Hi Kelly,

This might have to do with SIP being enabled, which blocks libraries stored in /usr. I would suggest disabling SIP and rerunning to see if that fixes things:
http://osxdaily.com/2015/10/05/disable-rootless-system-integrity-protection-mac-os-x/

best,
Andrew

On Nov 27, 2017, at 6:33 PM, Kelly Martin <kcm81@georgetown.edu> wrote:

Hi all,

I have Freesurfer version freesurfer-i386-apple-darwin11.4.2-stable6-20170119 installed on my MacOS Sierra 10.12.5 environment, and am experiencing similar library issues to what others have reported. I have tried previously offered suggestions to update and test MacPorts, as well as $ sudo -E fs_update. I am trying to run a Connectome Workbench command, but the errors I am receiving involve incompatibilities with the Freesurfer libraries. I was however able to run recon-all without a problem. Does anyone have a recommendation on how to proceed?

This is the error:

dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address

  Referenced from: /Users/username/Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib

  Expected in: /usr/lib/libSystem.B.dylib

Thank you,

Kelly

--

Kelly Martin

Graduate Student

Interdisciplinary Program in Neuroscience

Georgetown University

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.