External Email - Use Caution        

Hi, 

Thank you for your help! 

I have little prior knowledge using freesurfer can I confirm which is probably a silly question - that when adding thr -cw256 to the command line it will look like this: 

recon-all -subject subjectname -i invol1 <-i invol2> -all -cw256

Kindest regards, 
Ellie 

On Thu, 8 Sep 2022 at 2:50 am, Douglas N. Greve <dgreve@mgh.harvard.edu> wrote:
Yes, some of the commands inside recon-all do not support a field of view over 256mm, which yours apparently is. I keep meaning to fix this, but we only see it once a year or so and I forget. In any event, just add -cw256 to the command line.

On 9/6/2022 10:51 PM, Ellie Shaw wrote:

        External Email - Use Caution        

Hi there, 

I am attempting to perform the recon-all command for my T1 nii file.

When I run the recon-all command I get the following error message: 

ERROR! FOV=288.000 > 256
Include the flag -cw256 with recon-all!
Inspect orig.mgz to ensure the head is fully visible.

I am seeking some support to overcome this issue - I understand this would include the flag -cw256.

Freesurfer version: freesurfer-darwin-macOS-7.2.0-20210713-aa8f76b
Platform: OSX 7.2.0
Recon-all.log file attached below

Thank you in advance!

Kind regards, 
Ellie


_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed.  If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://www.massgeneralbrigham.org/complianceline <MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://www.massgeneralbrigham.org/complianceline> .
Please note that this e-mail is not secure (encrypted).  If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately.  Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.