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Hi Douglas, 

Thank you very much for your answer! 

What would you suggest is therefore the best way to do this in V7? 

Best wishes, 
Marion D

 

 

 

Le 2021-04-06 15:18, Douglas N. Greve a écrit :

The "-make" functionality does not work in V7. We should have disabled that flag

On 4/2/2021 3:41 AM, Marion DURTESTE wrote:

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Dear FreeSurfer developers,

When running recon-all -make all after correcting a few errors from the recon-all output, it exits with an error. This occurs when the mris_label2annot command is called. 

Loading /Users/mariondurteste/Documents/PhD/FreeSurfer/ReconstructedAfterQC/ToDo/ALA076_1/surf/lh.orig
1 1376057 FG1
2 16711935 FG2
ERROR: lh.FG2.mpm.vpnl.label, n=580, vertex 119494 out of range

If we rerun the -make all command a second time it then finishes without errors. Do you know why this is ? 

• FREESURFER version: freesurfer-darwin-macOS-7.1.1-20200811-8b40551
• Platform: macOS BigSur 11.2.2

Thanks for your help ! 
Marion D

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