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Which version of FreeSurfer is this and did you do some OS upgrade in between?

Matt.

From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Shachar Gal <gal.shachar@gmail.com>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Sunday, December 23, 2018 at 8:24 AM
To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] mpr2mni305 failed, during recon-all

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hello,

I'm running the hcp's FreeSurfer pipeline, and for some reason, after working successfully several times, on different subjects, im getting this error:

***

/Users/georgieboy/Research/Piano/test/222/222/mri

\n mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale --i orig.mgz --o orig_nu.mgz \n

\n talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm \n

ERROR: mpr2mni305 failed, see transforms/talairach_avi.log

Darwin medical613-6.tau.ac.il 18.2.0 Darwin Kernel Version 18.2.0: Fri Oct  5 19:41:49 PDT 2018; root:xnu-4903.221.2~2/RELEASE_X86_64 x86_64

recon-all -s 222 exited with ERRORS at Sun Dec 23 15:50:23 IST 2018

***

the information in the talairach_avi.log is as follows:

***

dyld: Symbol not found: ___keymgr_global

  Referenced from: /Applications/freesurfer/bin/gauss_4dfp

  Expected in: /usr/lib/libSystem.B.dylib

 in /Applications/freesurfer/bin/gauss_4dfp

Abort

ERROR: 'gauss_4dfp talsrcimg 1.1' failed! status=134

ERROR: mpr2mni305 execution aborted

***

to be clear, this -  /usr/lib/libSystem.B.dylib exists exactly where is was expected...

the input image, orig.mgz, looks fine and is in 1 mm res...

so im having trouble getting to the bottom of the error.

thanks in advance,

Shachar

 

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