Fri Sep 29 12:07:05 IST 2017 /home/repair/Desktop/tracula_config_files /home/repair/freesurfer/bin/trac-all -prep -c PT9.config Subject PT9 SUBJECTS_DIR /home/repair/freesurfer/subjects/ FREESURFER_HOME /home/repair/freesurfer Actual FREESURFER_HOME /home/repair/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-dev-20170915- repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 806992 2823412 229224 4249844 6521648 Swap: 0 0 0 ######################################## Program versions: $Id: trac-all,v 1.61 2016/12/18 14:01:27 ayendiki Exp $ mri_convert.bin --all-info ProgramName: mri_convert.bin ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-06:37:05-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ $Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-06:37:06-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-06:37:06-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-06:37:06-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-06:37:06-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-06:37:06-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-06:37:06-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 New invocation of trac-preproc repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 808924 2794888 229248 4276436 6519380 Swap: 0 0 0 #------------------------------------- /home/repair/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Fri Sep 29 12:07:06 IST 2017 mri_convert --bvec-voxel /home/repair/Desktop/ICMR_DTI//PT9/dti.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_orig.nii.gz mri_convert.bin --bvec-voxel /home/repair/Desktop/ICMR_DTI//PT9/dti.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_orig.nii.gz $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ reading from /home/repair/Desktop/ICMR_DTI//PT9/dti.nii.gz... TR=3125.72, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.998232, 0.0543188, 0.0241128) j_ras = (0.051725, 0.993883, -0.0975782) k_ras = (0.0292656, 0.0961585, 0.994936) writing to /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_orig.nii.gz... cp /home/repair/Desktop/ICMR_DTI/PT9/dti.bvec /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_orig.bvecs cp /home/repair/Desktop/ICMR_DTI/PT9/dti.bval /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_orig.bvals mv -f /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvecs.tmp /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_orig.bvecs mv -f /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvals.tmp /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_orig.bvals orientLAS /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_orig.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_orig_las.nii.gz INFO: input image orientation is LAS INFO: input image determinant is -15.3125 mri_convert -oni 128 -onj 128 -onk 27 -oid -0.998232 0.0543188 0.0241128 -ojd 0.051725 0.993883 -0.0975782 -okd 0.0292656 0.0961585 0.994936 -oc 4.21956 -15.855 -23.3074 -rt nearest /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_orig.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_orig_las.nii.gz mri_convert.bin -oni 128 -onj 128 -onk 27 -oid -0.998232 0.0543188 0.0241128 -ojd 0.051725 0.993883 -0.0975782 -okd 0.0292656 0.0961585 0.994936 -oc 4.21956 -15.855 -23.3074 -rt nearest /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_orig.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_orig_las.nii.gz normalizing out_i_direction: (-0.998232, 0.0543188, 0.0241128) -> (-0.998232, 0.0543188, 0.0241128) normalizing out_j_direction: (0.051725, 0.993883, -0.0975782) -> (0.051725, 0.993883, -0.0975782) normalizing out_k_direction: (0.0292656, 0.0961585, 0.994936) -> (0.0292656, 0.0961585, 0.994936) $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ reading from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_orig.nii.gz... TR=3125.72, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.998232, 0.0543188, 0.0241128) j_ras = (0.051725, 0.993883, -0.0975782) k_ras = (0.0292656, 0.0961585, 0.994936) Reslicing using nearest writing to /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_orig_las.nii.gz... INFO: found /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_orig.bvals, copying INFO: found /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_orig.bvecs, converting to LAS mv -f /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_orig_las.bvecs /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvecs mv -f /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_orig_las.bvals /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvals eddy_correct /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_orig_las.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi.nii.gz 0 processing /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_tmp0000 processing /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_tmp0001 processing /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_tmp0002 processing /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_tmp0003 processing /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_tmp0004 processing /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_tmp0005 processing /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_tmp0006 processing /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_tmp0007 processing /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_tmp0008 processing /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_tmp0009 processing /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_tmp0010 processing /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_tmp0011 processing /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_tmp0012 processing /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_tmp0013 processing /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_tmp0014 processing /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_tmp0015 processing /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_tmp0016 processing /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_tmp0017 processing /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_tmp0018 processing /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_tmp0019 processing /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_tmp0020 processing /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_tmp0021 processing /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_tmp0022 processing /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_tmp0023 processing /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_tmp0024 processing /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_tmp0025 processing /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_tmp0026 processing /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_tmp0027 processing /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_tmp0028 processing /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_tmp0029 processing /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_tmp0030 processing /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_tmp0031 processing /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_tmp0032 mv -f /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvecs /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvecs.norot xfmrot /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi.ecclog /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvecs.norot /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvecs ln -sf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/data.nii.gz mri_convert --frame 0 /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/lowb.nii.gz mri_convert.bin --frame 0 /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/lowb.nii.gz $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ reading from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.998232, 0.0543188, 0.0241128) j_ras = (0.051725, 0.993883, -0.0975782) k_ras = (0.0292656, 0.0961585, 0.994936) keeping frame 0 writing to /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/lowb.nii.gz... mri_concat --i /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/lowb.nii.gz --mean --o /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/lowb.nii.gz ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Computing mean across frames Writing to /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/lowb.nii.gz bet /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/lowb.