External Email - Use Caution
On Apr 23, 2021, at 1:28 PM, Iglesias Gonzalez, Juan E. <JIGLESIASGONZALEZ@mgh.harvard.edu> wrote:Shouldn’t it be segmentHA_T1.sh 01 instead of segmentHA_T1.sh sub-01 ? Juan Eugenio IglesiasSenior research fellowCMIC (UCL), MGH (HMS) and CSAIL (MIT)MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be http://www.jeiglesias.com From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Wei Shao <wshao@research.baycrest.org>Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>Date: Friday, April 23, 2021 at 12:04To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>Subject: Re: [Freesurfer] Hippocampus segmentHA_T1.sh External Email - Use Caution Hi, E [weishao@gra-login1 01]$ find . -name "talairach.xfm"./mri/transforms/talairach.xfm module load freesurfer/7.1.0export SUBJECTS_DIR=/home/weishao/scratch/BARTsegmentHA_T1.sh sub-01Best,Wei On Fri, Apr 23, 2021 at 11:35 AM Iglesias Gonzalez, Juan E. <JIGLESIASGONZALEZ@mgh.harvard.edu> wrote:I’m assuming transforms/talairach.xfm is in there?Also: what was the exact command you ran?Cheers,/E Juan Eugenio IglesiasSenior research fellowCMIC (UCL), MGH (HMS) and CSAIL (MIT)MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be http://www.jeiglesias.com From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Wei Shao <wshao@research.baycrest.org>Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>Date: Friday, April 23, 2021 at 11:05To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>Subject: [Freesurfer] Hippocampus segmentHA_T1.sh External Email - Use Caution Hello, Dear FreeSurfer expert I tried to use segmentHA_T1.sh for the hippocampus subfields, However, here is the logcannot find the wmparc.mgz or norm.mgz or talairach.xfm for the subject.Has the subject been procesed with recon-all? But the wmparc.mgz and norm.mgz are there <image001.png> Could you tell me how to fix this? Thanks! Best,Wei _______________________________________________Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduMailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurferThe information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to behttp://www.massgeneralbrigham.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail._______________________________________________Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduMailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurferThe information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be http://www.massgeneralbrigham.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
module load freesurfer/7.1.0export SUBJECTS_DIR=/home/weishao/scratch/BARTsegmentHA_T1.sh sub-01
I’m assuming transforms/talairach.xfm is in there?Also: what was the exact command you ran?Cheers,/E Juan Eugenio IglesiasSenior research fellowCMIC (UCL), MGH (HMS) and CSAIL (MIT)MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be http://www.jeiglesias.com From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Wei Shao <wshao@research.baycrest.org>Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>Date: Friday, April 23, 2021 at 11:05To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>Subject: [Freesurfer] Hippocampus segmentHA_T1.sh External Email - Use Caution Hello, Dear FreeSurfer expert I tried to use segmentHA_T1.sh for the hippocampus subfields, However, here is the logcannot find the wmparc.mgz or norm.mgz or talairach.xfm for the subject.Has the subject been procesed with recon-all? But the wmparc.mgz and norm.mgz are there <image001.png> Could you tell me how to fix this? Thanks! Best,Wei _______________________________________________Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduMailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurferThe information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to behttp://www.massgeneralbrigham.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.