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Hello together,

Could you please suggest the most effective way (in terms of time) for computation of statistics on segmented volumes from .nii source file?

So far I went though the following steps:

recon-all -autorecon1 -no-isrunning -subjid test
recon-all -gcareg -no-isrunning -subjid test
recon-all -canorm -no-isrunning -subjid test

And seem to be stuck on -careg as transforms/talairach.m3z is needed to proceed.

As far as I can tell — there is no way around recon-all -careg which seems to be the most time consuming in the chain of invocations based on Step-wise Directives (https://surfer.nmr.mgh.harvard.edu/fswiki/recon-all).

But I might be wrong and hoping for your expertise here.

Many thanks,

Aleksandr Erokhin.