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/lowb_brain.nii.gz -m -f 0.5 mv -f /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/lowb_brain_mask.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff #------------------------------------- #@# Image quality assessment Fri Sep 29 12:15:08 IST 2017 /home/repair/freesurfer/bin/dmri_motion --dwi /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_orig.nii.gz --mat /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi.ecclog --bval /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvals --T 194571.468750 --out /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_motion.txt cwd /home/repair/Desktop/tracula_config_files cmdline /home/repair/freesurfer/bin/dmri_motion --dwi /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_orig.nii.gz --mat /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi.ecclog --bval /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvals --T 194571.468750 --out /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_motion.txt sysname Linux hostname Radiology machine x86_64 user repair Output motion measure file: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_motion.txt Input transform file: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi.ecclog Input DWI file: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_orig.nii.gz Input b-value table: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvals Low-b image intensity threshold: 194571 Nominal diffusivity: 0.001 Loading volume-to-baseline affine transformations Computing between-volume head motion measures INFO: Processed transforms for 33 volumes Loading DWI volume series from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_orig.nii.gz Loading b-value table from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvals Computing within-volume head motion measures Done in 0.953 sec. dmri_motion done #------------------------------------- #@# Intra-subject registration Fri Sep 29 12:15:09 IST 2017 mri_convert /home/repair/freesurfer/subjects//PT9/mri/brain.mgz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/brain_anat_orig.nii.gz mri_convert.bin /home/repair/freesurfer/subjects//PT9/mri/brain.mgz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ reading from /home/repair/freesurfer/subjects//PT9/mri/brain.mgz... TR=8.40, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 3.14321e-09, -2.32831e-10) j_ras = (0, 0, -1) k_ras = (-3.14321e-09, 1, 0) writing to /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/brain_anat_orig.nii.gz... orientLAS /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/brain_anat_orig.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 3.14321e-09 -2.32831e-10 -ojd -3.14321e-09 1 0 -okd 0 0 1 -oc 6.64474 -13.1372 -26.7577 -rt nearest /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/brain_anat_orig.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/brain_anat.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 3.14321e-09 -2.32831e-10 -ojd -3.14321e-09 1 0 -okd 0 0 1 -oc 6.64474 -13.1372 -26.7577 -rt nearest /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/brain_anat_orig.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/brain_anat.nii.gz $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ reading from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/brain_anat_orig.nii.gz... TR=8.40, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 3.14321e-09, -2.32831e-10) j_ras = (0, 0, -1) k_ras = (-3.14321e-09, 1, 0) Reslicing using nearest writing to /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/brain_anat.nii.gz... tkregister2 --mov /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/brain_anat_orig.nii.gz --targ /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/anatorig2anat.mat --reg /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/anat2anatorig.dat tkregister_tcl /home/repair/freesurfer/tktools/tkregister2.tcl target volume /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/brain_anat.nii.gz movable volume /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/brain_anat_orig.nii.gz reg file /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.133 2016/08/02 21:17:11 greve Exp $ Diagnostic Level -1 INFO: loading target /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; INFO: loading movable /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 -0.00005; -0.00000 -0.00000 1.00000 1.00002; 0.00000 0.00000 0.00000 1.00000; --------------------------------------- ---- Input registration matrix -------- 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 -0.00005; -0.00000 -0.00000 1.00000 1.00002; 0.00000 0.00000 0.00000 1.00000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.00000 0.00000 -0.00000 0.00000; 0.00000 0.00000 -1.00000 -0.00005; 0.00000 1.00000 0.00000 1.00002; 0.00000 0.00000 0.00000 1.00000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/anat2anatorig.mat -inverse /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/anatorig2anat.mat #------------------------------------- #@# Inter-subject registration Fri Sep 29 12:15:13 IST 2017 flirt -in /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/brain_anat.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/brain_anat_mni.nii.gz -omat /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/anat2mni.mat -cost mutualinfo convert_xfm -omat /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/mni2anat.mat -inverse /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/anat2mni.mat convert_xfm -omat /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/anatorig2mni.mat -concat /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/anat2mni.mat /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/anatorig2anat.mat convert_xfm -omat /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/mni2anatorig.mat -inverse /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/anatorig2mni.mat #------------------------------------- #@# Masks Fri Sep 29 12:17:20 IST 2017 mri_binarize --i /home/repair/freesurfer/subjects//PT9/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/White-Matter.nii.gz $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $ cwd /home/repair/Desktop/tracula_config_files cmdline mri_binarize.bin --i /home/repair/freesurfer/subjects//PT9/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/White-Matter.nii.gz sysname Linux hostname Radiology machine x86_64 user repair input /home/repair/freesurfer/subjects//PT9/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/White-Matter.nii.gz Binarizing based on matching values nMatch 5 0 2 1 7 2 41 3 46 4 77 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 430962 values