I have preprocessed my data using Freesurfer v5.2. I have checked the the recon-all.log for each subject to make sure that the process completed without error and that all the appropriate files were created. I have also visually inspected each image. However, when I run recon checker (from freesurfer QA tools) I receive the following error for all of my subjects: 'actual file order disagrees with common file order'. Is this a bug or do I need to re-run the preprocessing again from scratch? If I need to re-run, is there a way to ensure that this won't happen again? 

Kind regards,

Sinead
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