My data is on the desktop. The subjects directory is under usr/local/freesurfer/subjects.
I tried setting desktop as SUBJECTS_DIR by using 'export SUBJECTS_DIR="/Desktop/Allimages/MRIscan... and the full path till DICOM" ' but apparently it didn't work because when I tried to run recon, it says
SUBJECTS_DIR /Desktop/Allimages/MRIscan/.../....DICOM does not exist
If I can't get SUBJECTS_DIR to change to Desktop path, how can I introduce my data into usr/local/freesurfer path?
I notice Bert has everything in order. If I mkdir Mine in SUBJECTS_DIR and put my MRI files in there , will it work?