We've been manually editing brainmask.mgz to remove voxels that are included in the pial surface that shouldn't be, and recently found on the wiki that to remove cerebellum voxels we should be editing brain.finalsurfs.manedit.mgz instead. What is the reason for this difference? Do we need to redo edits that we've done only on brainmask.mgz? We are going to be looking at cortical thickness.

Thanks,

Jordan Pierce
Graduate Student
Behavioral and Brain Sciences Program
Psychology Department
The University of Georgia