, 0.25, 0.25)mm and (131, 99, 241) voxels. -- Resampled: (1, 1, 1)mm and (40, 40, 61) voxels. -- Reslicing using cubic bspline MRItoBSpline degree 3 - reslicing Dst ... -- Original : (1, 1, 1)mm and (40, 40, 60) voxels. -- Resampled: (1, 1, 1)mm and (40, 40, 61) voxels. -- Reslicing using cubic bspline MRItoBSpline degree 3 Registration::computeMultiresRegistration - computing centroids - computing initial transform -- using translation info - Get Gaussian Pyramid Limits ( min size: 16 max size: -1 ) - Build Gaussian Pyramid ( Limits min steps: 0 max steps: 1 ) - Build Gaussian Pyramid ( Limits min steps: 0 max steps: 1 ) - initial transform: Ti = [ ... 1.0000000000000 0 0 -1.1277112712666 0 1.0000000000000 0 1.5293590006806 0 0 1.0000000000000 -3.7162973090522 0 0 0 1.0000000000000 ] - initial iscale: Ii =1 Resolution: 1 S( 20 20 30 ) T( 20 20 30 ) Iteration(f): 1 -- diff. to prev. transform: 8.96239 Iteration(f): 2 -- diff. to prev. transform: 5.98938 Iteration(f): 3 -- diff. to prev. transform: 6.71848 Iteration(f): 4 -- diff. to prev. transform: 4.91905 Iteration(f): 5 -- diff. to prev. transform: 0.338069 max it: 5 reached! Resolution: 0 S( 40 40 61 ) T( 40 40 61 ) Iteration(f): 1 -- diff. to prev. transform: 8.28545 Iteration(f): 2 -- diff. to prev. transform: 1.38582 Iteration(f): 3 -- diff. to prev. transform: 0.464658 Iteration(f): 4 -- diff. to prev. transform: 0.171461 Iteration(f): 5 -- diff. to prev. transform: 0.0696278 max it: 5 reached! - final transform: Tf = [ ... 0.9930683633876 0.0758658673714 0.0897752516381 -5.7456775954005 -0.1040278073782 0.9228418934323 0.3708652787987 -8.2286550180772 -0.0547123471511 -0.3776336980386 0.9243372486138 8.9765166228369 0 0 0 1.0000000000000 ] - final iscale: If = 1 ********************************************************** * * WARNING: Registration did not converge in 5 steps! * Problem might be ill posed. * Please inspect output manually! * ********************************************************** Final Transform: Adjusting final transform due to initial resampling (voxel or size changes) ... M = [ ... 0.2482670908469 0.0224438129095 -0.0189664668428 0.3250519305490 -0.0260069518445 0.0927163196997 -0.2307104733581 21.1796144862381 -0.0136780867878 0.2310843121534 0.0944084245097 -3.5066717168466 0 0 0 1.0000000000000 ] Determinant : 0.015625 writing output transformation to trash.lta ... converting VOX to RAS and saving RAS2RAS... mapmovhdr: Changing vox2ras MOV header (to map to DST) ... To check aligned result, run: freeview -v /home/gustav/Desktop/preprocessing_h70/bert/tmp/hippoSF_T1_v10_right//hippoAmygBinaryMask_autoCropped.mgz imageDump_coregistered.mgz Registration took 0 minutes and 1 seconds. Thank you for using RobustRegister! If you find it useful and use it for a publication, please cite: Highly Accurate Inverse Consistent Registration: A Robust Approach M. Reuter, H.D. Rosas, B. Fischl. NeuroImage 53(4):1181-1196, 2010. http://dx.doi.org/10.1016/j.neuroimage.2010.07.020 http://reuter.mit.edu/papers/reuter-robreg10.pdf $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $ --mov: Using imageDump.mgz as movable/source volume. --dst: Using /home/gustav/Desktop/preprocessing_h70/bert/tmp/hippoSF_T1_v10_right//hippoAmygBinaryMask_autoCropped.mgz as target volume. --lta: Output transform as trash.lta . --mapmovhdr: Will save header adjusted movable as imageDump_coregistered.mgz ! --affine: Enableing affine transform! --sat: Using saturation 50 in M-estimator! reading source 'imageDump.mgz'... reading target '/home/gustav/Desktop/preprocessing_h70/bert/tmp/hippoSF_T1_v10_right//hippoAmygBinaryMask_autoCropped.mgz'... Registration::setSourceAndTarget(MRI s, MRI t, keeptype = TRUE ) Type Source : 4 Type Target : 3 ensure both FLOAT (3) Reordering axes in mov to better fit dst... ( 1 3 -2 ) MRIreorder() ----------- xdim=1 ydim=3 zdim=-2 src 131 241 99, 0.250000 0.250000 0.250000 dst 131 99 241, 0.250000 0.250000 0.250000 Determinant after swap : 0.015625 Mov: (0.25, 0.25, 0.25)mm and dim (131, 99, 241) Dst: (1, 1, 1)mm and dim (40, 40, 60) Asserting both images: 1mm isotropic - reslicing Mov ... -- changing data type from 4 to 3 (noscale = 0)... -- Original : (0.25, 0.25, 0.25)mm and (131, 99, 241) voxels. -- Resampled: (1, 1, 1)mm and (40, 40, 61) voxels. -- Reslicing using cubic bspline MRItoBSpline degree 3 - reslicing Dst ... -- Original : (1, 1, 1)mm and (40, 40, 60) voxels. -- Resampled: (1, 1, 1)mm and (40, 40, 61) voxels. -- Reslicing using cubic bspline MRItoBSpline degree 3 Registration::computeMultiresRegistration - computing centroids - computing initial transform -- using translation info - Get Gaussian Pyramid Limits ( min size: 16 max size: -1 ) - Build Gaussian Pyramid ( Limits min steps: 0 max steps: 1 ) - Build Gaussian Pyramid ( Limits min steps: 0 max steps: 1 ) - initial transform: Ti = [ ... 1.0000000000000 0 0 -1.1277130771661 0 1.0000000000000 0 1.5293615920182 0 0 1.0000000000000 -3.7162931397634 0 0 0 1.0000000000000 ] - initial iscale: Ii =1 Resolution: 1 S( 20 20 30 ) T( 20 20 30 ) Iteration(f): 1 -- diff. to prev. transform: 9.24375 Iteration(f): 2 -- diff. to prev. transform: 8.13621 Iteration(f): 3 -- diff. to prev. transform: 9.23773 Iteration(f): 4 -- diff. to prev. transform: 8.86858 Iteration(f): 5 -- diff. to prev. transform: 3.28276 max it: 5 reached! Resolution: 0 S( 40 40 61 ) T( 40 40 61 ) Iteration(f): 1 -- diff. to prev. transform: 20.124 Iteration(f): 2 -- diff. to prev. transform: 4.61671 Iteration(f): 3 -- diff. to prev. transform: 1.14265 Iteration(f): 4 -- diff. to prev. transform: 0.40233 Iteration(f): 5 -- diff. to prev. transform: 0.115901 max it: 5 reached! - final transform: Tf = [ ... 1.2368833693504 -0.3350334943684 -0.0370103966152 2.7250217984320 -0.1013328632714 0.9537948151996 0.4382722001413 -11.8296146036238 -0.1349054955588 -0.8583814362990 0.9198744860385 19.6227573785034 0 0 0 1.0000000000000 ] - final iscale: If = 1 ********************************************************** * * WARNING: Registration did not converge in 5 steps! * Problem might be ill posed. * Please inspect output manually! * ********************************************************** Final Transform: Adjusting final transform due to initial resampling (voxel or size changes) ... M = [ ... 0.3092207672966 -0.0092525969478 0.0837583495663 -3.5680999546639 -0.0253332054084 0.1095680239123 -0.2384486531026 18.6080609370354 -0.0337263673330 0.2299685666808 0.2145952947066 -8.5968214261031 0 0 0 1.0000000000000 ] Determinant : 0.0239238 Decompose into Rot * Shear * Scale : Rot = [ ... 0.9906832749494 0.0490260582934 0.1270554774254 0.0755122968034 0.5786542025314 -0.8120697057052 -0.1133337626970 0.8140981264571 0.5695609701621 ] Shear = [ ... 1.0000000000000 -0.1077521805509 0.1245047526661 -0.0874482788358 1.0000000000000 0.1250479482004 0.1318780294011 0.1632066651730 1.0000000000000 ] Scale = diag([ 0.3082492100139 0.2501653584215 0.3265039888886 ]) writing output transformation to trash.lta ... converting VOX to RAS and saving RAS2RAS... mapmovhdr: Changing vox2ras MOV header (to map to DST) ... To check aligned result, run: freeview -v /home/gustav/Desktop/preprocessing_h70/bert/tmp/hippoSF_T1_v10_right//hippoAmygBinaryMask_autoCropped.mgz imageDump_coregistered.mgz Registration took 0 minutes and 1 seconds. Thank you for using RobustRegister! If you find it useful and use it for a publication, please cite: Highly Accurate Inverse Consistent Registration: A Robust Approach M. Reuter, H.D. Rosas, B. Fischl. NeuroImage 53(4):1181-1196, 2010. http://dx.doi.org/10.1016/j.neuroimage.2010.07.020 http://reuter.mit.edu/papers/reuter-robreg10.pdf Reading contexts of file /usr/local/freesurfer-6.0.0/average/HippoSF/atlas/compressionLookupTable.txt Constructing image-to-world transform from header information (asegMod.mgz) Returning the following transform: AffineTransform (0x7f2c9e34ecf0) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 420 Debug: Off Object Name: Observers: none Matrix: -1 0 0 0 0 1 0 -1 0 Offset: [133.4, -110, 128] Center: [0, 0, 0] Translation: [133.4, -110, 128] Inverse: -1 0 0 0 0 -1 0 1 0 Singular: 0 Constructing image-to-world transform from header information (/home/gustav/Desktop/preprocessing_h70/bert/tmp/hippoSF_T1_v10_right/imageDump.mgz) Returning the following transform: AffineTransform (0x7f2c9e34ecf0) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 577 Debug: Off Object Name: Observers: none Matrix: -0.309221 0.00925259 -0.0837584 -0.0337264 0.229969 0.214595 0.0253332 -0.109568 0.238449 Offset: [52.9678, -35.5968, -6.60806] Center: [0, 0, 0] Translation: [52.9678, -35.5968, -6.60806] Inverse: -3.27491 -0.291382 -0.888125 -0.563388 2.99331 -2.89177 0.0890539 1.40639 2.95935 Singular: 0 Transform before cropping: AffineTransform (0x7f2c9e34ecf0) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 579 Debug: Off Object Name: Observers: none Matrix: 0.309221 -0.00925259 0.0837584 -0.0253332 0.109568 -0.238449 -0.0337264 0.229969 0.214595 Offset: [80.4319, 134.608, 74.4032] Center: [0, 0, 0] Translation: [80.4319, 134.608, 74.4032] Inverse: 3.27491 0.888125 -0.291382 0.563388 2.89177 2.99331 -0.0890539 -2.95935 1.40639 Singular: 0 WorldToImageTransform before cropping: AffineTransform (0x7f2c9e340630) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 581 Debug: Off Object Name: Observers: none Matrix: -1 0 0 0 0 -1 0 1 0 Offset: [133.4, 128, 110] Center: [0, 0, 0] Translation: [133.4, 128, 110] Inverse: -1 0 0 0 0 1 0 -1 0 Singular: 0 m_BoundingBoxSize: [131, 241,99] minimalMappedCoordinate: [78.2113, 107.947,70.0187] maximalMappedCoordinate: [128.839, 160.904,150.626] Cropping with min [73 102 62] and max [134 166 159] m_OriginalImageRegion before checking margins: ImageRegion (0x7f2c9c6ab668) Dimension: 3 Index: [73, 102, 62] Size: [62, 65, 98] m_CroppedImageRegion before checking margins: ImageRegion (0x7f2c9c6ab630) Dimension: 3 Index: [0, 0, 0] Size: [62, 65, 98] m_OriginalImageRegion after checking margins: ImageRegion (0x7f2c9c6ab668) Dimension: 3 Index: [73, 102, 62] Size: [62, 65, 98] m_CroppedImageRegion after checking margins: ImageRegion (0x7f2c9c6ab630) Dimension: 3 Index: [0, 0, 0] Size: [62, 65, 98] Transform after cropping: AffineTransform (0x7f2c9e34ecf0) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 738 Debug: Off Object Name: Observers: none Matrix: 0.309221 -0.00925259 0.0837584 -0.0253332 0.109568 -0.238449 -0.0337264 0.229969 0.214595 Offset: [7.4319, 32.6081, 12.4032] Center: [0, 0, 0] Translation: [7.4319, 32.6081, 12.4032] Inverse: 3.27491 0.888125 -0.291382 0.563388 2.89177 2.99331 -0.0890539 -2.95935 1.40639 Singular: 0 WorldToImageTransform after cropping: AffineTransform (0x7f2c9e340630) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 739 Debug: Off Object Name: Observers: none Matrix: -1 0 0 0 0 -1 0 1 0 Offset: [60.3997, 26, 48] Center: [0, 0, 0] Translation: [60.3997, 26, 48] Inverse: -1 0 0 0 0 1 0 -1 0 Singular: 0 Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Warning: This concatenation operation includes an empty array with an incorrect number of rows. Concatenation including empty arrays will require all arrays to have the same number of rows in a future release. [> In segmentSubjectT1_autoEstimateAlveusML at 325] Reading contexts of file /usr/local/freesurfer-6.0.0/average/HippoSF/atlas/compressionLookupTable.txt -------------- Making Left-Amygdala map to reduced label 1 -------------- Making alveus map to reduced label 2 Making subiculum map to reduced label 2 Making Hippocampal_tail map to reduced label 2 Making molecular_layer_HP map to reduced label 2 Making GC-ML-DG map to reduced label 2 Making CA4 map to reduced label 2 Making CA1 map to reduced label 2 Making CA3 map to reduced label 2 Making HATA map to reduced label 2 Making fimbria map to reduced label 2 Making presubiculum map to reduced label 2 Making parasubiculum map to reduced label 2 Making hippocampal-fissure map to reduced label 2 -------------- Making Left-Cerebral-Cortex map to reduced label 3 -------------- Making Left-Cerebral-White-Matter map to reduced label 4 -------------- Making Left-Lateral-Ventricle map to reduced label 5 -------------- Making Left-choroid-plexus map to reduced label 6 -------------- Making Unknown map to reduced label 7 -------------- Making Left-VentralDC map to reduced label 8 -------------- Making Left-Putamen map to reduced label 9 -------------- Making Left-Pallidum map to reduced label 10 -------------- Making Left-Thalamus-Proper map to reduced label 11 -------------- Making Left-Accumbens-area map to reduced label 12 -------------- Making Left-Caudate map to reduced label 13 numberOfLabels: 13 Rasterizing mesh...here: 13 here2: 13 done Smoothing mesh collection with kernel size 3.000000 ...Smoothing class: 0 Smoothing class: 1 Smoothing class: 2 Smoothing class: 3 Smoothing class: 4 Smoothing class: 5 Smoothing class: 6 Smoothing class: 7 Smoothing class: 8 Smoothing class: 9 Smoothing class: 10 Smoothing class: 11 Smoothing class: 12 done numberOfImages = 1 Image: 4 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 100.000000 precisions[0][0][1] = 100.000000 precisions[0][0][2] = 100.000000 