Please remember to post to the FS list ...

That will not work because the AAL atlas is not in the same space. I think the AAL is in colin27 space, so download colin27, run recon-all, and then map the labels to the surface.

On 11/15/2020 9:11 AM, Stephan Wunderlich wrote:

        External Email - Use Caution        

Thanks a lot for your reply.

I was guessing that, but didn’t know how to tell the recon-all command to use the AAL Atlas. And if I can just download the AAlv3 Atlas (MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://www.gin.cnrs.fr/en/tools/aal/) and put that folder into the freesurfer/average folder.

Cheers,