in range Counting number of voxels in first frame Found 430961 voxels in final mask Count: 430961 430961.000000 16777216 2.568728 mri_binarize done mri_binarize --i /home/repair/freesurfer/subjects//PT9/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/White-Matter++.nii.gz $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $ cwd /home/repair/Desktop/tracula_config_files cmdline mri_binarize.bin --i /home/repair/freesurfer/subjects//PT9/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/White-Matter++.nii.gz sysname Linux hostname Radiology machine x86_64 user repair input /home/repair/freesurfer/subjects//PT9/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/White-Matter++.nii.gz Binarizing based on matching values nMatch 8 0 2 1 7 2 41 3 46 4 77 5 28 6 60 7 16 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 456193 values in range Counting number of voxels in first frame Found 456192 voxels in final mask Count: 456192 456192.000000 16777216 2.719116 mri_binarize done mri_binarize --i /home/repair/freesurfer/subjects//PT9/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/notventricles.nii.gz $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $ cwd /home/repair/Desktop/tracula_config_files cmdline mri_binarize.bin --i /home/repair/freesurfer/subjects//PT9/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/notventricles.nii.gz sysname Linux hostname Radiology machine x86_64 user repair input /home/repair/freesurfer/subjects//PT9/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/notventricles.nii.gz Binarizing based on matching values nMatch 2 0 4 1 43 binval 0 binvalnot 1 fstart = 0, fend = 0, nframes = 1 Found 7431 values in range Counting number of voxels in first frame Found 7430 voxels in final mask Count: 7430 7430.000000 16777216 0.044286 mri_binarize done mri_aparc2aseg --s PT9 --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/aparc+aseg+2mm.nii.gz SUBJECTS_DIR /home/repair/freesurfer/subjects/ subject PT9 outvol /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/aparc+aseg+2mm.nii.gz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 2.000000 RipUnknown 0 Reading lh white surface /home/repair/freesurfer/subjects//PT9/surf/lh.white Reading lh pial surface /home/repair/freesurfer/subjects//PT9/surf/lh.pial Loading lh annotations from /home/repair/freesurfer/subjects//PT9/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Building hash of lh white Building hash of lh pial Reading rh white surface /home/repair/freesurfer/subjects//PT9/surf/rh.white Reading rh pial surface /home/repair/freesurfer/subjects//PT9/surf/rh.pial Loading rh annotations from /home/repair/freesurfer/subjects//PT9/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Have color table for rh white annotation Building hash of rh white Building hash of rh pial Loading ribbon segmentation from /home/repair/freesurfer/subjects//PT9/mri/ribbon.mgz Loading filled from /home/repair/freesurfer/subjects//PT9/mri/ribbon.mgz Loading aseg from /home/repair/freesurfer/subjects//PT9/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; ------------------------- Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 996196 Used brute-force search on 0 voxels Fixing Parahip LH WM Found 4 clusters 0 k 1.000000 1 k 2.000000 2 k 1.000000 3 k 892.000000 Fixing Parahip RH WM Found 2 clusters 0 k 2.000000 1 k 606.000000 Writing output aseg to /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/aparc+aseg+2mm.nii.gz mri_binarize --i /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/cortex.nii.gz $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $ cwd /home/repair/Desktop/tracula_config_files cmdline mri_binarize.bin --i /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/cortex.nii.gz sysname Linux hostname Radiology machine x86_64 user repair input /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/cortex.nii.gz Binarizing based on threshold min 1000 max 2999 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 587867 values in range Counting number of voxels in first frame Found 587866 voxels in final mask Count: 587866 587866.000000 16777216 3.503954 mri_binarize done mri_binarize --i /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/cortex+2mm.nii.gz $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $ cwd /home/repair/Desktop/tracula_config_files cmdline mri_binarize.bin --i /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/cortex+2mm.nii.gz sysname Linux hostname Radiology machine x86_64 user repair input /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/cortex+2mm.nii.gz Binarizing based on threshold min 1000 max 4999 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 862957 values in range Counting number of voxels in first frame Found 862956 voxels in final mask Count: 862956 862956.000000 16777216 5.143619 mri_binarize done mri_binarize --i /home/repair/freesurfer/subjects//PT9/mri/aparc+aseg.mgz --match 16 --o /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/Brain-Stem.nii.gz $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $ cwd /home/repair/Desktop/tracula_config_files cmdline mri_binarize.bin --i /home/repair/freesurfer/subjects//PT9/mri/aparc+aseg.mgz --match 16 --o /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/Brain-Stem.nii.gz sysname Linux hostname Radiology machine x86_64 user repair input /home/repair/freesurfer/subjects//PT9/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/Brain-Stem.nii.gz Binarizing based on matching values nMatch 1 0 16 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 17410 values in range Counting number of voxels in first frame Found 17409 voxels in final mask Count: 17409 17409.000000 16777216 0.103766 mri_binarize done fslmaths /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/cortex+2mm.nii.gz -add /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/Brain-Stem.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/cortex+2mm+bs.nii.gz mri_convert /home/repair/freesurfer/subjects//PT9/mri/brainmask.mgz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/anat_brain_mask.nii.gz mri_convert.bin /home/repair/freesurfer/subjects//PT9/mri/brainmask.mgz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/anat_brain_mask.nii.gz $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ reading from /home/repair/freesurfer/subjects//PT9/mri/brainmask.mgz... TR=8.40, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 3.14321e-09, -2.32831e-10) j_ras = (0, 0, -1) k_ras = (-3.14321e-09, 1, 0) writing to /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/anat_brain_mask.nii.gz... fslmaths /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/anat_brain_mask.nii.gz -mul /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/notventricles.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/anat_brain_mask-vent.nii.gz mri_convert /home/repair/freesurfer/subjects//PT9/mri/aparc+aseg.mgz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/aparc+aseg.nii.gz mri_convert.bin /home/repair/freesurfer/subjects//PT9/mri/aparc+aseg.mgz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/aparc+aseg.nii.gz $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ reading from /home/repair/freesurfer/subjects//PT9/mri/aparc+aseg.mgz... TR=8.40, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 3.14321e-09, -2.32831e-10) j_ras = (0, 0, -1) k_ras = (-3.14321e-09, 1, 0) writing to /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/aparc+aseg.nii.gz... fslmaths /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/aparc+aseg.nii.gz -dilM -bin /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/aparc+aseg_mask.nii.gz orientLAS /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/White-Matter.