I’m assuming transforms/talairach.xfm is in there?
Also: what was the exact command you ran?
Cheers,
/E
Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Wei Shao <wshao@research.baycrest.org>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Friday, April 23, 2021 at 11:05
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Hippocampus segmentHA_T1.sh
External Email - Use Caution
Hello, Dear FreeSurfer expert
I tried to use segmentHA_T1.sh for the hippocampus subfields, However, here is the log
cannot find the wmparc.mgz or norm.mgz or talairach.xfm for the subject.
Has the subject been procesed with recon-all?
But the wmparc.mgz and norm.mgz are there
Could you tell me how to fix this? Thanks!
Best,
Wei