precisions[0][0][3] = 100.000000 precisions[0][0][4] = 100.000000 precisions[0][0][5] = 100.000000 precisions[0][0][6] = 100.000000 precisions[0][0][7] = 100.000000 precisions[0][0][8] = 100.000000 precisions[0][0][9] = 100.000000 precisions[0][0][10] = 100.000000 precisions[0][0][11] = 100.000000 precisions[0][0][12] = 100.000000 means[0][0] = 18.000000 means[0][1] = 17.000000 means[0][2] = 3.000000 means[0][3] = 2.000000 means[0][4] = 4.000000 means[0][5] = 31.000000 means[0][6] = 1.000000 means[0][7] = 28.000000 means[0][8] = 12.000000 means[0][9] = 13.000000 means[0][10] = 10.000000 means[0][11] = 26.000000 means[0][12] = 11.000000 Resolution 1, iteration 1 Did one deformation step of max. 0.25 voxels in 3.0945 seconds minLogLikelihoodTimesPrior = -2.7461e+04 Resolution 1, iteration 2 Did one deformation step of max. 0.50511 voxels in 1.7535 seconds minLogLikelihoodTimesPrior = -2.7615e+04 Resolution 1, iteration 3 Did one deformation step of max. 0.32017 voxels in 2.2632 seconds minLogLikelihoodTimesPrior = -2.7756e+04 Resolution 1, iteration 4 Did one deformation step of max. 0.28323 voxels in 1.1065 seconds minLogLikelihoodTimesPrior = -2.7934e+04 Resolution 1, iteration 5 Did one deformation step of max. 0.022505 voxels in 3.3234 seconds minLogLikelihoodTimesPrior = -2.7950e+04 Resolution 1, iteration 6 Did one deformation step of max. 0.0027481 voxels in 1.0992 seconds minLogLikelihoodTimesPrior = -2.7973e+04 Resolution 1, iteration 7 Did one deformation step of max. 0.0033813 voxels in 4.9309 seconds minLogLikelihoodTimesPrior = -2.7974e+04 Resolution 1, iteration 8 Did one deformation step of max. 0.00027028 voxels in 1.1593 seconds minLogLikelihoodTimesPrior = -2.7977e+04 Resolution 1, iteration 9 Did one deformation step of max. 0.0014189 voxels in 4.1312 seconds minLogLikelihoodTimesPrior = -2.7977e+04 Resolution 1, iteration 10 Did one deformation step of max. 1.8029e-05 voxels in 1.0766 seconds minLogLikelihoodTimesPrior = -2.7977e+04 Resolution 1, iteration 11 Did one deformation step of max. 0.0001861 voxels in 6.5075 seconds minLogLikelihoodTimesPrior = -2.7977e+04 Resolution 1, iteration 12 Did one deformation step of max. 5.232e-09 voxels in 1.0458 seconds minLogLikelihoodTimesPrior = -2.7977e+04 Resolution 1, iteration 13 Did one deformation step of max. 0 voxels in 4.6546 seconds minLogLikelihoodTimesPrior = -2.7977e+04 Smoothing mesh collection with kernel size 2.000000 ...Smoothing class: 0 Smoothing class: 1 Smoothing class: 2 Smoothing class: 3 Smoothing class: 4 Smoothing class: 5 Smoothing class: 6 Smoothing class: 7 Smoothing class: 8 Smoothing class: 9 Smoothing class: 10 Smoothing class: 11 Smoothing class: 12 done numberOfImages = 1 Image: 4 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 100.000000 precisions[0][0][1] = 100.000000 precisions[0][0][2] = 100.000000 precisions[0][0][3] = 100.000000 precisions[0][0][4] = 100.000000 precisions[0][0][5] = 100.000000 precisions[0][0][6] = 100.000000 precisions[0][0][7] = 100.000000 precisions[0][0][8] = 100.000000 precisions[0][0][9] = 100.000000 precisions[0][0][10] = 100.000000 precisions[0][0][11] = 100.000000 precisions[0][0][12] = 100.000000 means[0][0] = 18.000000 means[0][1] = 17.000000 means[0][2] = 3.000000 means[0][3] = 2.000000 means[0][4] = 4.000000 means[0][5] = 31.000000 means[0][6] = 1.000000 means[0][7] = 28.000000 means[0][8] = 12.000000 means[0][9] = 13.000000 means[0][10] = 10.000000 means[0][11] = 26.000000 means[0][12] = 11.000000 Resolution 2, iteration 1 Did one deformation step of max. 0.25 voxels in 3.9446 seconds minLogLikelihoodTimesPrior = -3.0747e+04 Resolution 2, iteration 2 Did one deformation step of max. 0.20344 voxels in 1.0617 seconds minLogLikelihoodTimesPrior = -3.0772e+04 Resolution 2, iteration 3 Did one deformation step of max. 0.10228 voxels in 1.0381 seconds minLogLikelihoodTimesPrior = -3.0817e+04 Resolution 2, iteration 4 Did one deformation step of max. 0.077351 voxels in 1.0217 seconds minLogLikelihoodTimesPrior = -3.0903e+04 Resolution 2, iteration 5 Did one deformation step of max. 0.10543 voxels in 1.2238 seconds minLogLikelihoodTimesPrior = -3.0986e+04 Resolution 2, iteration 6 Did one deformation step of max. 0.10506 voxels in 0.9873 seconds minLogLikelihoodTimesPrior = -3.1146e+04 Resolution 2, iteration 7 Did one deformation step of max. 0.20094 voxels in 1.0776 seconds minLogLikelihoodTimesPrior = -3.1412e+04 Resolution 2, iteration 8 Did one deformation step of max. 0.33436 voxels in 1.0938 seconds minLogLikelihoodTimesPrior = -3.1819e+04 Resolution 2, iteration 9 Did one deformation step of max. 0.11464 voxels in 1.3678 seconds minLogLikelihoodTimesPrior = -3.1884e+04 Resolution 2, iteration 10 Did one deformation step of max. 0.018027 voxels in 2.1783 seconds minLogLikelihoodTimesPrior = -3.1893e+04 Resolution 2, iteration 11 Did one deformation step of max. 0.0031775 voxels in 1.157 seconds minLogLikelihoodTimesPrior = -3.1903e+04 Resolution 2, iteration 12 Did one deformation step of max. 0.0058064 voxels in 1.043 seconds minLogLikelihoodTimesPrior = -3.1917e+04 Resolution 2, iteration 13 Did one deformation step of max. 0.017434 voxels in 1.1483 seconds minLogLikelihoodTimesPrior = -3.1931e+04 Resolution 2, iteration 14 Did one deformation step of max. 0.017478 voxels in 1.1344 seconds minLogLikelihoodTimesPrior = -3.1949e+04 Resolution 2, iteration 15 Did one deformation step of max. 0.023775 voxels in 1.4968 seconds minLogLikelihoodTimesPrior = -3.1953e+04 Resolution 2, iteration 16 Did one deformation step of max. 0.010704 voxels in 1.1371 seconds minLogLikelihoodTimesPrior = -3.1958e+04 Resolution 2, iteration 17 Did one deformation step of max. 0.00048545 voxels in 8.2767 seconds minLogLikelihoodTimesPrior = -3.1958e+04 Resolution 2, iteration 18 Did one deformation step of max. 4.2711e-06 voxels in 1.0353 seconds minLogLikelihoodTimesPrior = -3.1958e+04 Resolution 2, iteration 19 Did one deformation step of max. 1.3739e-06 voxels in 1.0073 seconds minLogLikelihoodTimesPrior = -3.1958e+04 Resolution 2, iteration 20 Did one deformation step of max. 2.0962e-05 voxels in 1.0782 seconds minLogLikelihoodTimesPrior = -3.1958e+04 Resolution 2, iteration 21 Did one deformation step of max. 5.4711e-06 voxels in 1.0835 seconds minLogLikelihoodTimesPrior = -3.1958e+04 Resolution 2, iteration 22 Did one deformation step of max. 7.9488e-05 voxels in 1.055 seconds minLogLikelihoodTimesPrior = -3.1958e+04 Resolution 2, iteration 23 Did one deformation step of max. 2.1777e-05 voxels in 0.98464 seconds minLogLikelihoodTimesPrior = -3.1959e+04 Resolution 2, iteration 24 Did one deformation step of max. 4.4161e-05 voxels in 0.97578 seconds minLogLikelihoodTimesPrior = -3.1959e+04 Resolution 2, iteration 25 Did one deformation step of max. 0.00064599 voxels in 1.0222 seconds minLogLikelihoodTimesPrior = -3.1959e+04 Resolution 2, iteration 26 Did one deformation step of max. 0.00017117 voxels in 0.98208 seconds minLogLikelihoodTimesPrior = -3.1960e+04 Resolution 2, iteration 27 Did one deformation step of max. 0.0020532 voxels in 1.0966 seconds minLogLikelihoodTimesPrior = -3.1961e+04 Resolution 2, iteration 28 Did one deformation step of max. 0.00066598 voxels in 1.2097 seconds minLogLikelihoodTimesPrior = -3.1962e+04 Resolution 2, iteration 29 Did one deformation step of max. 0.007014 voxels in 1.1055 seconds minLogLikelihoodTimesPrior = -3.1964e+04 Resolution 2, iteration 30 Did one deformation step of max. 0.0028387 voxels in 1.1034 seconds minLogLikelihoodTimesPrior = -3.1966e+04 Resolution 2, iteration 31 Did one deformation step of max. 0.004746 voxels in 0.99347 seconds minLogLikelihoodTimesPrior = -3.1970e+04 Resolution 2, iteration 32 Did one deformation step of max. 0.029733 voxels in 1.1389 seconds minLogLikelihoodTimesPrior = -3.1971e+04 Resolution 2, iteration 33 Did one deformation step of max. 0.0026847 voxels in 1.1085 seconds minLogLikelihoodTimesPrior = -3.1973e+04 Resolution 2, iteration 34 Did one deformation step of max. 0.0068702 voxels in 0.98024 seconds minLogLikelihoodTimesPrior = -3.1977e+04 Resolution 2, iteration 35 Did one deformation step of max. 0.0080573 voxels in 0.93178 seconds minLogLikelihoodTimesPrior = -3.1984e+04 Resolution 2, iteration 36 Did one deformation step of max. 0.028347 voxels in 1.0371 seconds minLogLikelihoodTimesPrior = -3.1997e+04 Resolution 2, iteration 37 Did one deformation step of max. 0.026197 voxels in 1.0012 seconds minLogLikelihoodTimesPrior = -3.2019e+04 Resolution 2, iteration 38 Did one deformation step of max. 0.044284 voxels in 0.94437 seconds minLogLikelihoodTimesPrior = -3.2058e+04 Resolution 2, iteration 39 Did one deformation step of max. 0.11414 voxels in 0.95898 seconds minLogLikelihoodTimesPrior = -3.2127e+04 Resolution 2, iteration 40 Did one deformation step of max. 0.12451 voxels in 0.94759 seconds minLogLikelihoodTimesPrior = -3.2260e+04 Resolution 2, iteration 41 Did one deformation step of max. 0.12009 voxels in 1.7018 seconds minLogLikelihoodTimesPrior = -3.2357e+04 Resolution 2, iteration 42 Did one deformation step of max. 0.021829 voxels in 2.4493 seconds minLogLikelihoodTimesPrior = -3.2380e+04 Resolution 2, iteration 43 Did one deformation step of max. 0.0088129 voxels in 0.94738 seconds minLogLikelihoodTimesPrior = -3.2391e+04 Resolution 2, iteration 44 Did one deformation step of max. 0.079277 voxels in 0.89457 seconds minLogLikelihoodTimesPrior = -3.2392e+04 Resolution 2, iteration 45 Did one deformation step of max. 0.006347 voxels in 0.99014 seconds minLogLikelihoodTimesPrior = -3.2394e+04 Resolution 2, iteration 46 Did one deformation step of max. 0.001467 voxels in 1.068 seconds minLogLikelihoodTimesPrior = -3.2396e+04 Resolution 2, iteration 47 Did one deformation step of max. 0.0081698 voxels in 0.98387 seconds minLogLikelihoodTimesPrior = -3.2402e+04 Resolution 2, iteration 48 Did one deformation step of max. 0.0080466 voxels in 1.0595 seconds minLogLikelihoodTimesPrior = -3.2406e+04 Resolution 2, iteration 49 Did one deformation step of max. 0.01218 voxels in 1.0237 seconds minLogLikelihoodTimesPrior = -3.2413e+04 Resolution 2, iteration 50 Did one deformation step of max. 0.060177 voxels in 1.9772 seconds minLogLikelihoodTimesPrior = -3.2414e+04 Resolution 2, iteration 51 Did one deformation step of max. 0.00066928 voxels in 1.0298 seconds minLogLikelihoodTimesPrior = -3.2414e+04 Resolution 2, iteration 52 Did one deformation step of max. 0.0012881 voxels in 1.0596 seconds minLogLikelihoodTimesPrior = -3.2415e+04 Resolution 2, iteration 53 Did one deformation step of max. 0.0027565 voxels in 1.0949 seconds minLogLikelihoodTimesPrior = -3.2417e+04 Resolution 2, iteration 54 Did one deformation step of max. 0.0052359 voxels in 1.1034 seconds minLogLikelihoodTimesPrior = -3.2420e+04 Resolution 2, iteration 55 Did one deformation step of max. 0.010472 voxels in 1.0642 seconds minLogLikelihoodTimesPrior = -3.2427e+04 Resolution 2, iteration 56 Did one deformation step of max. 0.020468 voxels in 1.1419 seconds minLogLikelihoodTimesPrior = -3.2441e+04 Resolution 2, iteration 57 Did one deformation step of max. 0.034849 voxels in 1.0511 seconds minLogLikelihoodTimesPrior = -3.2468e+04 Resolution 2, iteration 58 Did one deformation step of max. 0.066306 voxels in 1.0777 seconds minLogLikelihoodTimesPrior = -3.2520e+04 Resolution 2, iteration 59 Did one deformation step of max. 0.08906 voxels in 1.0509 seconds minLogLikelihoodTimesPrior = -3.2619e+04 Resolution 2, iteration 60 Did one deformation step of max. 0.12826 voxels in 1.0036 seconds minLogLikelihoodTimesPrior = -3.2806e+04 Resolution 2, iteration 61 Did one deformation step of max. 0.16662 voxels in 2.0718 seconds minLogLikelihoodTimesPrior = -3.2980e+04 Resolution 2, iteration 62 Did one deformation step of max. 0.1187 voxels in 1.8142 seconds minLogLikelihoodTimesPrior = -3.3144e+04 Resolution 2, iteration 63 Did one deformation step of max. 0.15517 voxels in 1.239 seconds minLogLikelihoodTimesPrior = -3.3276e+04 Resolution 2, iteration 64 Did one deformation step of max. 0.12601 voxels in 1.0497 seconds minLogLikelihoodTimesPrior = -3.3397e+04 Resolution 2, iteration 65 Did one deformation step of max. 0.038814 voxels in 1.0567 seconds minLogLikelihoodTimesPrior = -3.3404e+04 Resolution 2, iteration 66 Did one deformation step of max. 0.053674 voxels in 1.0089 seconds minLogLikelihoodTimesPrior = -3.3414e+04 Resolution 2, iteration 67 Did one deformation step of max. 0.039753 voxels in 0.95249 seconds minLogLikelihoodTimesPrior = -3.3433e+04 Resolution 2, iteration 68 Did one deformation step of max. 0.050789 voxels in 1.0027 seconds minLogLikelihoodTimesPrior = -3.3475e+04 Resolution 2, iteration 69 Did one deformation step of max. 0.062676 voxels in 1.9301 seconds minLogLikelihoodTimesPrior = -3.3514e+04 Resolution 2, iteration 70 Did one deformation step of max. 0.29888 voxels in 1.0913 seconds minLogLikelihoodTimesPrior = -3.3521e+04 Resolution 2, iteration 71 Did one deformation step of max. 0.027673 voxels in 3.1939 seconds minLogLikelihoodTimesPrior = -3.3521e+04 Resolution 2, iteration 72 Did one deformation step of max. 0.00012467 voxels in 1.0343 seconds minLogLikelihoodTimesPrior = -3.3521e+04 Resolution 2, iteration 