Thanks for the tip! I hope that diff2anatorig.bbr.mat looks fine, however, because that one in particular comes from bbregister. Perhaps this glitch affected later steps.
Sorry to hear. Do the other registration files in the dmri/xmfs/ directory, including diff2anatorig.bbr.mat, look like this too?
From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu > on behalf of John Davis <jdavis@mrn.org>
Sent: Thursday, February 15, 2018 4:47:39 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] Difficulties running traculaJohnThank you for helpingAnastasia,I tried your solution.
"setenv LC_NUMERIC en_US.UTF-8" in the shell start up files.
Unfortunately, it didn't work. I did it from both a tcsh and a bash shell. (local reasons for trying that). Neither worked. The outcome was identical, but I can send the files in again if you need.
On Wed, Feb 14, 2018 at 2:20 PM, Yendiki, Anastasia <AYENDIKI@mgh.harvard.edu> wrote:
Hi John – The problem is the funky format of the numbers in that registration file. It expects a 4x4 matrix of regular decimal numbers. Are the numbers in all the other registration files in the xfms/ directory in this same format? It probably has something to do with how your unix environment variables are set. Try "setenv LC_NUMERIC en_US.UTF-8”. Does this change the output?
Best,a.y
From: <freesurfer-bounces@nmr.mgh.harvard.edu > on behalf of John Davis <jdavis@mrn.org>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu >
Date: Monday, February 12, 2018 at 11:20 AM
To: "freesurfer@nmr.mgh.harvard.edu " <freesurfer@nmr.mgh.harvard.edu >
Subject: [Freesurfer] Difficulties running tracula
The information you request is in the attachments. Also I sent dmrirc.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
--
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/ freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.