On Dec 15, 2022, at 11:46 AM, Douglas N. Greve <dgreve@mgh.harvard.edu> wrote:

[CAUTION: Non-UBC Email]

I recently found a bug in the pial placement refinement with FLAIR
images (recon-all -flair ...) that affects version 7.{0,1,2,3}. This bug
caused the pial surfaces to not extend nearly far enough. It has been
fixed in the development version of FS and so will be in future
versions. If you want to access the fix before then, create a
$SUBJECTS_DIR/global-expert-options.txt with this line

PlaceMMPialSurf --mm_min_inside 50 --mm_max_inside 200 --mm_min_outside
10 --mm_max_outside 50

sorry for any inconvenience
doug


_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed.  If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline <https://www.massgeneralbrigham.org/complianceline> .
Please note that this e-mail is not secure (encrypted).  If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately.  Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.