73 Did one deformation step of max. 0.00021973 voxels in 1.0599 seconds minLogLikelihoodTimesPrior = -3.3521e+04 Resolution 2, iteration 74 Did one deformation step of max. 0.0005014 voxels in 0.96927 seconds minLogLikelihoodTimesPrior = -3.3522e+04 Resolution 2, iteration 75 Did one deformation step of max. 0.00081907 voxels in 0.98559 seconds minLogLikelihoodTimesPrior = -3.3522e+04 Resolution 2, iteration 76 Did one deformation step of max. 0.001812 voxels in 0.98845 seconds minLogLikelihoodTimesPrior = -3.3522e+04 Resolution 2, iteration 77 Did one deformation step of max. 0.0027891 voxels in 1.0078 seconds minLogLikelihoodTimesPrior = -3.3523e+04 Resolution 2, iteration 78 Did one deformation step of max. 0.0035593 voxels in 5.2761 seconds minLogLikelihoodTimesPrior = -3.3524e+04 Resolution 2, iteration 79 Did one deformation step of max. 0.00019638 voxels in 1.0805 seconds minLogLikelihoodTimesPrior = -3.3524e+04 Resolution 2, iteration 80 Did one deformation step of max. 0.00042627 voxels in 0.9834 seconds minLogLikelihoodTimesPrior = -3.3524e+04 Resolution 2, iteration 81 Did one deformation step of max. 0.00073529 voxels in 0.93915 seconds minLogLikelihoodTimesPrior = -3.3524e+04 Resolution 2, iteration 82 Did one deformation step of max. 0.001675 voxels in 0.98748 seconds minLogLikelihoodTimesPrior = -3.3524e+04 Resolution 2, iteration 83 Did one deformation step of max. 0.0026368 voxels in 1.0643 seconds minLogLikelihoodTimesPrior = -3.3525e+04 Resolution 2, iteration 84 Did one deformation step of max. 0.0084263 voxels in 1.0183 seconds minLogLikelihoodTimesPrior = -3.3527e+04 Resolution 2, iteration 85 Did one deformation step of max. 0.0080488 voxels in 1.0064 seconds minLogLikelihoodTimesPrior = -3.3529e+04 Resolution 2, iteration 86 Did one deformation step of max. 0.029722 voxels in 0.89145 seconds minLogLikelihoodTimesPrior = -3.3534e+04 Resolution 2, iteration 87 Did one deformation step of max. 0.020825 voxels in 1.032 seconds minLogLikelihoodTimesPrior = -3.3543e+04 Resolution 2, iteration 88 Did one deformation step of max. 0.041422 voxels in 1.002 seconds minLogLikelihoodTimesPrior = -3.3560e+04 Resolution 2, iteration 89 Did one deformation step of max. 0.057381 voxels in 1.0092 seconds minLogLikelihoodTimesPrior = -3.3593e+04 Resolution 2, iteration 90 Did one deformation step of max. 0.089053 voxels in 1.0471 seconds minLogLikelihoodTimesPrior = -3.3654e+04 Resolution 2, iteration 91 Did one deformation step of max. 0.064458 voxels in 1.9063 seconds minLogLikelihoodTimesPrior = -3.3712e+04 Resolution 2, iteration 92 Did one deformation step of max. 0.038543 voxels in 1.7778 seconds minLogLikelihoodTimesPrior = -3.3768e+04 Resolution 2, iteration 93 Did one deformation step of max. 0.10163 voxels in 0.91584 seconds minLogLikelihoodTimesPrior = -3.3873e+04 Resolution 2, iteration 94 Did one deformation step of max. 0.19243 voxels in 0.95208 seconds minLogLikelihoodTimesPrior = -3.4066e+04 Resolution 2, iteration 95 Did one deformation step of max. 0.088132 voxels in 2.5267 seconds minLogLikelihoodTimesPrior = -3.4147e+04 Resolution 2, iteration 96 Did one deformation step of max. 0.16535 voxels in 0.9489 seconds minLogLikelihoodTimesPrior = -3.4271e+04 Resolution 2, iteration 97 Did one deformation step of max. 0.1171 voxels in 1.4045 seconds minLogLikelihoodTimesPrior = -3.4359e+04 Resolution 2, iteration 98 Did one deformation step of max. 0.1204 voxels in 1.115 seconds minLogLikelihoodTimesPrior = -3.4430e+04 Resolution 2, iteration 99 Did one deformation step of max. 0.048154 voxels in 1.2091 seconds minLogLikelihoodTimesPrior = -3.4461e+04 Resolution 2, iteration 100 Did one deformation step of max. 0.054506 voxels in 1.0121 seconds minLogLikelihoodTimesPrior = -3.4489e+04 Fitting mesh to synthetic image from ASEG took 187.8804 seconds Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points threshold mask volume at 0.5 threshold mask volume at 0.5 Constructing image-to-world transform from header information (T1resampled.mgz) Returning the following transform: AffineTransform (0x7f2b4fc07500) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 99326897 Debug: Off Object Name: Observers: none Matrix: -0.33333 0 0 0 0 0.33333 0 -0.33333 0 Offset: [58.5661, -36.1663, 21.1664] Center: [0, 0, 0] Translation: [58.5661, -36.1663, 21.1664] Inverse: -3.00003 0 0 0 0 -3.00003 0 3.00003 0 Singular: 0 Constructing image-to-world transform from header information (/home/gustav/Desktop/preprocessing_h70/bert/tmp/hippoSF_T1_v10_right/imageDump.mgz) Returning the following transform: AffineTransform (0x7f2b4fd0c3e0) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 99328605 Debug: Off Object Name: Observers: none Matrix: -0.309221 0.00925259 -0.0837584 -0.0337264 0.229969 0.214595 0.0253332 -0.109568 0.238449 Offset: [52.9678, -35.5968, -6.60806] Center: [0, 0, 0] Translation: [52.9678, -35.5968, -6.60806] Inverse: -3.27491 -0.291382 -0.888125 -0.563388 2.99331 -2.89177 0.0890539 1.40639 2.95935 Singular: 0 Transform before cropping: AffineTransform (0x7f2b4fd0c3e0) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 99328607 Debug: Off Object Name: Observers: none Matrix: 0.927672 -0.0277581 0.251278 -0.0760004 0.328707 -0.715353 -0.10118 0.689913 0.643792 Offset: [16.795, 83.3242, 1.70848] Center: [0, 0, 0] Translation: [16.795, 83.3242, 1.70848] Inverse: 1.09163 0.296039 -0.0971263 0.187794 0.963914 0.99776 -0.0296843 -0.986441 0.468793 Singular: 0 WorldToImageTransform before cropping: AffineTransform (0x7f2b4fd06b40) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 99328609 Debug: Off Object Name: Observers: none Matrix: -3.00003 0 0 0 0 -3.00003 0 3.00003 0 Offset: [175.7, 63.4998, 108.5] Center: [0, 0, 0] Translation: [175.7, 63.4998, 108.5] Inverse: -0.33333 0 0 0 0 0.33333 0 -0.33333 0 Singular: 0 m_BoundingBoxSize: [131, 241,99] minimalMappedCoordinate: [10.1331, 3.3395,-11.4449] maximalMappedCoordinate: [162.018, 162.214,230.379] Cropping with min [-5 -13 -35] and max [178 179 255] m_OriginalImageRegion before checking margins: ImageRegion (0x7f2b4fd1a988) Dimension: 3 Index: [-5, -13, -35] Size: [184, 193, 291] m_CroppedImageRegion before checking margins: ImageRegion (0x7f2b4fd1a950) Dimension: 3 Index: [0, 0, 0] Size: [184, 193, 291] m_OriginalImageRegion after checking margins: ImageRegion (0x7f2b4fd1a988) Dimension: 3 Index: [0, 0, 0] Size: [175, 172, 214] m_CroppedImageRegion after checking margins: ImageRegion (0x7f2b4fd1a950) Dimension: 3 Index: [5, 13, 35] Size: [175, 172, 214] Transform after cropping: AffineTransform (0x7f2b4fd0c3e0) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 99330317 Debug: Off Object Name: Observers: none Matrix: 0.927672 -0.0277581 0.251278 -0.0760004 0.328707 -0.715353 -0.10118 0.689913 0.643792 Offset: [21.795, 96.3242, 36.7085] Center: [0, 0, 0] Translation: [21.795, 96.3242, 36.7085] Inverse: 1.09163 0.296039 -0.0971263 0.187794 0.963914 0.99776 -0.0296843 -0.986441 0.468793 Singular: 0 WorldToImageTransform after cropping: AffineTransform (0x7f2b4fd06b40) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 99330318 Debug: Off Object Name: Observers: none Matrix: -3.00003 0 0 0 0 -3.00003 0 3.00003 0 Offset: [180.7, 76.4998, 143.5] Center: [0, 0, 0] Translation: [180.7, 76.4998, 143.5] Inverse: -0.33333 0 0 0 0 0.33333 0 -0.33333 0 Singular: 0 Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points numberOfLabels: 25 Rasterizing mesh...here: 25 here2: 25 done Reading contexts of file /usr/local/freesurfer-6.0.0/average/HippoSF/atlas/compressionLookupTable.txt -------------- Making Left-Cerebral-Cortex map to reduced label 1 Making Left-Amygdala map to reduced label 1 Making subiculum map to reduced label 1 Making Hippocampal_tail map to reduced label 1 Making GC-ML-DG map to reduced label 1 Making CA4 map to reduced label 1 Making presubiculum map to reduced label 1 Making CA1 map to reduced label 1 Making parasubiculum map to reduced label 1 Making CA3 map to reduced label 1 Making HATA map to reduced label 1 Making molecular_layer_HP map to reduced label 1 -------------- Making Left-Cerebral-White-Matter map to reduced label 2 Making fimbria map to reduced label 2 -------------- Making alveus map to reduced label 3 -------------- Making Left-Lateral-Ventricle map to reduced label 4 -------------- Making hippocampal-fissure map to reduced label 5 -------------- Making Left-Pallidum map to reduced label 6 -------------- Making Left-Putamen map to reduced label 7 -------------- Making Left-Caudate map to reduced label 8 -------------- Making Left-Thalamus-Proper map to reduced label 9 -------------- Making Left-choroid-plexus map to reduced label 10 -------------- Making Left-VentralDC map to reduced label 11 -------------- Making Left-Accumbens-area map to reduced label 12 -------------- Making Unknown map to reduced label 13 Computing hyperparameters for estimation of Gaussian parameters Estimating typical intensities of alveus numberOfLabels: 13 Rasterizing mesh...here: 13 here2: 13 done Smoothing mesh collection with kernel size 1.500000 ...Smoothing class: 0 Smoothing class: 1 Smoothing class: 2 Smoothing class: 3 Smoothing class: 4 Smoothing class: 5 Smoothing class: 6 Smoothing class: 7 Smoothing class: 8 Smoothing class: 9 Smoothing class: 10 Smoothing class: 11 Smoothing class: 12 done numberOfImages = 1 Image: 0 Iteration 1 of 7 numberOfLabels: 13 Rasterizing mesh...here: 13 here2: 13 done minLogLikelihood = 2.2327e+06 minLogLikelihood = 2.1824e+06 minLogLikelihood = 2.1747e+06 minLogLikelihood = 2.1735e+06 minLogLikelihood = 2.1732e+06 minLogLikelihood = 2.1732e+06 minLogLikelihood = 2.1732e+06 EM converged! ans = 75.3402 98.2070 86.2592 37.1587 65.2366 93.8109 83.9655 82.0000 89.9634 73.0559 91.9874 73.9999 44.6238 ans = 1.0e+06 * 0.0015 0.0020 0.0146 1.2937 0.0008 0.0008 0.0024 0.0011 0.0018 0.0971 0.0004 0.0000 0.0856 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.026030 precisions[0][0][1] = 0.022274 precisions[0][0][2] = 0.008289 precisions[0][0][3] = 0.000879 precisions[0][0][4] = 0.036145 precisions[0][0][5] = 0.035465 precisions[0][0][6] = 0.020473 precisions[0][0][7] = 0.030819 precisions[0][0][8] = 0.023730 precisions[0][0][9] = 0.003209 precisions[0][0][10] = 0.049682 precisions[0][0][11] = 0.500263 precisions[0][0][12] = 0.003418 means[0][0] = 75.340225 means[0][1] = 98.207024 means[0][2] = 86.259224 means[0][3] = 37.158657 means[0][4] = 65.236649 means[0][5] = 93.810905 means[0][6] = 83.965469 means[0][7] = 81.999962 means[0][8] = 89.963440 means[0][9] = 73.055878 means[0][10] = 91.987450 means[0][11] = 73.999893 means[0][12] = 44.623821 Resolution level 1 iteration 1 deformation iterations 1 Did one deformation step of max. 0.5 voxels in 4.4998 seconds minLogLikelihoodTimesPrior = 2.1889e+06 Resolution level 1 iteration 1 deformation iterations 2 Did one deformation step of max. 0.23897 voxels in 2.0656 seconds minLogLikelihoodTimesPrior = 2.1855e+06 Resolution level 1 iteration 1 deformation iterations 3 Did one deformation step of max. 0.13085 voxels in 5.8334 seconds minLogLikelihoodTimesPrior = 2.1847e+06 Resolution level 1 iteration 1 deformation iterations 4 Did one deformation step of max. 0.12009 voxels in 1.9521 seconds minLogLikelihoodTimesPrior = 2.1831e+06 Resolution level 1 iteration 1 deformation iterations 5 Did one deformation step of max. 0.091842 voxels in 4.2874 seconds minLogLikelihoodTimesPrior = 2.1823e+06 Resolution level 1 iteration 1 deformation iterations 6 Did one deformation step of max. 0.10665 voxels in 2.0622 seconds minLogLikelihoodTimesPrior = 2.1808e+06 Resolution level 1 iteration 1 deformation iterations 7 Did one deformation step of max. 0.15461 voxels in 2.2533 seconds minLogLikelihoodTimesPrior = 2.1794e+06 Resolution level 1 iteration 1 deformation iterations 8 Did one deformation step of max. 0.05789 voxels in 5.9495 seconds minLogLikelihoodTimesPrior = 2.1789e+06 Resolution level 1 iteration 1 deformation iterations 9 Did one deformation step of max. 0.080374 voxels in 2.0247 seconds minLogLikelihoodTimesPrior = 2.1779e+06 Resolution level 1 iteration 1 deformation iterations 10 Did one deformation step of max. 0.073804 voxels in 1.9836 seconds minLogLikelihoodTimesPrior = 2.1777e+06 Resolution level 1 iteration 1 deformation iterations 11 Did one deformation step of max. 0.044661 voxels in 1.9919 seconds minLogLikelihoodTimesPrior = 2.1774e+06 Resolution level 1 iteration 1 deformation iterations 12 Did one deformation step of max. 0.064078 voxels in 1.8453 seconds minLogLikelihoodTimesPrior = 2.1769e+06 Resolution level 1 iteration 1 deformation iterations 13 Did one deformation step of max. 0.19109 voxels in 1.8529 seconds minLogLikelihoodTimesPrior = 2.1758e+06 Resolution level 1 iteration 1 deformation iterations 14 Did one deformation step of max. 0.22554 voxels in 1.8474 seconds minLogLikelihoodTimesPrior = 2.1738e+06 Resolution level 1 iteration 1 deformation iterations 15 Did one deformation step of max. 0.25422 voxels in 1.9119 seconds minLogLikelihoodTimesPrior = 2.1701e+06 Resolution level 1 iteration 1 deformation iterations 16 Did one deformation step of max. 0.028467 voxels in 7.9775 seconds minLogLikelihoodTimesPrior = 2.1697e+06 Resolution level 1 iteration 1 deformation iterations 17 Did one deformation step of max. 0.074488 voxels in 1.9617 seconds minLogLikelihoodTimesPrior = 2.1696e+06 Resolution level 1 iteration 1 deformation iterations 18 Did one deformation step of max. 0.017714 voxels in 1.9745 seconds minLogLikelihoodTimesPrior = 2.1695e+06 Resolution level 1 iteration 1 deformation iterations 19 Did one deformation step of max. 0.027074 voxels in 1.9306 seconds minLogLikelihoodTimesPrior = 2.1691e+06 Resolution level 1 iteration 1 deformation iterations 20 Did one deformation step of max. 0.063543 voxels in 1.966 seconds minLogLikelihoodTimesPrior = 2.1684e+06 Iteration 2 of 7 numberOfLabels: 13 Rasterizing mesh...here: 13 here2: 13 done minLogLikelihood = 2.1557e+06 minLogLikelihood = 2.1555e+06 minLogLikelihood = 2.1555e+06 minLogLikelihood = 2.1555e+06 EM converged! ans = 75.3810 98.2869 86.3025 36.9183 65.2264 93.8112 83.9624 82.0000 89.9682 72.2165 91.9824 73.9999 44.5607 ans = 1.0e+06 * 0.0014 0.0019 0.0124 1.2146 0.0006 0.0008 0.0020 0.0010 0.0016 0.0864 0.0004 0.0000 0.0816 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.026877 precisions[0][0][1] = 0.023219 precisions[0][0][2] = 0.008965 precisions[0][0][3] = 0.000907 precisions[0][0][4] = 0.040711 precisions[0][0][5] = 0.036438 precisions[0][0][6] = 0.022218 precisions[0][0][7] = 0.032324 precisions[0][0][8] = 0.024698 precisions[0][0][9] = 0.003403 precisions[0][0][10] = 0.050791 precisions[0][0][11] = 0.716368 precisions[0][0][12] = 0.003500 means[0][0] = 75.381050 means[0][1] = 98.286873 means[0][2] = 86.302490 means[0][3] = 36.918327 means[0][4] = 65.226418 means[0][5] = 93.811234 means[0][6] = 83.962418 means[0][7] = 81.999962 means[0][8] = 89.968170 means[0][9] = 72.216522 means[0][10] = 91.982407 means[0][11] = 73.999886 means[0][12] = 44.560688 Resolution level 1 iteration 2 deformation iterations 1 Did one deformation step of max. 0.25 voxels in 5.315 seconds minLogLikelihoodTimesPrior = 2.1649e+06 Resolution level 1 iteration 2 deformation iterations 2 Did one deformation step of max. 0.47475 voxels in 1.929 seconds minLogLikelihoodTimesPrior = 2.1590e+06 Resolution level 1 iteration 2 deformation iterations 3 Did one deformation step of max. 0.40172 voxels in 2.044 seconds minLogLikelihoodTimesPrior = 2.1549e+06 Resolution level 1 iteration 2 deformation iterations 4 Did one deformation step of max. 0.55727 voxels in 2.0624 seconds minLogLikelihoodTimesPrior = 2.1545e+06 Resolution level 1 iteration 2 deformation iterations 5 Did one deformation step of max. 0.099856 voxels in 1.809 seconds minLogLikelihoodTimesPrior = 2.1539e+06 Resolution level 1 iteration 2 deformation iterations 6 Did one deformation step of max. 0.15598 voxels in 1.858 seconds minLogLikelihoodTimesPrior = 2.1527e+06 Resolution level 1 iteration 2 deformation iterations 7 Did one deformation step of max. 0.14361 voxels in 2.5848 seconds minLogLikelihoodTimesPrior = 2.1515e+06 Resolution level 1 iteration 2 deformation iterations 8 Did one deformation step of max. 0.32476 voxels in 2.0633 seconds minLogLikelihoodTimesPrior = 2.1494e+06 Resolution level 1 iteration 2 deformation iterations 9 Did one deformation step of max. 0.11733 voxels in 2.9892 seconds minLogLikelihoodTimesPrior = 2.1485e+06 Resolution level 1 iteration 2 deformation iterations 10 Did one deformation step of max. 0.1161 voxels in 2.5122 seconds minLogLikelihoodTimesPrior = 2.1477e+06 Resolution level 1 iteration 2 deformation iterations 11 Did one deformation step of max. 0.25214 voxels in 2.0433 seconds minLogLikelihoodTimesPrior = 2.1467e+06 Resolution level 1 iteration 2 deformation iterations 12 Did one deformation step of max. 0.14084 voxels in 2.4678 seconds minLogLikelihoodTimesPrior = 2.1463e+06 Resolution level 1 iteration 2 deformation iterations 13 Did one deformation step of max. 0.20367 voxels in 2.2214 seconds minLogLikelihoodTimesPrior = 2.1457e+06 Resolution level 1 iteration 2 deformation iterations 14 Did one deformation step of max. 0.53352 voxels in 1.8636 seconds minLogLikelihoodTimesPrior = 2.1448e+06 Resolution level 1 iteration 2 deformation iterations 15 Did one deformation step of max. 0.14851 voxels in 2.0949 seconds minLogLikelihoodTimesPrior = 2.1444e+06 Resolution level 1 iteration 2 deformation iterations 16 Did one deformation step of max. 0.11907 voxels in 2.5224 seconds minLogLikelihoodTimesPrior = 2.1440e+06 Resolution level 1 iteration 2 deformation iterations 17 Did one deformation step of max. 0.11692 voxels in 1.9852 seconds minLogLikelihoodTimesPrior = 2.1433e+06 Resolution level 1 iteration 2 deformation iterations 18 Did one deformation step of max. 0.16433 voxels in 2.2926 seconds minLogLikelihoodTimesPrior = 2.1430e+06 Resolution level 1 iteration 2 deformation iterations 19 Did one deformation step of max. 0.10984 voxels in 2.0969 seconds minLogLikelihoodTimesPrior = 2.1424e+06 Resolution level 1 iteration 2 deformation iterations 20 Did one deformation step of max. 0.31328 voxels in 2.1487 seconds minLogLikelihoodTimesPrior = 2.1414e+06 Iteration 3 of 7 numberOfLabels: 13 Rasterizing mesh...here: 13 here2: 13 done minLogLikelihood = 2.1268e+06 minLogLikelihood = 2.1265e+06 minLogLikelihood = 2.1264e+06 minLogLikelihood = 2.1264e+06 EM converged! ans = 75.4407 98.3881 86.3659 36.5410 65.2170 93.8192 83.9619 82.0000 89.9751 70.5638 91.9570 73.9999 44.4627 ans = 1.0e+06 * 0.0012 0.0017 0.0102 1.1078 0.0005 0.0007 0.0017 0.0009 0.0014 0.0676 0.0004 0.0000 0.0757 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.028294 precisions[0][0][1] = 0.024565 precisions[0][0][2] = 0.009896 precisions[0][0][3] = 0.000950 precisions[0][0][4] = 0.044153 precisions[0][0][5] = 0.038859 precisions[0][0][6] = 0.024539 precisions[0][0][7] = 0.033878 precisions[0][0][8] = 0.026354 precisions[0][0][9] = 0.003846 precisions[0][0][10] = 0.051549 precisions[0][0][11] = 0.875474 precisions[0][0][12] = 0.003635 means[0][0] = 75.440727 means[0][1] = 98.388123 means[0][2] = 86.365883 means[0][3] = 36.540970 means[0][4] = 65.216980 means[0][5] = 93.819221 means[0][6] = 83.961876 means[0][7] = 81.999962 means[0][8] = 89.975136 means[0][9] = 70.563759 means[0][10] = 91.956963 means[0][11] = 73.999886 means[0][12] = 44.462688 Resolution level 1 iteration 3 deformation iterations 1 Did one deformation step of max. 0.25 voxels in 6.4005 seconds minLogLikelihoodTimesPrior = 2.1411e+06 Resolution level 1 iteration 3 deformation iterations 2 Did one deformation step of max. 0.10734 voxels in 2.0188 seconds minLogLikelihoodTimesPrior = 2.1408e+06 Resolution level 1 iteration 3 deformation iterations 3 Did one deformation step of max. 0.089846 voxels in 2.0907 seconds minLogLikelihoodTimesPrior = 2.1403e+06 Resolution level 1 iteration 3 deformation iterations 4 Did one deformation step of max. 0.18267 voxels in 2.054 seconds minLogLikelihoodTimesPrior = 2.1393e+06 Resolution level 1 iteration 3 deformation iterations 5 Did one deformation step of max. 0.15576 voxels in 2.7068 seconds minLogLikelihoodTimesPrior = 2.1383e+06 Resolution level 1 iteration 3 deformation iterations 6 Did one deformation step of max. 0.1201 voxels in 2.8195 seconds minLogLikelihoodTimesPrior = 2.1376e+06 Resolution level 1 iteration 3 deformation iterations 7 Did one deformation step of max. 0.19008 voxels in 1.9225 seconds minLogLikelihoodTimesPrior = 2.1363e+06 Resolution level 1 iteration 3 deformation iterations 8 Did one deformation step of max. 0.38959 voxels in 2.1016 seconds minLogLikelihoodTimesPrior = 2.1360e+06 Resolution level 1 iteration 3 deformation iterations 9 Did one deformation step of max. 0.19065 voxels in 1.9033 seconds minLogLikelihoodTimesPrior = 2.1357e+06 Resolution level 1 iteration 3 deformation iterations 10 Did one deformation step of max. 0.11563 voxels in 4.0294 seconds minLogLikelihoodTimesPrior = 2.1355e+06 Resolution level 1 iteration 3 deformation iterations 11 Did one deformation step of max. 0.10428 voxels in 1.9772 seconds minLogLikelihoodTimesPrior = 2.1354e+06 Resolution level 1 iteration 3 deformation iterations 12 Did one deformation step of max. 0.073593 voxels in 1.9327 seconds minLogLikelihoodTimesPrior = 2.1353e+06 Resolution level 1 iteration 3 deformation iterations 13 Did one deformation step of max. 0.11974 voxels in 1.9655 seconds minLogLikelihoodTimesPrior = 2.1351e+06 Resolution level 1 iteration 3 deformation iterations 14 Did one deformation step of max. 0.17003 voxels in 1.921 seconds minLogLikelihoodTimesPrior = 2.1347e+06 Resolution level 1 iteration 3 deformation iterations 15 Did one deformation step of max. 0.1377 voxels in 1.9229 seconds minLogLikelihoodTimesPrior = 2.1340e+06 Resolution level 1 iteration 3 deformation iterations 16 Did one deformation step of max. 0.053933 voxels in 3.5094 seconds minLogLikelihoodTimesPrior = 2.1337e+06 Resolution level 1 iteration 3 deformation iterations 17 Did one deformation step of max. 0.088586 voxels in 1.9702 seconds minLogLikelihoodTimesPrior = 2.1331e+06 Resolution level 1 iteration 3 deformation iterations 18 Did one deformation step of max. 0.15055 voxels in 2.1715 seconds minLogLikelihoodTimesPrior = 2.1330e+06 Resolution level 1 iteration 3 deformation iterations 19 Did one deformation step of max. 0.046263 voxels in 2.0131 seconds minLogLikelihoodTimesPrior = 2.1329e+06 Resolution level 1 iteration 3 deformation iterations 20 Did one deformation step of max. 0.063398 voxels in 2.025 seconds minLogLikelihoodTimesPrior = 2.1326e+06 Iteration 4 of 7 numberOfLabels: 13 Rasterizing mesh...here: 13 here2: 13 done minLogLikelihood = 2.1157e+06 minLogLikelihood = 2.1156e+06 minLogLikelihood = 2.1156e+06 EM converged! ans = 75.4645 98.4250 86.4033 36.4105 65.2143 93.8276 83.9636 82.0000 89.9767 69.8329 91.9421 73.9999 44.4321 ans = 1.0e+06 * 0.0012 0.0016 0.0088 1.0730 0.0005 0.0006 0.0015 0.0008 0.0014 0.0597 0.0004 0.0000 0.0737 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.028794 precisions[0][0][1] = 0.025083 precisions[0][0][2] = 0.010632 precisions[0][0][3] = 0.000965 precisions[0][0][4] = 0.045825 precisions[0][0][5] = 0.040388 precisions[0][0][6] = 0.025447 precisions[0][0][7] = 0.034452 precisions[0][0][8] = 0.026945 precisions[0][0][9] = 0.004093 precisions[0][0][10] = 0.051710 precisions[0][0][11] = 0.950068 precisions[0][0][12] = 0.003684 means[0][0] = 75.464478 means[0][1] = 98.425049 means[0][2] = 86.403313 means[0][3] = 36.410477 means[0][4] = 65.214256 means[0][5] = 93.827644 means[0][6] = 83.963554 means[0][7] = 81.999962 means[0][8] = 89.976738 means[0][9] = 69.832909 means[0][10] = 91.942116 means[0][11] = 73.999878 means[0][12] = 44.432091 Resolution level 1 iteration 4 deformation iterations 1 Did one deformation step of max. 0.0625 voxels in 6.2232 seconds minLogLikelihoodTimesPrior = 2.1322e+06 Resolution level 1 iteration 4 deformation iterations 2 Did one deformation step of max. 0.08984 voxels in 1.9939 seconds minLogLikelihoodTimesPrior = 2.1315e+06 Resolution level 1 iteration 4 deformation iterations 3 Did one deformation step of max. 0.16438 voxels in 2.0714 seconds minLogLikelihoodTimesPrior = 2.1309e+06 Resolution level 1 iteration 4 deformation iterations 4 Did one deformation step of max. 0.1062 voxels in 3.9658 seconds minLogLikelihoodTimesPrior = 2.1304e+06 Resolution level 1 iteration 4 deformation iterations 5 Did one deformation step of max. 0.14724 voxels in 3.4434 seconds minLogLikelihoodTimesPrior = 2.1303e+06 Resolution level 1 iteration 4 deformation iterations 6 Did one deformation step of max. 0.1132 voxels in 2.0013 seconds minLogLikelihoodTimesPrior = 2.1302e+06 Resolution level 1 iteration 4 deformation iterations 7 Did one deformation step of max. 0.091446 voxels in 1.985 seconds minLogLikelihoodTimesPrior = 2.1301e+06 Resolution level 1 iteration 4 deformation iterations 8 Did one deformation step of max. 0.088829 voxels in 2.5839 seconds minLogLikelihoodTimesPrior = 2.1299e+06 Resolution level 1 iteration 4 deformation iterations 9 Did one deformation step of max. 0.086292 voxels in 2.0189 seconds minLogLikelihoodTimesPrior = 2.1296e+06 Resolution level 1 iteration 4 deformation iterations 10 Did one deformation step of max. 0.11978 voxels in 1.981 seconds minLogLikelihoodTimesPrior = 2.1291e+06 Resolution level 1 iteration 4 deformation iterations 11 Did one deformation step of max. 0.091295 voxels in 3.7552 seconds minLogLikelihoodTimesPrior = 2.1286e+06 Resolution level 1 iteration 4 deformation iterations 12 Did one deformation step of max. 0.16423 voxels in 3.9483 seconds minLogLikelihoodTimesPrior = 2.1282e+06 Resolution level 1 iteration 4 deformation iterations 13 Did one deformation step of max. 0.19082 voxels in 2.1124 seconds minLogLikelihoodTimesPrior = 2.1279e+06 Resolution level 1 iteration 4 deformation iterations 14 Did one deformation step of max. 0.17987 voxels in 1.9362 seconds minLogLikelihoodTimesPrior = 2.1274e+06 Resolution level 1 iteration 4 deformation iterations 15 Did one deformation step of max. 0.19429 voxels in 1.9876 seconds minLogLikelihoodTimesPrior = 2.1264e+06 Resolution level 1 iteration 4 deformation iterations 16 Did one deformation step of max. 0.10575 voxels in 3.1478 seconds minLogLikelihoodTimesPrior = 2.1262e+06 Resolution level 1 iteration 4 deformation iterations 17 Did one deformation step of max. 0.34668 voxels in 1.9691 seconds minLogLikelihoodTimesPrior = 2.1259e+06 Resolution level 1 iteration 4 deformation iterations 18 Did one deformation step of max. 0.052554 voxels in 2.3259 seconds minLogLikelihoodTimesPrior = 2.1259e+06 Resolution level 1 iteration 4 deformation iterations 19 Did one deformation step of max. 0.021745 voxels in 1.9217 seconds minLogLikelihoodTimesPrior = 2.1258e+06 Resolution level 1 iteration 4 deformation iterations 20 Did one deformation step of max. 0.038922 voxels in 1.9517 seconds minLogLikelihoodTimesPrior = 2.1258e+06 Iteration 5 of 7 numberOfLabels: 13 Rasterizing mesh...here: 13 here2: 13 done minLogLikelihood = 2.1067e+06 minLogLikelihood = 2.1067e+06 minLogLikelihood = 2.1067e+06 EM converged! ans = 75.4834 98.4535 86.4419 36.3036 65.2124 93.8401 83.9654 82.0000 89.9773 69.2331 91.9272 73.9999 44.4055 ans = 1.0e+06 * 0.0012 0.0015 0.0075 1.0453 0.0004 0.0005 0.0015 0.0008 0.0013 0.0528 0.0004 0.0000 0.0720 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.029223 precisions[0][0][1] = 0.025509 precisions[0][0][2] = 0.011556 precisions[0][0][3] = 0.000978 precisions[0][0][4] = 0.047373 precisions[0][0][5] = 0.042678 precisions[0][0][6] = 0.026258 precisions[0][0][7] = 0.035192 precisions[0][0][8] = 0.027438 precisions[0][0][9] = 0.004351 precisions[0][0][10] = 0.051882 precisions[0][0][11] = 1.003793 precisions[0][0][12] = 0.003728 means[0][0] = 75.483376 means[0][1] = 98.453514 means[0][2] = 86.441948 means[0][3] = 36.303577 means[0][4] = 65.212387 means[0][5] = 93.840065 means[0][6] = 83.965408 means[0][7] = 81.999962 means[0][8] = 89.977325 means[0][9] = 69.233086 means[0][10] = 91.927185 means[0][11] = 73.999878 means[0][12] = 44.405479 Resolution level 1 iteration 5 deformation iterations 1 Did one deformation step of max. 0.125 voxels in 5.1403 seconds minLogLikelihoodTimesPrior = 2.1257e+06 Resolution level 1 iteration 5 deformation iterations 2 Did one deformation step of max. 0.052741 voxels in 1.9556 seconds minLogLikelihoodTimesPrior = 2.1256e+06 Resolution level 1 iteration 5 deformation iterations 3 Did one deformation step of max. 0.139 voxels in 2.0064 seconds minLogLikelihoodTimesPrior = 2.1253e+06 Resolution level 1 iteration 5 deformation iterations 4 Did one deformation step of max. 0.04667 voxels in 2.7625 seconds minLogLikelihoodTimesPrior = 2.1251e+06 Resolution level 1 iteration 5 deformation iterations 5 Did one deformation step of max. 0.073651 voxels in 1.8987 seconds minLogLikelihoodTimesPrior = 2.1248e+06 Resolution level 1 iteration 5 deformation iterations 6 Did one deformation step of max. 0.15812 voxels in 1.7903 seconds minLogLikelihoodTimesPrior = 2.1247e+06 Resolution level 1 iteration 5 deformation iterations 7 Did one deformation step of max. 0.056574 voxels in 1.9093 seconds minLogLikelihoodTimesPrior = 2.1246e+06 Resolution level 1 iteration 5 deformation iterations 8 Did one deformation step of max. 0.1032 voxels in 1.9269 seconds minLogLikelihoodTimesPrior = 2.1245e+06 Resolution level 1 iteration 5 deformation iterations 9 Did one deformation step of max. 0.068678 voxels in 1.9209 seconds minLogLikelihoodTimesPrior = 2.1243e+06 Resolution level 1 iteration 5 deformation iterations 10 Did one deformation step of max. 0.15603 voxels in 1.8791 seconds minLogLikelihoodTimesPrior = 2.1238e+06 Resolution level 1 iteration 5 deformation iterations 11 Did one deformation step of max. 0.22015 voxels in 1.8588 seconds minLogLikelihoodTimesPrior = 2.1230e+06 Resolution level 1 iteration 5 deformation iterations 12 Did one deformation step of max. 0.25011 voxels in 2.8385 seconds minLogLikelihoodTimesPrior = 2.1229e+06 Resolution level 1 iteration 5 deformation iterations 13 Did one deformation step of max. 0.18461 voxels in 1.9048 seconds minLogLikelihoodTimesPrior = 2.1228e+06 Resolution level 1 iteration 5 deformation iterations 14 Did one deformation step of max. 0.074982 voxels in 2.6995 seconds minLogLikelihoodTimesPrior = 2.1227e+06 Resolution level 1 iteration 5 deformation iterations 15 Did one deformation step of max. 0.076877 voxels in 1.9722 seconds minLogLikelihoodTimesPrior = 2.1226e+06 Resolution level 1 iteration 5 deformation iterations 16 Did one deformation step of max. 0.081789 voxels in 1.9067 seconds minLogLikelihoodTimesPrior = 2.1225e+06 Resolution level 1 iteration 5 deformation iterations 17 Did one deformation step of max. 0.17511 voxels in 2.4661 seconds minLogLikelihoodTimesPrior = 2.1224e+06 Resolution level 1 iteration 5 deformation iterations 18 Did one deformation step of max. 0.16162 voxels in 1.8765 seconds minLogLikelihoodTimesPrior = 2.1222e+06 Resolution level 1 iteration 5 deformation iterations 19 Did one deformation step of max. 0.055116 voxels in 3.8735 seconds minLogLikelihoodTimesPrior = 2.1221e+06 Resolution level 1 iteration 5 deformation iterations 20 Did one deformation step of max. 0.046713 voxels in 1.8676 seconds minLogLikelihoodTimesPrior = 2.1220e+06 Iteration 6 of 7 numberOfLabels: 13 Rasterizing mesh...here: 13 here2: 13 done minLogLikelihood = 2.1015e+06 minLogLikelihood = 2.1015e+06 minLogLikelihood = 2.1015e+06 EM converged! ans = 75.4938 98.4689 86.4763 36.2449 65.2113 93.8514 83.9669 82.0000 89.9775 68.8573 91.9179 73.9999 44.3935 ans = 1.0e+06 * 0.0011 0.0015 0.0063 1.0308 0.0004 0.0005 0.0014 0.0008 0.0013 0.0485 0.0004 0.0000 0.0710 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.029503 precisions[0][0][1] = 0.025753 precisions[0][0][2] = 0.012593 precisions[0][0][3] = 0.000985 precisions[0][0][4] = 0.048600 precisions[0][0][5] = 0.045306 precisions[0][0][6] = 0.026818 precisions[0][0][7] = 0.036023 precisions[0][0][8] = 0.027772 precisions[0][0][9] = 0.004541 precisions[0][0][10] = 0.052039 precisions[0][0][11] = 1.025966 precisions[0][0][12] = 0.003753 means[0][0] = 75.493790 means[0][1] = 98.468895 means[0][2] = 86.476257 means[0][3] = 36.244896 means[0][4] = 65.211327 means[0][5] = 93.851379 means[0][6] = 83.966919 means[0][7] = 81.999962 means[0][8] = 89.977455 means[0][9] = 68.857307 means[0][10] = 91.917892 means[0][11] = 73.999878 means[0][12] = 44.393471 Resolution level 1 iteration 6 deformation iterations 1 Did one deformation step of max. 0.25 voxels in 4.775 seconds minLogLikelihoodTimesPrior = 2.1219e+06 Resolution level 1 iteration 6 deformation iterations 2 Did one deformation step of max. 0.032899 voxels in 4.3918 seconds minLogLikelihoodTimesPrior = 2.1219e+06 Resolution level 1 iteration 6 deformation iterations 3 Did one deformation step of max. 0.0061842 voxels in 1.8309 seconds minLogLikelihoodTimesPrior = 2.1219e+06 Resolution level 1 iteration 6 deformation iterations 4 Did one deformation step of max. 0.017307 voxels in 1.846 seconds minLogLikelihoodTimesPrior = 2.1219e+06 Resolution level 1 iteration 6 deformation iterations 5 Did one deformation step of max. 0.046022 voxels in 1.8552 seconds minLogLikelihoodTimesPrior = 2.1219e+06 Resolution level 1 iteration 6 deformation iterations 6 Did one deformation step of max. 0.034305 voxels in 1.8915 seconds minLogLikelihoodTimesPrior = 2.1218e+06 Resolution level 1 iteration 6 deformation iterations 7 Did one deformation step of max. 0.079394 voxels in 1.8924 seconds minLogLikelihoodTimesPrior = 2.1218e+06 Resolution level 1 iteration 6 deformation iterations 8 Did one deformation step of max. 0.021029 voxels in 2.001 seconds minLogLikelihoodTimesPrior = 2.1218e+06 Resolution level 1 iteration 6 deformation iterations 9 Did one deformation step of max. 0.073957 voxels in 2.0031 seconds minLogLikelihoodTimesPrior = 2.1217e+06 Resolution level 1 iteration 6 deformation iterations 10 Did one deformation step of max. 0.063973 voxels in 1.9879 seconds minLogLikelihoodTimesPrior = 2.1215e+06 Resolution level 1 iteration 6 deformation iterations 11 Did one deformation step of max. 0.13448 voxels in 4.2962 seconds minLogLikelihoodTimesPrior = 2.1215e+06 Resolution level 1 iteration 6 deformation iterations 12 Did one deformation step of max. 0.064229 voxels in 2.0642 seconds minLogLikelihoodTimesPrior = 2.1214e+06 Resolution level 1 iteration 6 deformation iterations 13 Did one deformation step of max. 0.11844 voxels in 3.7529 seconds minLogLikelihoodTimesPrior = 2.1213e+06 Resolution level 1 iteration 6 deformation iterations 14 Did one deformation step of max. 0.093265 voxels in 1.9143 seconds minLogLikelihoodTimesPrior = 2.1212e+06 Resolution level 1 iteration 6 deformation iterations 15 Did one deformation step of max. 0.097815 voxels in 1.8936 seconds minLogLikelihoodTimesPrior = 2.1210e+06 Resolution level 1 iteration 6 deformation iterations 16 Did one deformation step of max. 0.088325 voxels in 1.9259 seconds minLogLikelihoodTimesPrior = 2.1206e+06 Resolution level 1 iteration 6 deformation iterations 17 Did one deformation step of max. 0.10588 voxels in 3.8626 seconds minLogLikelihoodTimesPrior = 2.1206e+06 Resolution level 1 iteration 6 deformation iterations 18 Did one deformation step of max. 0.10174 voxels in 1.9053 seconds minLogLikelihoodTimesPrior = 2.1206e+06 Resolution level 1 iteration 6 deformation iterations 19 Did one deformation step of max. 0.10606 voxels in 1.9217 seconds minLogLikelihoodTimesPrior = 2.1205e+06 Resolution level 1 iteration 6 deformation iterations 20 Did one deformation step of max. 0.080815 voxels in 1.9995 seconds minLogLikelihoodTimesPrior = 2.1203e+06 Iteration 7 of 7 numberOfLabels: 13 Rasterizing mesh...here: 13 here2: 13 done minLogLikelihood = 2.0992e+06 minLogLikelihood = 2.0992e+06 EM converged! ans = 75.4971 98.4743 86.4921 36.2231 65.2111 93.8570 83.9680 82.0000 89.9776 68.7257 91.9144 73.9999 44.3891 ans = 1.0e+06 * 0.0011 0.0015 0.0058 1.0250 0.0004 0.0005 0.0014 0.0008 0.0013 0.0470 0.0004 0.0000 0.0706 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.029608 precisions[0][0][1] = 0.025842 precisions[0][0][2] = 0.013129 precisions[0][0][3] = 0.000988 precisions[0][0][4] = 0.049065 precisions[0][0][5] = 0.046527 precisions[0][0][6] = 0.027072 precisions[0][0][7] = 0.036395 precisions[0][0][8] = 0.027913 precisions[0][0][9] = 0.004615 precisions[0][0][10] = 0.052124 precisions[0][0][11] = 1.029854 precisions[0][0][12] = 0.003763 means[0][0] = 75.497063 means[0][1] = 98.474312 means[0][2] = 86.492050 means[0][3] = 36.223095 means[0][4] = 65.211052 means[0][5] = 93.856995 means[0][6] = 83.967964 means[0][7] = 81.999962 means[0][8] = 89.977554 means[0][9] = 68.725716 means[0][10] = 91.914368 means[0][11] = 73.999878 means[0][12] = 44.389095 Resolution level 1 iteration 7 deformation iterations 1 Did one deformation step of max. 0.125 voxels in 4.5408 seconds minLogLikelihoodTimesPrior = 2.1203e+06 Resolution level 1 iteration 7 deformation iterations 2 Did one deformation step of max. 0.069629 voxels in 1.9568 seconds minLogLikelihoodTimesPrior = 2.1202e+06 Resolution level 1 iteration 7 deformation iterations 3 Did one deformation step of max. 0.14157 voxels in 1.9603 seconds minLogLikelihoodTimesPrior = 2.1202e+06 Resolution level 1 iteration 7 deformation iterations 4 Did one deformation step of max. 0.042667 voxels in 5.6821 seconds minLogLikelihoodTimesPrior = 2.1202e+06 Resolution level 1 iteration 7 deformation iterations 5 Did one deformation step of max. 0.028566 voxels in 1.9647 seconds minLogLikelihoodTimesPrior = 2.1201e+06 Resolution level 1 iteration 7 deformation iterations 6 Did one deformation step of max. 0.051515 voxels in 3.8481 seconds minLogLikelihoodTimesPrior = 2.1201e+06 Resolution level 1 iteration 7 deformation iterations 7 Did one deformation step of max. 0.028825 voxels in 1.9593 seconds minLogLikelihoodTimesPrior = 2.1201e+06 Resolution level 1 iteration 7 deformation iterations 8 Did one deformation step of max. 0.046793 voxels in 1.9634 seconds minLogLikelihoodTimesPrior = 2.1201e+06 Resolution level 1 iteration 7 deformation iterations 9 Did one deformation step of max. 0.010305 voxels in 1.9193 seconds minLogLikelihoodTimesPrior = 2.1201e+06 Resolution level 1 iteration 7 deformation iterations 10 Did one deformation step of max. 0.011454 voxels in 1.9203 seconds minLogLikelihoodTimesPrior = 2.1200e+06 Resolution level 1 iteration 7 deformation iterations 11 Did one deformation step of max. 0.023805 voxels in 1.9639 seconds minLogLikelihoodTimesPrior = 2.1199e+06 Resolution level 1 iteration 7 deformation iterations 12 Did one deformation step of max. 0.045235 voxels in 1.92 seconds minLogLikelihoodTimesPrior = 2.1197e+06 Resolution level 1 iteration 7 deformation iterations 13 Did one deformation step of max. 0.10265 voxels in 1.9007 seconds minLogLikelihoodTimesPrior = 2.1193e+06 Resolution level 1 iteration 7 deformation iterations 14 Did one deformation step of max. 0.14123 voxels in 1.8797 seconds minLogLikelihoodTimesPrior = 2.1186e+06 Resolution level 1 iteration 7 deformation iterations 15 Did one deformation step of max. 0.26165 voxels in 1.9206 seconds minLogLikelihoodTimesPrior = 2.1186e+06 Resolution level 1 iteration 7 deformation iterations 16 Did one deformation step of max. 0.14152 voxels in 1.9672 seconds minLogLikelihoodTimesPrior = 2.1185e+06 Resolution level 1 