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/White-Matter.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 3.14321e-09 -2.32831e-10 -ojd -3.14321e-09 1 0 -okd 0 0 1 -oc 6.64474 -13.1372 -26.7577 -rt nearest /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/White-Matter.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/White-Matter.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 3.14321e-09 -2.32831e-10 -ojd -3.14321e-09 1 0 -okd 0 0 1 -oc 6.64474 -13.1372 -26.7577 -rt nearest /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/White-Matter.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/White-Matter.nii.gz $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ reading from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/White-Matter.nii.gz... TR=8.40, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 3.14321e-09, -2.32831e-10) j_ras = (0, 0, -1) k_ras = (-3.14321e-09, 1, 0) Reslicing using nearest writing to /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/White-Matter.nii.gz... flirt -in /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/White-Matter.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/White-Matter.nii.gz -applyxfm -init /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/White-Matter++.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/White-Matter++.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 3.14321e-09 -2.32831e-10 -ojd -3.14321e-09 1 0 -okd 0 0 1 -oc 6.64474 -13.1372 -26.7577 -rt nearest /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/White-Matter++.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/White-Matter++.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 3.14321e-09 -2.32831e-10 -ojd -3.14321e-09 1 0 -okd 0 0 1 -oc 6.64474 -13.1372 -26.7577 -rt nearest /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/White-Matter++.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/White-Matter++.nii.gz $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ reading from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/White-Matter++.nii.gz... TR=8.40, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 3.14321e-09, -2.32831e-10) j_ras = (0, 0, -1) k_ras = (-3.14321e-09, 1, 0) Reslicing using nearest writing to /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/White-Matter++.nii.gz... flirt -in /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/White-Matter++.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/White-Matter++.nii.gz -applyxfm -init /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/notventricles.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/notventricles.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 3.14321e-09 -2.32831e-10 -ojd -3.14321e-09 1 0 -okd 0 0 1 -oc 6.64474 -13.1372 -26.7577 -rt nearest /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/notventricles.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/notventricles.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 3.14321e-09 -2.32831e-10 -ojd -3.14321e-09 1 0 -okd 0 0 1 -oc 6.64474 -13.1372 -26.7577 -rt nearest /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/notventricles.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/notventricles.nii.gz $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ reading from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/notventricles.nii.gz... TR=8.40, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 3.14321e-09, -2.32831e-10) j_ras = (0, 0, -1) k_ras = (-3.14321e-09, 1, 0) Reslicing using nearest writing to /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/notventricles.nii.gz... flirt -in /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/notventricles.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/notventricles.nii.gz -applyxfm -init /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/cortex.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/cortex.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 3.14321e-09 -2.32831e-10 -ojd -3.14321e-09 1 0 -okd 0 0 1 -oc 6.64474 -13.1372 -26.7577 -rt nearest /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/cortex.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/cortex.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 3.14321e-09 -2.32831e-10 -ojd -3.14321e-09 1 0 -okd 0 0 1 -oc 6.64474 -13.1372 -26.7577 -rt nearest /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/cortex.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/cortex.nii.gz $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ reading from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/cortex.nii.gz... TR=8.40, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 3.14321e-09, -2.32831e-10) j_ras = (0, 0, -1) k_ras = (-3.14321e-09, 1, 0) Reslicing using nearest writing to /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/cortex.nii.gz... flirt -in /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/cortex.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/cortex.nii.gz -applyxfm -init /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/cortex+2mm.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/cortex+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 3.14321e-09 -2.32831e-10 -ojd -3.14321e-09 1 0 -okd 0 0 1 -oc 6.64474 -13.1372 -26.7577 -rt nearest /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/cortex+2mm.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/cortex+2mm.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 3.14321e-09 -2.32831e-10 -ojd -3.14321e-09 1 0 -okd 0 0 1 -oc 6.64474 -13.1372 -26.7577 -rt nearest /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/cortex+2mm.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/cortex+2mm.nii.gz $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ reading from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/cortex+2mm.nii.gz... TR=8.40, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 3.14321e-09, -2.32831e-10) j_ras = (0, 0, -1) k_ras = (-3.14321e-09, 1, 0) Reslicing using nearest writing to /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/cortex+2mm.nii.gz... flirt -in /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/cortex+2mm.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/cortex+2mm.nii.gz -applyxfm -init /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/cortex+2mm+bs.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/cortex+2mm+bs.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 3.14321e-09 -2.32831e-10 -ojd -3.14321e-09 1 0 -okd 0 0 1 -oc 6.64474 -13.1372 -26.7577 -rt nearest /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/cortex+2mm+bs.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/cortex+2mm+bs.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 3.14321e-09 -2.32831e-10 -ojd -3.14321e-09 1 0 -okd 0 0 1 -oc 6.64474 -13.1372 -26.7577 -rt nearest /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/cortex+2mm+bs.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/cortex+2mm+bs.nii.gz $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ reading from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/cortex+2mm+bs.nii.gz... TR=8.40, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 3.14321e-09, -2.32831e-10) j_ras = (0, 0, -1) k_ras = (-3.14321e-09, 1, 0) Reslicing using nearest writing to /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/cortex+2mm+bs.nii.gz... flirt -in /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/cortex+2mm+bs.