hi Martin, I just tried this and it resulted in errors/ Do I not have to specify a flag for the baseid or for each subject, eg -s?

What I did (according to your suggestion)

recon-all -long XXX_1.long XXX_2.long -localGI

This did not work? Do you know why potentially?

On Wed, Mar 26, 2014 at 3:28 PM, Martin Reuter <mreuter@nmr.mgh.harvard.edu> wrote:

Hi Anna,

no, you would still do:

recon-all -long tpid baseid -localGI

just not use the '-all'.

Best, Martin

On 03/26/2014 11:12 AM, Anna Jonsson wrote:

thank you. But if the lnog process has already been done and these induviduals already have long directories so to speak, I would just put the lgi flag on as normal but just replace the subject name with the long subject name eg ?

recon-all -s XXXX_long -localGI

Thank you

On Sat, Mar 15, 2014 at 2:07 PM, Martin Reuter <mreuter@nmr.mgh.harvard.edu> wrote:

Hi Anna,

for the image processing, you just add the lgi flag to the regular longitudinal recon-all command

recon-all -long ……     -lgi

for the analysis after that you use the long directories.

Best, Martin

On Mar 15, 2014, at 10:04 AM, Anna Jonsson <ajonsson09@gmail.com> wrote:

Dear group,

If I want conduct gyrification analyses on the long runs that have been through the longitudinal stream, do I just perform the "normal" baseline command on the .long data?

thank you,

kind wishes

Anna

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Dr. Martin Reuter

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