iteration 7 deformation iterations 17 Did one deformation step of max. 0.17371 voxels in 2.0162 seconds minLogLikelihoodTimesPrior = 2.1184e+06 Resolution level 1 iteration 7 deformation iterations 18 Did one deformation step of max. 0.15472 voxels in 1.8931 seconds minLogLikelihoodTimesPrior = 2.1183e+06 Resolution level 1 iteration 7 deformation iterations 19 Did one deformation step of max. 0.072127 voxels in 2.1226 seconds minLogLikelihoodTimesPrior = 2.1183e+06 Resolution level 1 iteration 7 deformation iterations 20 Did one deformation step of max. 0.0038993 voxels in 1.9188 seconds minLogLikelihoodTimesPrior = 2.1183e+06 Smoothing mesh collection with kernel size 0.750000 ...Smoothing class: 0 Smoothing class: 1 Smoothing class: 2 Smoothing class: 3 Smoothing class: 4 Smoothing class: 5 Smoothing class: 6 Smoothing class: 7 Smoothing class: 8 Smoothing class: 9 Smoothing class: 10 Smoothing class: 11 Smoothing class: 12 done numberOfImages = 1 Image: 0 Iteration 1 of 5 numberOfLabels: 13 Rasterizing mesh...here: 13 here2: 13 done minLogLikelihood = 2.0927e+06 minLogLikelihood = 2.0927e+06 minLogLikelihood = 2.0927e+06 EM converged! ans = 75.4809 98.4562 86.4346 36.4493 65.2128 93.8749 83.9698 82.0000 89.9817 68.9332 91.9220 73.9999 44.4971 ans = 1.0e+06 * 0.0012 0.0015 0.0066 1.0936 0.0004 0.0004 0.0015 0.0006 0.0013 0.0487 0.0004 0.0000 0.0739 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.029366 precisions[0][0][1] = 0.025569 precisions[0][0][2] = 0.012323 precisions[0][0][3] = 0.000956 precisions[0][0][4] = 0.049150 precisions[0][0][5] = 0.050351 precisions[0][0][6] = 0.025698 precisions[0][0][7] = 0.039580 precisions[0][0][8] = 0.028206 precisions[0][0][9] = 0.004530 precisions[0][0][10] = 0.052009 precisions[0][0][11] = 1.036479 precisions[0][0][12] = 0.003677 means[0][0] = 75.480858 means[0][1] = 98.456169 means[0][2] = 86.434631 means[0][3] = 36.449291 means[0][4] = 65.212784 means[0][5] = 93.874855 means[0][6] = 83.969810 means[0][7] = 81.999962 means[0][8] = 89.981659 means[0][9] = 68.933159 means[0][10] = 91.921989 means[0][11] = 73.999878 means[0][12] = 44.497116 Resolution level 2 iteration 1 deformation iterations 1 Did one deformation step of max. 0.0625 voxels in 7.8664 seconds minLogLikelihoodTimesPrior = 2.1145e+06 Resolution level 2 iteration 1 deformation iterations 2 Did one deformation step of max. 0.03677 voxels in 1.9392 seconds minLogLikelihoodTimesPrior = 2.1144e+06 Resolution level 2 iteration 1 deformation iterations 3 Did one deformation step of max. 0.066369 voxels in 2.2024 seconds minLogLikelihoodTimesPrior = 2.1144e+06 Resolution level 2 iteration 1 deformation iterations 4 Did one deformation step of max. 0.03102 voxels in 1.9242 seconds minLogLikelihoodTimesPrior = 2.1143e+06 Resolution level 2 iteration 1 deformation iterations 5 Did one deformation step of max. 0.0055809 voxels in 10.1441 seconds minLogLikelihoodTimesPrior = 2.1143e+06 Resolution level 2 iteration 1 deformation iterations 6 Did one deformation step of max. 0.0013053 voxels in 1.789 seconds minLogLikelihoodTimesPrior = 2.1143e+06 Resolution level 2 iteration 1 deformation iterations 7 Did one deformation step of max. 0.0097278 voxels in 1.9742 seconds minLogLikelihoodTimesPrior = 2.1143e+06 Resolution level 2 iteration 1 deformation iterations 8 Did one deformation step of max. 0.00016219 voxels in 1.8001 seconds minLogLikelihoodTimesPrior = 2.1143e+06 Resolution level 2 iteration 1 deformation iterations 9 Did one deformation step of max. 0.0032463 voxels in 1.8515 seconds minLogLikelihoodTimesPrior = 2.1143e+06 Resolution level 2 iteration 1 deformation iterations 10 Did one deformation step of max. 0.00038435 voxels in 1.8586 seconds minLogLikelihoodTimesPrior = 2.1143e+06 Resolution level 2 iteration 1 deformation iterations 11 Did one deformation step of max. 0.0010903 voxels in 1.9043 seconds minLogLikelihoodTimesPrior = 2.1143e+06 Resolution level 2 iteration 1 deformation iterations 12 Did one deformation step of max. 0.0018405 voxels in 1.7808 seconds minLogLikelihoodTimesPrior = 2.1143e+06 Resolution level 2 iteration 1 deformation iterations 13 Did one deformation step of max. 0.0037082 voxels in 1.8446 seconds minLogLikelihoodTimesPrior = 2.1143e+06 Resolution level 2 iteration 1 deformation iterations 14 Did one deformation step of max. 0.0083035 voxels in 1.8839 seconds minLogLikelihoodTimesPrior = 2.1143e+06 Resolution level 2 iteration 1 deformation iterations 15 Did one deformation step of max. 0.012354 voxels in 1.8877 seconds minLogLikelihoodTimesPrior = 2.1143e+06 Resolution level 2 iteration 1 deformation iterations 16 Did one deformation step of max. 0.015976 voxels in 1.9331 seconds minLogLikelihoodTimesPrior = 2.1143e+06 Resolution level 2 iteration 1 deformation iterations 17 Did one deformation step of max. 0.050653 voxels in 1.9672 seconds minLogLikelihoodTimesPrior = 2.1142e+06 Resolution level 2 iteration 1 deformation iterations 18 Did one deformation step of max. 0.049198 voxels in 2.0258 seconds minLogLikelihoodTimesPrior = 2.1142e+06 Resolution level 2 iteration 1 deformation iterations 19 Did one deformation step of max. 0.042232 voxels in 1.8361 seconds minLogLikelihoodTimesPrior = 2.1140e+06 Resolution level 2 iteration 1 deformation iterations 20 Did one deformation step of max. 0.12337 voxels in 1.8311 seconds minLogLikelihoodTimesPrior = 2.1137e+06 Iteration 2 of 5 numberOfLabels: 13 Rasterizing mesh...here: 13 here2: 13 done minLogLikelihood = 2.0911e+06 minLogLikelihood = 2.0911e+06 EM converged! ans = 75.4833 98.4574 86.4301 36.4396 65.2123 93.8770 83.9704 82.0000 89.9816 68.8956 91.9203 73.9999 44.4953 ans = 1.0e+06 * 0.0012 0.0015 0.0069 1.0916 0.0004 0.0004 0.0015 0.0006 0.0013 0.0484 0.0004 0.0000 0.0738 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.029421 precisions[0][0][1] = 0.025599 precisions[0][0][2] = 0.012067 precisions[0][0][3] = 0.000957 precisions[0][0][4] = 0.049297 precisions[0][0][5] = 0.051564 precisions[0][0][6] = 0.025681 precisions[0][0][7] = 0.040316 precisions[0][0][8] = 0.028249 precisions[0][0][9] = 0.004545 precisions[0][0][10] = 0.051994 precisions[0][0][11] = 1.037438 precisions[0][0][12] = 0.003681 means[0][0] = 75.483261 means[0][1] = 98.457352 means[0][2] = 86.430069 means[0][3] = 36.439602 means[0][4] = 65.212349 means[0][5] = 93.876968 means[0][6] = 83.970398 means[0][7] = 81.999962 means[0][8] = 89.981613 means[0][9] = 68.895622 means[0][10] = 91.920326 means[0][11] = 73.999878 means[0][12] = 44.495274 Resolution level 2 iteration 2 deformation iterations 1 Did one deformation step of max. 0.125 voxels in 6.4722 seconds minLogLikelihoodTimesPrior = 2.1137e+06 Resolution level 2 iteration 2 deformation iterations 2 Did one deformation step of max. 0.026153 voxels in 1.8065 seconds minLogLikelihoodTimesPrior = 2.1136e+06 Resolution level 2 iteration 2 deformation iterations 3 Did one deformation step of max. 0.049574 voxels in 1.8307 seconds minLogLikelihoodTimesPrior = 2.1135e+06 Resolution level 2 iteration 2 deformation iterations 4 Did one deformation step of max. 0.075556 voxels in 1.7945 seconds minLogLikelihoodTimesPrior = 2.1133e+06 Resolution level 2 iteration 2 deformation iterations 5 Did one deformation step of max. 0.064386 voxels in 2.014 seconds minLogLikelihoodTimesPrior = 2.1131e+06 Resolution level 2 iteration 2 deformation iterations 6 Did one deformation step of max. 0.11044 voxels in 1.8094 seconds minLogLikelihoodTimesPrior = 2.1128e+06 Resolution level 2 iteration 2 deformation iterations 7 Did one deformation step of max. 0.12251 voxels in 1.9962 seconds minLogLikelihoodTimesPrior = 2.1124e+06 Resolution level 2 iteration 2 deformation iterations 8 Did one deformation step of max. 0.1886 voxels in 1.7634 seconds minLogLikelihoodTimesPrior = 2.1119e+06 Resolution level 2 iteration 2 deformation iterations 9 Did one deformation step of max. 0.16554 voxels in 3.2499 seconds minLogLikelihoodTimesPrior = 2.1114e+06 Resolution level 2 iteration 2 deformation iterations 10 Did one deformation step of max. 0.12147 voxels in 2.3858 seconds minLogLikelihoodTimesPrior = 2.1110e+06 Resolution level 2 iteration 2 deformation iterations 11 Did one deformation step of max. 0.13927 voxels in 2.3074 seconds minLogLikelihoodTimesPrior = 2.1107e+06 Resolution level 2 iteration 2 deformation iterations 12 Did one deformation step of max. 0.20244 voxels in 1.7716 seconds minLogLikelihoodTimesPrior = 2.1103e+06 Resolution level 2 iteration 2 deformation iterations 13 Did one deformation step of max. 0.12207 voxels in 1.9997 seconds minLogLikelihoodTimesPrior = 2.1103e+06 Resolution level 2 iteration 2 deformation iterations 14 Did one deformation step of max. 0.0083651 voxels in 3.5205 seconds minLogLikelihoodTimesPrior = 2.1103e+06 Resolution level 2 iteration 2 deformation iterations 15 Did one deformation step of max. 0.0012235 voxels in 1.7712 seconds minLogLikelihoodTimesPrior = 2.1103e+06 Resolution level 2 iteration 2 deformation iterations 16 Did one deformation step of max. 0.0020878 voxels in 7.0214 seconds minLogLikelihoodTimesPrior = 2.1103e+06 Resolution level 2 iteration 2 deformation iterations 17 Did one deformation step of max. 0.00026386 voxels in 1.7917 seconds minLogLikelihoodTimesPrior = 2.1103e+06 Resolution level 2 iteration 2 deformation iterations 18 Did one deformation step of max. 0.0015363 voxels in 5.4144 seconds minLogLikelihoodTimesPrior = 2.1103e+06 Resolution level 2 iteration 2 deformation iterations 19 Did one deformation step of max. 7.9062e-05 voxels in 1.7969 seconds minLogLikelihoodTimesPrior = 2.1103e+06 Resolution level 2 iteration 2 deformation iterations 20 Did one deformation step of max. 0.00097367 voxels in 5.3547 seconds minLogLikelihoodTimesPrior = 2.1103e+06 Iteration 3 of 5 numberOfLabels: 13 Rasterizing mesh...here: 13 here2: 13 done minLogLikelihood = 2.0832e+06 minLogLikelihood = 2.0831e+06 minLogLikelihood = 2.0831e+06 EM converged! ans = 75.5015 98.4732 86.4519 36.3350 65.2087 93.8905 83.9732 82.0000 89.9800 68.5893 91.9036 73.9999 44.4577 ans = 1.0e+06 * 0.0011 0.0015 0.0066 1.0579 0.0004 0.0003 0.0014 0.0006 0.0012 0.0438 0.0004 0.0000 0.0719 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.029881 precisions[0][0][1] = 0.025900 precisions[0][0][2] = 0.012274 precisions[0][0][3] = 0.000972 precisions[0][0][4] = 0.051083 precisions[0][0][5] = 0.057455 precisions[0][0][6] = 0.026427 precisions[0][0][7] = 0.042092 precisions[0][0][8] = 0.028476 precisions[0][0][9] = 0.004778 precisions[0][0][10] = 0.051883 precisions[0][0][11] = 0.997823 precisions[0][0][12] = 0.003731 means[0][0] = 75.501534 means[0][1] = 98.473206 means[0][2] = 86.451859 means[0][3] = 36.335011 means[0][4] = 65.208740 means[0][5] = 93.890457 means[0][6] = 83.973221 means[0][7] = 81.999962 means[0][8] = 89.980034 means[0][9] = 68.589317 means[0][10] = 91.903580 means[0][11] = 73.999886 means[0][12] = 44.457706 Resolution level 2 iteration 3 deformation iterations 1 Did one deformation step of max. 0.5 voxels in 3.9925 seconds minLogLikelihoodTimesPrior = 2.1101e+06 Resolution level 2 iteration 3 deformation iterations 2 Did one deformation step of max. 0.019787 voxels in 1.7877 seconds minLogLikelihoodTimesPrior = 2.1100e+06 Resolution level 2 iteration 3 deformation iterations 3 Did one deformation step of max. 0.11008 voxels in 1.7163 seconds minLogLikelihoodTimesPrior = 2.1100e+06 Resolution level 2 iteration 3 deformation iterations 4 Did one deformation step of max. 0.04109 voxels in 1.7585 seconds minLogLikelihoodTimesPrior = 2.1099e+06 Resolution level 2 iteration 3 deformation iterations 5 Did one deformation step of max. 0.025506 voxels in 1.8208 seconds minLogLikelihoodTimesPrior = 2.1099e+06 Resolution level 2 iteration 3 deformation iterations 6 Did one deformation step of max. 0.059434 voxels in 1.8143 seconds minLogLikelihoodTimesPrior = 2.1099e+06 Resolution level 2 iteration 3 deformation iterations 7 Did one deformation step of max. 0.075792 voxels in 1.718 seconds minLogLikelihoodTimesPrior = 2.1098e+06 Resolution level 2 iteration 3 deformation iterations 8 Did one deformation step of max. 0.08013 voxels in 2.5248 seconds minLogLikelihoodTimesPrior = 2.1097e+06 Resolution level 2 iteration 3 deformation iterations 9 Did one deformation step of max. 0.080498 voxels in 1.7879 seconds minLogLikelihoodTimesPrior = 2.1096e+06 Resolution level 2 iteration 3 deformation iterations 10 Did one deformation step of max. 0.2183 voxels in 1.8108 seconds minLogLikelihoodTimesPrior = 2.1096e+06 Resolution level 2 iteration 3 deformation iterations 11 Did one deformation step of max. 0.0189 voxels in 1.7873 seconds minLogLikelihoodTimesPrior = 2.1096e+06 Resolution level 2 iteration 3 deformation iterations 12 Did one deformation step of max. 0.0037702 voxels in 1.7431 seconds minLogLikelihoodTimesPrior = 2.1096e+06 Resolution level 2 iteration 3 deformation iterations 13 Did one deformation step of max. 0.0050805 voxels in 6.9264 seconds minLogLikelihoodTimesPrior = 2.1096e+06 Resolution level 2 iteration 3 deformation iterations 14 Did one deformation step of max. 0.00072345 voxels in 1.7673 seconds minLogLikelihoodTimesPrior = 2.1096e+06 Resolution level 2 iteration 