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/cortex+2mm+bs.nii.gz -applyxfm -init /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/aparc+aseg.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/aparc+aseg.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 3.14321e-09 -2.32831e-10 -ojd -3.14321e-09 1 0 -okd 0 0 1 -oc 6.64474 -13.1372 -26.7577 -rt nearest /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/aparc+aseg.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/aparc+aseg.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 3.14321e-09 -2.32831e-10 -ojd -3.14321e-09 1 0 -okd 0 0 1 -oc 6.64474 -13.1372 -26.7577 -rt nearest /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/aparc+aseg.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/aparc+aseg.nii.gz $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ reading from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/aparc+aseg.nii.gz... TR=8.40, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 3.14321e-09, -2.32831e-10) j_ras = (0, 0, -1) k_ras = (-3.14321e-09, 1, 0) Reslicing using nearest writing to /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/aparc+aseg.nii.gz... flirt -in /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/aparc+aseg.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/aparc+aseg.nii.gz -applyxfm -init /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/aparc+aseg+2mm.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/aparc+aseg+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 3.14321e-09 -2.32831e-10 -ojd -3.14321e-09 1 0 -okd 0 0 1 -oc 6.64474 -13.1372 -26.7577 -rt nearest /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/aparc+aseg+2mm.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/aparc+aseg+2mm.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 3.14321e-09 -2.32831e-10 -ojd -3.14321e-09 1 0 -okd 0 0 1 -oc 6.64474 -13.1372 -26.7577 -rt nearest /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/aparc+aseg+2mm.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/aparc+aseg+2mm.nii.gz $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ reading from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/aparc+aseg+2mm.nii.gz... TR=8.40, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 3.14321e-09, -2.32831e-10) j_ras = (0, 0, -1) k_ras = (-3.14321e-09, 1, 0) Reslicing using nearest writing to /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/aparc+aseg+2mm.nii.gz... flirt -in /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/aparc+aseg+2mm.nii.gz -applyxfm -init /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/aparc+aseg_mask.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/aparc+aseg_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 3.14321e-09 -2.32831e-10 -ojd -3.14321e-09 1 0 -okd 0 0 1 -oc 6.64474 -13.1372 -26.7577 -rt nearest /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/aparc+aseg_mask.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/aparc+aseg_mask.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 3.14321e-09 -2.32831e-10 -ojd -3.14321e-09 1 0 -okd 0 0 1 -oc 6.64474 -13.1372 -26.7577 -rt nearest /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/aparc+aseg_mask.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/aparc+aseg_mask.nii.gz $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ reading from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/aparc+aseg_mask.nii.gz... TR=8.40, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 3.14321e-09, -2.32831e-10) j_ras = (0, 0, -1) k_ras = (-3.14321e-09, 1, 0) Reslicing using nearest writing to /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/aparc+aseg_mask.nii.gz... flirt -in /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/aparc+aseg_mask.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/aparc+aseg_mask.nii.gz -applyxfm -init /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/anat_brain_mask.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/anat_brain_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 3.14321e-09 -2.32831e-10 -ojd -3.14321e-09 1 0 -okd 0 0 1 -oc 6.64474 -13.1372 -26.7577 -rt nearest /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/anat_brain_mask.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/anat_brain_mask.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 3.14321e-09 -2.32831e-10 -ojd -3.14321e-09 1 0 -okd 0 0 1 -oc 6.64474 -13.1372 -26.7577 -rt nearest /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/anat_brain_mask.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/anat_brain_mask.nii.gz $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ reading from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/anat_brain_mask.nii.gz... TR=8.40, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 3.14321e-09, -2.32831e-10) j_ras = (0, 0, -1) k_ras = (-3.14321e-09, 1, 0) Reslicing using nearest writing to /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/anat_brain_mask.nii.gz... flirt -in /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/anat_brain_mask.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/anat_brain_mask.nii.gz -applyxfm -init /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/anat_brain_mask-vent.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/anat_brain_mask-vent.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 3.14321e-09 -2.32831e-10 -ojd -3.14321e-09 1 0 -okd 0 0 1 -oc 6.64474 -13.1372 -26.7577 -rt nearest /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/anat_brain_mask-vent.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/anat_brain_mask-vent.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 3.14321e-09 -2.32831e-10 -ojd -3.14321e-09 1 0 -okd 0 0 1 -oc 6.64474 -13.1372 -26.7577 -rt nearest /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/anat_brain_mask-vent.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/anat_brain_mask-vent.nii.gz $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ reading from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anatorig/anat_brain_mask-vent.nii.gz... TR=8.40, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 3.14321e-09, -2.32831e-10) j_ras = (0, 0, -1) k_ras = (-3.14321e-09, 1, 0) Reslicing using nearest writing to /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/anat_brain_mask-vent.nii.gz... flirt -in /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz -out /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/anat_brain_mask-vent.nii.gz -applyxfm -init /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/anat2mni.mat -interp nearestneighbour fslstats -t /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi.nii.gz -k /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/White-Matter++.flt.nii.gz -m -s | awk '{print $1/$2}' > /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi_snr.txt Image Exception : #22 :: ERROR: Could not open image /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/White-Matter++.flt ln -sf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lowb_brain_mask.