Hi Paul, are you using version 6? Is this happening on more than one
subject or is this subject an outlier?

On 05/19/2017 10:28 AM, Bruce Fischl wrote:
> Hi Paul
>
> you need to look at the rh.orig.nofix and rh.inflated.nofix. Typically
> something big is wrong like skull attached to brain or something
>
> cheers
> Bruce
>
>
> On Fri, 19 May 2017, miracle ozzoude wrote:
>
>> Hello Freesurfer expert, While running recon-all on one of my
>> subjects, the
>> pipeline got stuck during the "fix topology rh" stage for almost
>> 12hrs. How
>> do I diagnosis the problem and fix it? I have attached the recon-all.log
>> file. Thank you
>> Best,
>> Paul
>>
>>
>
>

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