3 deformation iterations 15 Did one deformation step of max. 0.0039178 voxels in 5.1677 seconds minLogLikelihoodTimesPrior = 2.1096e+06 Resolution level 2 iteration 3 deformation iterations 16 Did one deformation step of max. 4.1835e-05 voxels in 1.7243 seconds minLogLikelihoodTimesPrior = 2.1096e+06 Resolution level 2 iteration 3 deformation iterations 17 Did one deformation step of max. 0.0012673 voxels in 3.5245 seconds minLogLikelihoodTimesPrior = 2.1096e+06 Resolution level 2 iteration 3 deformation iterations 18 Did one deformation step of max. 2.9143e-05 voxels in 1.787 seconds minLogLikelihoodTimesPrior = 2.1096e+06 Resolution level 2 iteration 3 deformation iterations 19 Did one deformation step of max. 0.00090593 voxels in 5.2788 seconds minLogLikelihoodTimesPrior = 2.1096e+06 Resolution level 2 iteration 3 deformation iterations 20 Did one deformation step of max. 3.081e-06 voxels in 1.8023 seconds minLogLikelihoodTimesPrior = 2.1096e+06 Iteration 4 of 5 numberOfLabels: 13 Rasterizing mesh...here: 13 here2: 13 done minLogLikelihood = 2.0828e+06 minLogLikelihood = 2.0828e+06 EM converged! ans = 75.5031 98.4747 86.4546 36.3303 65.2083 93.8926 83.9733 82.0000 89.9799 68.5520 91.9021 73.9999 44.4551 ans = 1.0e+06 * 0.0011 0.0015 0.0065 1.0568 0.0004 0.0003 0.0014 0.0006 0.0012 0.0432 0.0004 0.0000 0.0717 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.029919 precisions[0][0][1] = 0.025927 precisions[0][0][2] = 0.012389 precisions[0][0][3] = 0.000973 precisions[0][0][4] = 0.051577 precisions[0][0][5] = 0.058686 precisions[0][0][6] = 0.026526 precisions[0][0][7] = 0.042513 precisions[0][0][8] = 0.028510 precisions[0][0][9] = 0.004812 precisions[0][0][10] = 0.051870 precisions[0][0][11] = 0.980259 precisions[0][0][12] = 0.003735 means[0][0] = 75.503105 means[0][1] = 98.474724 means[0][2] = 86.454590 means[0][3] = 36.330273 means[0][4] = 65.208336 means[0][5] = 93.892616 means[0][6] = 83.973267 means[0][7] = 81.999962 means[0][8] = 89.979950 means[0][9] = 68.552017 means[0][10] = 91.902145 means[0][11] = 73.999886 means[0][12] = 44.455051 Resolution level 2 iteration 4 deformation iterations 1 Did one deformation step of max. 0.125 voxels in 5.7279 seconds minLogLikelihoodTimesPrior = 2.1095e+06 Resolution level 2 iteration 4 deformation iterations 2 Did one deformation step of max. 0.17273 voxels in 2.3668 seconds minLogLikelihoodTimesPrior = 2.1094e+06 Resolution level 2 iteration 4 deformation iterations 3 Did one deformation step of max. 0.072238 voxels in 3.6166 seconds minLogLikelihoodTimesPrior = 2.1093e+06 Resolution level 2 iteration 4 deformation iterations 4 Did one deformation step of max. 0.072009 voxels in 1.8319 seconds minLogLikelihoodTimesPrior = 2.1093e+06 Resolution level 2 iteration 4 deformation iterations 5 Did one deformation step of max. 0.1072 voxels in 1.7449 seconds minLogLikelihoodTimesPrior = 2.1091e+06 Resolution level 2 iteration 4 deformation iterations 6 Did one deformation step of max. 0.15178 voxels in 1.7543 seconds minLogLikelihoodTimesPrior = 2.1089e+06 Resolution level 2 iteration 4 deformation iterations 7 Did one deformation step of max. 0.20195 voxels in 1.7945 seconds minLogLikelihoodTimesPrior = 2.1086e+06 Resolution level 2 iteration 4 deformation iterations 8 Did one deformation step of max. 0.2506 voxels in 1.7681 seconds minLogLikelihoodTimesPrior = 2.1081e+06 Resolution level 2 iteration 4 deformation iterations 9 Did one deformation step of max. 0.26678 voxels in 1.9287 seconds minLogLikelihoodTimesPrior = 2.1079e+06 Resolution level 2 iteration 4 deformation iterations 10 Did one deformation step of max. 0.19059 voxels in 1.6913 seconds minLogLikelihoodTimesPrior = 2.1076e+06 Resolution level 2 iteration 4 deformation iterations 11 Did one deformation step of max. 0.071086 voxels in 2.9946 seconds minLogLikelihoodTimesPrior = 2.1075e+06 Resolution level 2 iteration 4 deformation iterations 12 Did one deformation step of max. 0.15704 voxels in 3.0997 seconds minLogLikelihoodTimesPrior = 2.1074e+06 Resolution level 2 iteration 4 deformation iterations 13 Did one deformation step of max. 0.16097 voxels in 1.7572 seconds minLogLikelihoodTimesPrior = 2.1073e+06 Resolution level 2 iteration 4 deformation iterations 14 Did one deformation step of max. 0.07647 voxels in 3.5215 seconds minLogLikelihoodTimesPrior = 2.1072e+06 Resolution level 2 iteration 4 deformation iterations 15 Did one deformation step of max. 0.080853 voxels in 1.7064 seconds minLogLikelihoodTimesPrior = 2.1072e+06 Resolution level 2 iteration 4 deformation iterations 16 Did one deformation step of max. 0.11968 voxels in 2.2875 seconds minLogLikelihoodTimesPrior = 2.1071e+06 Resolution level 2 iteration 4 deformation iterations 17 Did one deformation step of max. 0.053519 voxels in 3.4905 seconds minLogLikelihoodTimesPrior = 2.1071e+06 Resolution level 2 iteration 4 deformation iterations 18 Did one deformation step of max. 0.064766 voxels in 1.7444 seconds minLogLikelihoodTimesPrior = 2.1071e+06 Resolution level 2 iteration 4 deformation iterations 19 Did one deformation step of max. 0.047722 voxels in 1.7044 seconds minLogLikelihoodTimesPrior = 2.1070e+06 Resolution level 2 iteration 4 deformation iterations 20 Did one deformation step of max. 0.055724 voxels in 1.7736 seconds minLogLikelihoodTimesPrior = 2.1070e+06 Iteration 5 of 5 numberOfLabels: 13 Rasterizing mesh...here: 13 here2: 13 done minLogLikelihood = 2.0799e+06 minLogLikelihood = 2.0799e+06 EM converged! ans = 75.5078 98.4797 86.4608 36.3074 65.2078 93.9027 83.9760 82.0000 89.9792 68.4904 91.8949 73.9999 44.4489 ans = 1.0e+06 * 0.0011 0.0015 0.0063 1.0488 0.0004 0.0003 0.0014 0.0005 0.0012 0.0413 0.0004 0.0000 0.0712 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.030093 precisions[0][0][1] = 0.026032 precisions[0][0][2] = 0.012647 precisions[0][0][3] = 0.000976 precisions[0][0][4] = 0.052192 precisions[0][0][5] = 0.061345 precisions[0][0][6] = 0.026895 precisions[0][0][7] = 0.043167 precisions[0][0][8] = 0.028701 precisions[0][0][9] = 0.004919 precisions[0][0][10] = 0.052058 precisions[0][0][11] = 0.955238 precisions[0][0][12] = 0.003749 means[0][0] = 75.507774 means[0][1] = 98.479675 means[0][2] = 86.460846 means[0][3] = 36.307377 means[0][4] = 65.207787 means[0][5] = 93.902748 means[0][6] = 83.975967 means[0][7] = 81.999962 means[0][8] = 89.979172 means[0][9] = 68.490402 means[0][10] = 91.894882 means[0][11] = 73.999886 means[0][12] = 44.448864 Resolution level 2 iteration 5 deformation iterations 1 Did one deformation step of max. 0.0625 voxels in 5.5969 seconds minLogLikelihoodTimesPrior = 2.1069e+06 Resolution level 2 iteration 5 deformation iterations 2 Did one deformation step of max. 0.042135 voxels in 1.7393 seconds minLogLikelihoodTimesPrior = 2.1069e+06 Resolution level 2 iteration 5 deformation iterations 3 Did one deformation step of max. 0.13572 voxels in 1.7562 seconds minLogLikelihoodTimesPrior = 2.1068e+06 Resolution level 2 iteration 5 deformation iterations 4 Did one deformation step of max. 0.13887 voxels in 1.7942 seconds minLogLikelihoodTimesPrior = 2.1067e+06 Resolution level 2 iteration 5 deformation iterations 5 Did one deformation step of max. 0.061466 voxels in 2.3381 seconds minLogLikelihoodTimesPrior = 2.1066e+06 Resolution level 2 iteration 5 deformation iterations 6 Did one deformation step of max. 0.096437 voxels in 1.6952 seconds minLogLikelihoodTimesPrior = 2.1064e+06 Resolution level 2 iteration 5 deformation iterations 7 Did one deformation step of max. 0.15375 voxels in 1.7544 seconds minLogLikelihoodTimesPrior = 2.1063e+06 Resolution level 2 iteration 5 deformation iterations 8 Did one deformation step of max. 0.1506 voxels in 1.7546 seconds minLogLikelihoodTimesPrior = 2.1060e+06 Resolution level 2 iteration 5 deformation iterations 9 Did one deformation step of max. 0.24061 voxels in 1.7788 seconds minLogLikelihoodTimesPrior = 2.1059e+06 Resolution level 2 iteration 5 deformation iterations 10 Did one deformation step of max. 0.10395 voxels in 1.7042 seconds minLogLikelihoodTimesPrior = 2.1059e+06 Resolution level 2 iteration 5 deformation iterations 11 Did one deformation step of max. 0.0093166 voxels in 1.7539 seconds minLogLikelihoodTimesPrior = 2.1058e+06 Resolution level 2 iteration 5 deformation iterations 12 Did one deformation step of max. 0.061431 voxels in 1.7608 seconds minLogLikelihoodTimesPrior = 2.1058e+06 Resolution level 2 iteration 5 deformation iterations 13 Did one deformation step of max. 0.0051054 voxels in 1.7718 seconds minLogLikelihoodTimesPrior = 2.1057e+06 Resolution level 2 iteration 5 deformation iterations 14 Did one deformation step of max. 0.028663 voxels in 1.7365 seconds minLogLikelihoodTimesPrior = 2.1057e+06 Resolution level 2 iteration 5 deformation iterations 15 Did one deformation step of max. 0.01647 voxels in 1.7629 seconds minLogLikelihoodTimesPrior = 2.1057e+06 Resolution level 2 iteration 5 deformation iterations 16 Did one deformation step of max. 0.0021005 voxels in 12.8866 seconds minLogLikelihoodTimesPrior = 2.1057e+06 Resolution level 2 iteration 5 deformation iterations 17 Did one deformation step of max. 4.1822e-05 voxels in 1.7163 seconds minLogLikelihoodTimesPrior = 2.1057e+06 Resolution level 2 iteration 5 deformation iterations 18 Did one deformation step of max. 0 voxels in 24.1977 seconds minLogLikelihoodTimesPrior = 2.1057e+06 maximalDeformation is too small; stopping Smoothing mesh collection with kernel size 0.000000 ...done numberOfImages = 1 Image: 0 Iteration 1 of 3 numberOfLabels: 13 Rasterizing mesh...here: 13 here2: 13 done minLogLikelihood = 2.0767e+06 minLogLikelihood = 2.0767e+06 EM converged! ans = 75.4945 98.4735 86.4282 36.3895 65.2085 93.9126 83.9784 82.0000 89.9796 68.5662 91.8930 73.9999 44.4861 ans = 1.0e+06 * 0.0011 0.0015 0.0066 1.0690 0.0004 0.0002 0.0014 0.0005 0.0012 0.0407 0.0004 0.0000 0.0724 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.029805 precisions[0][0][1] = 0.025941 precisions[0][0][2] = 0.012293 precisions[0][0][3] = 0.000967 precisions[0][0][4] = 0.051990 precisions[0][0][5] = 0.064610 precisions[0][0][6] = 0.026652 precisions[0][0][7] = 0.044857 precisions[0][0][8] = 0.028812 precisions[0][0][9] = 0.004955 precisions[0][0][10] = 0.051963 precisions[0][0][11] = 0.924945 precisions[0][0][12] = 0.003717 means[0][0] = 75.494545 means[0][1] = 98.473549 means[0][2] = 86.428238 means[0][3] = 36.389542 means[0][4] = 65.208542 means[0][5] = 93.912636 means[0][6] = 83.978371 means[0][7] = 81.999962 means[0][8] = 89.979591 means[0][9] = 68.566193 means[0][10] = 91.892967 means[0][11] = 73.999886 means[0][12] = 44.486092 Resolution level 3 iteration 1 deformation iterations 1 Did one deformation step of max. 0.5 voxels in 3.7426 seconds minLogLikelihoodTimesPrior = 2.1045e+06 Resolution level 3 iteration 1 deformation iterations 2 Did one deformation step of max. 0.058667 voxels in 1.7727 seconds minLogLikelihoodTimesPrior = 2.1045e+06 Resolution level 3 iteration 1 deformation iterations 3 Did one deformation step of max. 0.23978 voxels in 1.7246 seconds minLogLikelihoodTimesPrior = 2.1045e+06 Resolution level 3 iteration 1 deformation iterations 4 Did one deformation step of max. 0.011483 voxels in 1.7479 seconds minLogLikelihoodTimesPrior = 2.1045e+06 Resolution level 3 iteration 1 deformation iterations 5 Did one deformation step of max. 0.0090329 voxels in 1.7434 seconds minLogLikelihoodTimesPrior = 2.1045e+06 Resolution level 3 iteration 1 deformation iterations 6 Did one deformation step of max. 0.014921 voxels in 1.7545 seconds minLogLikelihoodTimesPrior = 2.1045e+06 Resolution level 3 iteration 1 deformation iterations 7 Did one deformation step of max. 0.026025 voxels in 1.7267 seconds minLogLikelihoodTimesPrior = 2.1044e+06 Resolution level 3 iteration 1 deformation iterations 8 Did one deformation step of max. 0.061635 voxels in 1.7348 seconds minLogLikelihoodTimesPrior = 2.1044e+06 Resolution level 3 iteration 1 deformation iterations 9 Did one deformation step of max. 0.10695 voxels in 1.7499 seconds minLogLikelihoodTimesPrior = 2.1043e+06 Resolution level 3 iteration 1 deformation iterations 10 Did one deformation step of max. 0.088058 voxels in 1.8239 seconds minLogLikelihoodTimesPrior = 2.1043e+06 Resolution level 3 iteration 1 deformation iterations 11 Did one deformation step of max. 0.083838 voxels in 1.7839 seconds minLogLikelihoodTimesPrior = 2.1042e+06 Resolution level 3 iteration 1 deformation iterations 12 Did one deformation step of max. 0.10966 voxels in 3.687 seconds minLogLikelihoodTimesPrior = 2.1042e+06 Resolution level 3 iteration 1 deformation iterations 13 Did one deformation step of max. 0.01931 voxels in 1.7407 seconds minLogLikelihoodTimesPrior = 2.1042e+06 Resolution level 3 iteration 1 deformation iterations 14 Did one deformation step of max. 0.049076 voxels in 1.7844 seconds minLogLikelihoodTimesPrior = 2.1041e+06 Resolution level 3 iteration 1 deformation iterations 15 Did one deformation step of max. 0.12807 voxels in 1.7637 seconds minLogLikelihoodTimesPrior = 2.1041e+06 Resolution level 3 iteration 1 deformation iterations 16 Did one deformation step of max. 0.1029 voxels in 1.7498 seconds minLogLikelihoodTimesPrior = 2.1040e+06 