Hello dear all,
I use Freesurfer-Samseg for
MS lesion segmentation(cross-sectional).
I use the T1 and Flair for this. (just these are inputs) I registered flair and t1 to DIR for every patient.
(My
manual lesion masks are on DIR imaging.) I controlled the registrations
At the beginning i didnt change initial threshold of run_samseg. (default value)
I created a binary lesion mask using different threshold.
threshold 0.1= dice 0,604
threshold 0.05= dice 0.611
threshold 0.001 = dice 0.599
Do you have any recommendations to increase the dice? It seems that with this way It can't go up about 0.6
Best,
Dilek