Resolution level 3 iteration 1 deformation iterations 17 Did one deformation step of max. 0.15674 voxels in 1.7095 seconds minLogLikelihoodTimesPrior = 2.1039e+06 Resolution level 3 iteration 1 deformation iterations 18 Did one deformation step of max. 0.21529 voxels in 1.7449 seconds minLogLikelihoodTimesPrior = 2.1038e+06 Resolution level 3 iteration 1 deformation iterations 19 Did one deformation step of max. 0.26953 voxels in 1.6964 seconds minLogLikelihoodTimesPrior = 2.1036e+06 Resolution level 3 iteration 1 deformation iterations 20 Did one deformation step of max. 0.3155 voxels in 1.7574 seconds minLogLikelihoodTimesPrior = 2.1034e+06 Iteration 2 of 3 numberOfLabels: 13 Rasterizing mesh...here: 13 here2: 13 done minLogLikelihood = 2.0739e+06 minLogLikelihood = 2.0739e+06 EM converged! ans = 75.4988 98.4765 86.4294 36.3664 65.2080 93.9176 83.9796 82.0000 89.9787 68.5082 91.8892 73.9999 44.4755 ans = 1.0e+06 * 0.0011 0.0015 0.0067 1.0614 0.0004 0.0002 0.0014 0.0005 0.0012 0.0395 0.0004 0.0000 0.0720 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.029908 precisions[0][0][1] = 0.026010 precisions[0][0][2] = 0.012179 precisions[0][0][3] = 0.000971 precisions[0][0][4] = 0.052376 precisions[0][0][5] = 0.067565 precisions[0][0][6] = 0.026771 precisions[0][0][7] = 0.046026 precisions[0][0][8] = 0.028875 precisions[0][0][9] = 0.005033 precisions[0][0][10] = 0.052015 precisions[0][0][11] = 0.890719 precisions[0][0][12] = 0.003726 means[0][0] = 75.498756 means[0][1] = 98.476463 means[0][2] = 86.429382 means[0][3] = 36.366394 means[0][4] = 65.207970 means[0][5] = 93.917557 means[0][6] = 83.979553 means[0][7] = 81.999962 means[0][8] = 89.978668 means[0][9] = 68.508217 means[0][10] = 91.889252 means[0][11] = 73.999886 means[0][12] = 44.475521 Resolution level 3 iteration 2 deformation iterations 1 Did one deformation step of max. 0.5 voxels in 3.5567 seconds minLogLikelihoodTimesPrior = 2.1034e+06 Resolution level 3 iteration 2 deformation iterations 2 Did one deformation step of max. 0.13772 voxels in 1.7474 seconds minLogLikelihoodTimesPrior = 2.1033e+06 Resolution level 3 iteration 2 deformation iterations 3 Did one deformation step of max. 0.10427 voxels in 1.7674 seconds minLogLikelihoodTimesPrior = 2.1032e+06 Resolution level 3 iteration 2 deformation iterations 4 Did one deformation step of max. 0.1181 voxels in 1.7526 seconds minLogLikelihoodTimesPrior = 2.1032e+06 Resolution level 3 iteration 2 deformation iterations 5 Did one deformation step of max. 0.092871 voxels in 3.4785 seconds minLogLikelihoodTimesPrior = 2.1031e+06 Resolution level 3 iteration 2 deformation iterations 6 Did one deformation step of max. 0.10523 voxels in 3.403 seconds minLogLikelihoodTimesPrior = 2.1031e+06 Resolution level 3 iteration 2 deformation iterations 7 Did one deformation step of max. 0.11345 voxels in 1.7345 seconds minLogLikelihoodTimesPrior = 2.1030e+06 Resolution level 3 iteration 2 deformation iterations 8 Did one deformation step of max. 0.1243 voxels in 1.6982 seconds minLogLikelihoodTimesPrior = 2.1030e+06 Resolution level 3 iteration 2 deformation iterations 9 Did one deformation step of max. 0.077863 voxels in 1.7327 seconds minLogLikelihoodTimesPrior = 2.1029e+06 Resolution level 3 iteration 2 deformation iterations 10 Did one deformation step of max. 0.11789 voxels in 1.7529 seconds minLogLikelihoodTimesPrior = 2.1029e+06 Resolution level 3 iteration 2 deformation iterations 11 Did one deformation step of max. 0.1065 voxels in 1.76 seconds minLogLikelihoodTimesPrior = 2.1029e+06 Resolution level 3 iteration 2 deformation iterations 12 Did one deformation step of max. 0.071391 voxels in 2.3364 seconds minLogLikelihoodTimesPrior = 2.1028e+06 Resolution level 3 iteration 2 deformation iterations 13 Did one deformation step of max. 0.057173 voxels in 1.7049 seconds minLogLikelihoodTimesPrior = 2.1028e+06 Resolution level 3 iteration 2 deformation iterations 14 Did one deformation step of max. 0.12584 voxels in 1.7277 seconds minLogLikelihoodTimesPrior = 2.1027e+06 Resolution level 3 iteration 2 deformation iterations 15 Did one deformation step of max. 0.26984 voxels in 1.7528 seconds minLogLikelihoodTimesPrior = 2.1026e+06 Resolution level 3 iteration 2 deformation iterations 16 Did one deformation step of max. 0.1976 voxels in 1.7455 seconds minLogLikelihoodTimesPrior = 2.1026e+06 Resolution level 3 iteration 2 deformation iterations 17 Did one deformation step of max. 0.014938 voxels in 1.7017 seconds minLogLikelihoodTimesPrior = 2.1026e+06 Resolution level 3 iteration 2 deformation iterations 18 Did one deformation step of max. 0.040744 voxels in 3.4989 seconds minLogLikelihoodTimesPrior = 2.1026e+06 Resolution level 3 iteration 2 deformation iterations 19 Did one deformation step of max. 0.0084554 voxels in 1.7446 seconds minLogLikelihoodTimesPrior = 2.1025e+06 Resolution level 3 iteration 2 deformation iterations 20 Did one deformation step of max. 0.0081282 voxels in 1.751 seconds minLogLikelihoodTimesPrior = 2.1025e+06 Iteration 3 of 3 numberOfLabels: 13 Rasterizing mesh...here: 13 here2: 13 done minLogLikelihood = 2.0729e+06 minLogLikelihood = 2.0729e+06 EM converged! ans = 75.5020 98.4779 86.4274 36.3536 65.2078 93.9214 83.9804 82.0000 89.9783 68.4868 91.8863 73.9999 44.4693 ans = 1.0e+06 * 0.0011 0.0015 0.0068 1.0563 0.0004 0.0002 0.0014 0.0005 0.0012 0.0386 0.0004 0.0000 0.0717 numberOfClasses = 13 numberOfImages = 1 precisions[0][0][0] = 0.030003 precisions[0][0][1] = 0.026047 precisions[0][0][2] = 0.012153 precisions[0][0][3] = 0.000973 precisions[0][0][4] = 0.052764 precisions[0][0][5] = 0.070329 precisions[0][0][6] = 0.026925 precisions[0][0][7] = 0.046704 precisions[0][0][8] = 0.028936 precisions[0][0][9] = 0.005089 precisions[0][0][10] = 0.052086 precisions[0][0][11] = 0.860219 precisions[0][0][12] = 0.003734 means[0][0] = 75.502052 means[0][1] = 98.477905 means[0][2] = 86.427383 means[0][3] = 36.353607 means[0][4] = 65.207787 means[0][5] = 93.921417 means[0][6] = 83.980423 means[0][7] = 81.999962 means[0][8] = 89.978310 means[0][9] = 68.486847 means[0][10] = 91.886269 means[0][11] = 73.999886 means[0][12] = 44.469292 Resolution level 3 iteration 3 deformation iterations 1 Did one deformation step of max. 0.25 voxels in 4.1525 seconds minLogLikelihoodTimesPrior = 2.1024e+06 Resolution level 3 iteration 3 deformation iterations 2 Did one deformation step of max. 0.36008 voxels in 1.7353 seconds minLogLikelihoodTimesPrior = 2.1024e+06 Resolution level 3 iteration 3 deformation iterations 3 Did one deformation step of max. 0.014279 voxels in 1.7117 seconds minLogLikelihoodTimesPrior = 2.1024e+06 Resolution level 3 iteration 3 deformation iterations 4 Did one deformation step of max. 0.0237 voxels in 1.7891 seconds minLogLikelihoodTimesPrior = 2.1024e+06 Resolution level 3 iteration 3 deformation iterations 5 Did one deformation step of max. 0.045806 voxels in 1.7194 seconds minLogLikelihoodTimesPrior = 2.1024e+06 Resolution level 3 iteration 3 deformation iterations 6 Did one deformation step of max. 0.053763 voxels in 1.7282 seconds minLogLikelihoodTimesPrior = 2.1024e+06 Resolution level 3 iteration 3 deformation iterations 7 Did one deformation step of max. 0.083353 voxels in 1.7342 seconds minLogLikelihoodTimesPrior = 2.1023e+06 Resolution level 3 iteration 3 deformation iterations 8 Did one deformation step of max. 0.22242 voxels in 1.7241 seconds minLogLikelihoodTimesPrior = 2.1023e+06 Resolution level 3 iteration 3 deformation iterations 9 Did one deformation step of max. 0.015279 voxels in 7.6752 seconds minLogLikelihoodTimesPrior = 2.1023e+06 Resolution level 3 iteration 3 deformation iterations 10 Did one deformation step of max. 0.003072 voxels in 1.8078 seconds minLogLikelihoodTimesPrior = 2.1023e+06 Resolution level 3 iteration 3 deformation iterations 11 Did one deformation step of max. 5.5555e-05 voxels in 19.2815 seconds minLogLikelihoodTimesPrior = 2.1023e+06 Resolution level 3 iteration 3 deformation iterations 12 Did one deformation step of max. 3.9648e-05 voxels in 1.7685 seconds minLogLikelihoodTimesPrior = 2.1023e+06 Resolution level 3 iteration 3 deformation iterations 13 Did one deformation step of max. 3.866e-05 voxels in 5.291 seconds minLogLikelihoodTimesPrior = 2.1023e+06 Resolution level 3 iteration 3 deformation iterations 14 Did one deformation step of max. 4.0761e-05 voxels in 1.7513 seconds minLogLikelihoodTimesPrior = 2.1023e+06 Resolution level 3 iteration 3 deformation iterations 15 Did one deformation step of max. 6.7671e-05 voxels in 3.4716 seconds minLogLikelihoodTimesPrior = 2.1023e+06 Resolution level 3 iteration 3 deformation iterations 16 Did one deformation step of max. 0 voxels in 10.4297 seconds minLogLikelihoodTimesPrior = 2.1023e+06 maximalDeformation is too small; stopping Fitting mesh to image data mask took 948.5498 seconds numberOfLabels: 25 Rasterizing mesh...here: 25 here2: 25 done Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points Transforming points I am WriteImage and I'm running! Wrote image to file image.mgz Constructing image-to-world transform from header information (asmr1.mgz) Returning the following transform: AffineTransform (0x7f2b4e0bb190) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 342263322 Debug: Off Object Name: Observers: none Matrix: -0.33333 0 0 0 0 0.33333 0 -0.33333 0 Offset: [58.5661, -36.1663, 21.1664] Center: [0, 0, 0] Translation: [58.5661, -36.1663, 21.1664] Inverse: -3.00003 0 0 0 0 -3.00003 0 3.00003 0 Singular: 0 Constructing image-to-world transform from header information (/home/gustav/Desktop/preprocessing_h70/bert/tmp/hippoSF_T1_v10_right/imageDump.mgz) Returning the following transform: AffineTransform (0x7f2b4e0bb190) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 342269111 Debug: Off Object Name: Observers: none Matrix: -0.309221 0.00925259 -0.0837584 -0.0337264 0.229969 0.214595 0.0253332 -0.109568 0.238449 Offset: [52.9678, -35.5968, -6.60806] Center: [0, 0, 0] Translation: [52.9678, -35.5968, -6.60806] Inverse: -3.27491 -0.291382 -0.888125 -0.563388 2.99331 -2.89177 0.0890539 1.40639 2.95935 Singular: 0 Transform before cropping: AffineTransform (0x7f2b4e0bb190) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 342269113 Debug: Off Object Name: Observers: none Matrix: 0.927672 -0.0277581 0.251278 -0.0760004 0.328707 -0.715353 -0.10118 0.689913 0.643792 Offset: [16.795, 83.3242, 1.70848] Center: [0, 0, 0] Translation: [16.795, 83.3242, 1.70848] Inverse: 1.09163 0.296039 -0.0971263 0.187794 0.963914 0.99776 -0.0296843 -0.986441 0.468793 Singular: 0 WorldToImageTransform before cropping: AffineTransform (0x7f2b4e101fb0) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 342269115 Debug: Off Object Name: Observers: none Matrix: -3.00003 0 0 0 0 -3.00003 0 3.00003 0 Offset: [175.7, 63.4998, 108.5] Center: [0, 0, 0] Translation: [175.7, 63.4998, 108.5] Inverse: -0.33333 0 0 0 0 0.33333 0 -0.33333 0 Singular: 0 m_BoundingBoxSize: [131, 241,99] minimalMappedCoordinate: [10.1331, 3.3395,-11.4449] maximalMappedCoordinate: [162.018, 162.214,230.379] Cropping with min [-5 -13 -35] and max [178 179 255] m_OriginalImageRegion before checking margins: ImageRegion (0x7f2b4e20f368) Dimension: 3 Index: [-5, -13, -35] Size: [184, 193, 291] m_CroppedImageRegion before checking margins: ImageRegion (0x7f2b4e20f330) Dimension: 3 Index: [0, 0, 0] Size: [184, 193, 291] m_OriginalImageRegion after checking margins: ImageRegion (0x7f2b4e20f368) Dimension: 3 Index: [0, 0, 0] Size: [175, 172, 214] m_CroppedImageRegion after checking margins: ImageRegion (0x7f2b4e20f330) Dimension: 3 Index: [5, 13, 35] Size: [175, 172, 214] Transform after cropping: AffineTransform (0x7f2b4e0bb190) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 342274904 Debug: Off Object Name: Observers: none Matrix: 0.927672 -0.0277581 0.251278 -0.0760004 0.328707 -0.715353 -0.10118 0.689913 0.643792 Offset: [21.795, 96.3242, 36.7085] Center: [0, 0, 0] Translation: [21.795, 96.3242, 36.7085] Inverse: 1.09163 0.296039 -0.0971263 0.187794 0.963914 0.99776 -0.0296843 -0.986441 0.468793 Singular: 0 WorldToImageTransform after cropping: AffineTransform (0x7f2b4e101fb0) RTTI typeinfo: itk::AffineTransform Reference Count: 1 Modified Time: 342274905 Debug: Off Object Name: Observers: none Matrix: -3.00003 0 0 0 0 -3.00003 0 3.00003 0 Offset: [180.7, 76.4998, 143.5] Center: [0, 0, 0] Translation: [180.7, 76.4998, 143.5] Inverse: -0.33333 0 0 0 0 0.33333 0 -0.33333 0 Singular: 0 I am WriteImage and I'm running! Wrote image to file asmr2.mgz This file does not contain MRI parameters This file does not contain MRI parameters numberOfLabels: 25 Rasterizing mesh...here: 25 here2: 25 done mri_convert.bin discreteLabels.mgz discreteLabelsResampledT1.mgz -rt nearest -odt float -rl /home/gustav/Desktop/preprocessing_h70/bert/mri/norm.mgz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from discreteLabels.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) reading template info from volume /home/gustav/Desktop/preprocessing_h70/bert/mri/norm.mgz... Reslicing using nearest writing to discreteLabelsResampledT1.mgz... mv: cannot stat 'volumesAmygdala.txt': No such file or directory Everything done! It took 1305.6951 seconds