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/nodif_brain_mask.nii.gz #------------------------------------- #@# Tensor fit Fri Sep 29 12:24:05 IST 2017 dtifit -k /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi.nii.gz -m /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lowb_brain_mask.nii.gz -r /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvecs -b /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvals -o /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dtifit 0 128 0 128 0 27 0 slices processed 1 slices processed 2 slices processed 3 slices processed 4 slices processed 5 slices processed 6 slices processed 7 slices processed 8 slices processed 9 slices processed 10 slices processed 11 slices processed 12 slices processed 13 slices processed 14 slices processed 15 slices processed 16 slices processed 17 slices processed 18 slices processed 19 slices processed 20 slices processed 21 slices processed 22 slices processed 23 slices processed 24 slices processed 25 slices processed 26 slices processed #------------------------------------- #@# Priors Fri Sep 29 12:24:09 IST 2017 #------------------------------------- trac-preproc finished without error at Fri Sep 29 12:24:09 IST 2017 New invocation of trac-all Fri Sep 29 12:24:52 IST 2017 /home/repair/Desktop/tracula_config_files /home/repair/freesurfer/bin/trac-all -bedp -c PT9.config Subject PT9 SUBJECTS_DIR /home/repair/freesurfer/subjects/ FREESURFER_HOME /home/repair/freesurfer Actual FREESURFER_HOME /home/repair/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-dev-20170915- repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 1154448 2444836 265348 4280964 6136824 Swap: 0 0 0 ######################################## Program versions: $Id: trac-all,v 1.61 2016/12/18 14:01:27 ayendiki Exp $ mri_convert.bin --all-info ProgramName: mri_convert.bin ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-06:54:52-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ $Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-06:54:52-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-06:54:52-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-06:54:52-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-06:54:52-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-06:54:52-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-06:54:52-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 WARN: Running bedbostx locally - this might take a while WARN: It is recommended to run this step on a cluster bedpostx_mgh -n 2 /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri /home/repair/freesurfer/bin/bedpostx_mgh: 131: /home/repair/freesurfer/bin/bedpostx_mgh: Syntax error: "(" unexpected New invocation of trac-all Fri Sep 29 12:25:50 IST 2017 /home/repair/Desktop/tracula_config_files /home/repair/freesurfer/bin/trac-all -bedp -c PT9.config Subject PT9 SUBJECTS_DIR /home/repair/freesurfer/subjects/ FREESURFER_HOME /home/repair/freesurfer Actual FREESURFER_HOME /home/repair/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-dev-20170915- repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 1218644 2373668 271152 4287936 6066768 Swap: 0 0 0 ######################################## Program versions: $Id: trac-all,v 1.61 2016/12/18 14:01:27 ayendiki Exp $ mri_convert.bin --all-info ProgramName: mri_convert.bin ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-06:55:50-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ $Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-06:55:50-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-06:55:50-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-06:55:50-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-06:55:50-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-06:55:50-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-06:55:50-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 WARN: Running bedbostx locally - this might take a while WARN: It is recommended to run this step on a cluster bedpostx_mgh -n 2 /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri /home/repair/freesurfer/bin/bedpostx_mgh: 131: /home/repair/freesurfer/bin/bedpostx_mgh: Syntax error: "(" unexpected New invocation of trac-all Fri Sep 29 12:38:31 IST 2017 /home/repair/Desktop/tracula_config_files /home/repair/freesurfer/bin/trac-all -bedp -c PT9.config Subject PT9 SUBJECTS_DIR /home/repair/freesurfer/subjects/ FREESURFER_HOME /home/repair/freesurfer Actual FREESURFER_HOME /home/repair/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-dev-20170915- repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 1546624 2013012 292820 4320612 5716308 Swap: 0 0 0 ######################################## Program versions: $Id: trac-all,v 1.61 2016/12/18 14:01:27 ayendiki Exp $ mri_convert.bin --all-info ProgramName: mri_convert.bin ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:08:31-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ $Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:08:31-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:08:31-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:08:31-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:08:31-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:08:31-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:08:31-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 WARN: Running bedbostx locally - this might take a while WARN: It is recommended to run this step on a cluster bedpostx_mgh -n 2 /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri /home/repair/freesurfer/bin/bedpostx_mgh: 131: /home/repair/freesurfer/bin/bedpostx_mgh: Syntax error: "(" unexpected New invocation of trac-all Fri Sep 29 12:39:31 IST 2017 /home/repair/Desktop/tracula_config_files /home/repair/freesurfer/bin/trac-all -bedp -c PT9.config Subject PT9 SUBJECTS_DIR /home/repair/freesurfer/subjects/ FREESURFER_HOME /home/repair/freesurfer Actual FREESURFER_HOME /home/repair/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-dev-20170915- repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 2042972 1528632 280956 4308644 5231952 Swap: 0 0 0 ######################################## Program versions: $Id: trac-all,v 1.61 2016/12/18 14:01:27 ayendiki Exp $ mri_convert.bin --all-info ProgramName: mri_convert.bin ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:09:31-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ $Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:09:31-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:09:31-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:09:31-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:09:31-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:09:31-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:09:31-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 WARN: Running bedbostx locally - this might take a while WARN: It is recommended to run this step on a cluster bedpostx_mgh -n 2 /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri /home/repair/freesurfer/bin/bedpostx_mgh: 131: /home/repair/freesurfer/bin/bedpostx_mgh: Syntax error: "(" unexpected New invocation of trac-all Fri Sep 29 12:40:30 IST 2017 /home/repair/Desktop/tracula_config_files /home/repair/freesurfer/bin/trac-all -bedp -c PT9.config Subject PT9 SUBJECTS_DIR /home/repair/freesurfer/subjects/ FREESURFER_HOME /home/repair/freesurfer Actual FREESURFER_HOME /home/repair/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-dev-20170915- repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 1460584 2117004 274500 4302660 5820640 Swap: 0 0 0 ######################################## Program versions: $Id: trac-all,v 1.61 2016/12/18 14:01:27 ayendiki Exp $ mri_convert.bin --all-info ProgramName: mri_convert.bin ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:10:30-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ $Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:10:30-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:10:30-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:10:30-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:10:30-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:10:30-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:10:30-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 WARN: Running bedbostx locally - this might take a while WARN: It is recommended to run this step on a cluster bedpostx_mgh -n 2 /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri /home/repair/freesurfer/bin/bedpostx_mgh: 131: /home/repair/freesurfer/bin/bedpostx_mgh: Syntax error: "(" unexpected New invocation of trac-all Fri Sep 29 12:41:08 IST 2017 /home/repair/Desktop/tracula_config_files /home/repair/freesurfer/bin/trac-all -bedp -c PT9.config Subject PT9 SUBJECTS_DIR /home/repair/freesurfer/subjects/ FREESURFER_HOME /home/repair/freesurfer Actual FREESURFER_HOME /home/repair/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-dev-20170915- repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 1507944 2060412 283776 4311892 5764116 Swap: 0 0 0 ######################################## Program versions: $Id: trac-all,v 1.61 2016/12/18 14:01:27 ayendiki Exp $ mri_convert.bin --all-info ProgramName: mri_convert.bin ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:11:08-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ $Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:11:08-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:11:08-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:11:08-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:11:08-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:11:08-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:11:08-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 WARN: Running bedbostx locally - this might take a while WARN: It is recommended to run this step on a cluster bedpostx_mgh -n 2 /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri /home/repair/freesurfer/bin/bedpostx_mgh: 131: /home/repair/freesurfer/bin/bedpostx_mgh: Syntax error: "(" unexpected New invocation of trac-all Fri Sep 29 12:41:53 IST 2017 /home/repair/Desktop/tracula_config_files /home/repair/freesurfer/bin/trac-all -bedp -c PT9.config Subject PT9 SUBJECTS_DIR /home/repair/freesurfer/subjects/ FREESURFER_HOME /home/repair/freesurfer Actual FREESURFER_HOME /home/repair/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-dev-20170915- repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 1541452 2023372 287248 4315424 5727140 Swap: 0 0 0 ######################################## Program versions: $Id: trac-all,v 1.61 2016/12/18 14:01:27 ayendiki Exp $ mri_convert.bin --all-info ProgramName: mri_convert.bin ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:11:53-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ $Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:11:53-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:11:53-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:11:53-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:11:53-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:11:53-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:11:53-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 WARN: Running bedbostx locally - this might take a while WARN: It is recommended to run this step on a cluster bedpostx_mgh -n 2 /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri /home/repair/freesurfer/bin/bedpostx_mgh: line 131: syntax error near unexpected token `(' /home/repair/freesurfer/bin/bedpostx_mgh: line 131: `fslver= (`cat $FSLDIR/etc/fslversion | sed 's/\./ /g'`)' New invocation of trac-all Fri Sep 29 12:44:58 IST 2017 /home/repair/Desktop/tracula_config_files /home/repair/freesurfer/bin/trac-all -bedp -c PT9.config Subject PT9 SUBJECTS_DIR /home/repair/freesurfer/subjects/ FREESURFER_HOME /home/repair/freesurfer Actual FREESURFER_HOME /home/repair/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-dev-20170915- repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 1638508 1936788 276160 4304952 5641064 Swap: 0 0 0 ######################################## Program versions: $Id: trac-all,v 1.61 2016/12/18 14:01:27 ayendiki Exp $ mri_convert.bin --all-info ProgramName: mri_convert.bin ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:14:58-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ $Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:14:58-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:14:58-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:14:58-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:14:58-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:14:58-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:14:58-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 WARN: Running bedbostx locally - this might take a while WARN: It is recommended to run this step on a cluster bedpostx_mgh -n 2 /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri /home/repair/freesurfer/bin/bedpostx_mgh: 131: /home/repair/freesurfer/bin/bedpostx_mgh: Syntax error: "(" unexpected New invocation of trac-all Fri Sep 29 12:46:09 IST 2017 /home/repair/Desktop/tracula_config_files /home/repair/freesurfer/bin/trac-all -bedp -c PT9.config Subject PT9 SUBJECTS_DIR /home/repair/freesurfer/subjects/ FREESURFER_HOME /home/repair/freesurfer Actual FREESURFER_HOME /home/repair/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-dev-20170915- repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 1663852 1895176 292448 4321220 5599392 Swap: 0 0 0 ######################################## Program versions: $Id: trac-all,v 1.61 2016/12/18 14:01:27 ayendiki Exp $ mri_convert.bin --all-info ProgramName: mri_convert.bin ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:16:09-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ $Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:16:09-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:16:09-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:16:09-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:16:09-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:16:09-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:16:09-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 WARN: Running bedbostx locally - this might take a while WARN: It is recommended to run this step on a cluster bedpostx_mgh -n 2 /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri /home/repair/freesurfer/bin/bedpostx_mgh: 131: /home/repair/freesurfer/bin/bedpostx_mgh: 5: not found /home/repair/freesurfer/bin/bedpostx_mgh: 132: /home/repair/freesurfer/bin/bedpostx_mgh: Bad substitution New invocation of trac-all Fri Sep 29 12:46:56 IST 2017 /home/repair/Desktop/tracula_config_files /home/repair/freesurfer/bin/trac-all -bedp -c PT9.config Subject PT9 SUBJECTS_DIR /home/repair/freesurfer/subjects/ FREESURFER_HOME /home/repair/freesurfer Actual FREESURFER_HOME /home/repair/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-dev-20170915- repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 1664156 1902636 284644 4313456 5606888 Swap: 0 0 0 ######################################## Program versions: $Id: trac-all,v 1.61 2016/12/18 14:01:27 ayendiki Exp $ mri_convert.bin --all-info ProgramName: mri_convert.bin ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:16:57-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ $Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:16:57-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:16:57-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:16:57-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:16:57-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:16:57-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:16:57-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 WARN: Running bedbostx locally - this might take a while WARN: It is recommended to run this step on a cluster bedpostx_mgh -n 2 /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri /home/repair/freesurfer/bin/bedpostx_mgh: 131: /home/repair/freesurfer/bin/bedpostx_mgh: Syntax error: "(" unexpected New invocation of trac-all Fri Sep 29 12:50:23 IST 2017 /home/repair/Desktop/tracula_config_files /home/repair/freesurfer/bin/trac-all -bedp -c PT9.config Subject PT9 SUBJECTS_DIR /home/repair/freesurfer/subjects/ FREESURFER_HOME /home/repair/freesurfer Actual FREESURFER_HOME /home/repair/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-dev-20170915- repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 1704680 1858716 287652 4316852 5563324 Swap: 0 0 0 ######################################## Program versions: $Id: trac-all,v 1.61 2016/12/18 14:01:27 ayendiki Exp $ mri_convert.bin --all-info ProgramName: mri_convert.bin ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:20:23-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ $Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:20:23-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:20:23-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:20:23-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:20:23-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:20:23-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:20:23-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 WARN: Running bedbostx locally - this might take a while WARN: It is recommended to run this step on a cluster bedpostx_mgh -n 2 /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri BPDIR=/home/repair/freesurfer/bin: Command not found. SGE_ROOT: Undefined variable. New invocation of trac-all Fri Sep 29 12:52:31 IST 2017 /home/repair/Desktop/tracula_config_files /home/repair/freesurfer/bin/trac-all -bedp -c PT9.config Subject PT9 SUBJECTS_DIR /home/repair/freesurfer/subjects/ FREESURFER_HOME /home/repair/freesurfer Actual FREESURFER_HOME /home/repair/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-dev-20170915- repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 1719224 1850284 281264 4310740 5555316 Swap: 0 0 0 ######################################## Program versions: $Id: trac-all,v 1.61 2016/12/18 14:01:27 ayendiki Exp $ mri_convert.bin --all-info ProgramName: mri_convert.bin ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:22:31-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ $Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:22:31-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:22:31-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:22:31-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:22:31-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:22:31-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/09/29-07:22:31-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 WARN: Running bedbostx locally - this might take a while WARN: It is recommended to run this step on a cluster bedpostx_mgh -n 2 /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri /home/repair/freesurfer/bin/bedpostx_mgh: 131: /home/repair/freesurfer/bin/bedpostx_mgh: Syntax error: "(" unexpected New invocation of trac-all Tue Oct 3 11:34:20 IST 2017 /home/repair/Desktop/tracula_config_files /home/repair/freesurfer/bin/trac-all -path -c PT9.config Subject PT9 SUBJECTS_DIR /home/repair/freesurfer/subjects/ FREESURFER_HOME /home/repair/freesurfer Actual FREESURFER_HOME /home/repair/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-dev-20170915- repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 653688 5344880 129208 1881680 6760048 Swap: 0 0 0 ######################################## Program versions: $Id: trac-all,v 1.61 2016/12/18 14:01:27 ayendiki Exp $ mri_convert.bin --all-info ProgramName: mri_convert.bin ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:04:21-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ $Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:04:21-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:04:21-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:04:21-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:04:21-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:04:21-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:04:22-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 New invocation of trac-paths repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 654248 5319612 129292 1906388 6759572 Swap: 0 0 0 #------------------------------------- /home/repair/freesurfer/bin/trac-paths #------------------------------------- #@# Path reconstruction Tue Oct 3 11:34:22 IST 2017 #------------------------------------- trac-paths finished without error at Tue Oct 3 11:34:22 IST 2017 New invocation of trac-all Tue Oct 3 11:36:12 IST 2017 /home/repair/Desktop/tracula_config_files /home/repair/freesurfer/bin/trac-all -path -c PT9.config Subject PT9 SUBJECTS_DIR /home/repair/freesurfer/subjects/ FREESURFER_HOME /home/repair/freesurfer Actual FREESURFER_HOME /home/repair/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-dev-20170915- repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 654468 5310988 136952 1914792 6751624 Swap: 0 0 0 ######################################## Program versions: $Id: trac-all,v 1.61 2016/12/18 14:01:27 ayendiki Exp $ mri_convert.bin --all-info ProgramName: mri_convert.bin ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:06:12-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ $Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:06:12-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:06:12-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:06:12-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:06:12-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:06:12-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:06:12-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 New invocation of trac-paths repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 655592 5309864 136952 1914792 6750500 Swap: 0 0 0 #------------------------------------- /home/repair/freesurfer/bin/trac-paths #------------------------------------- #@# Path reconstruction Tue Oct 3 11:36:12 IST 2017 #------------------------------------- trac-paths finished without error at Tue Oct 3 11:36:12 IST 2017 New invocation of trac-all Tue Oct 3 11:41:50 IST 2017 /home/repair/Desktop/tracula_config_files /home/repair/freesurfer/bin/trac-all -path -c PT9.config Subject PT9 SUBJECTS_DIR /home/repair/freesurfer/subjects/ FREESURFER_HOME /home/repair/freesurfer Actual FREESURFER_HOME /home/repair/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-dev-20170915- repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 686920 5063752 146976 2129576 6708560 Swap: 0 0 0 ######################################## Program versions: $Id: trac-all,v 1.61 2016/12/18 14:01:27 ayendiki Exp $ mri_convert.bin --all-info ProgramName: mri_convert.bin ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:11:50-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ $Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:11:50-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:11:50-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:11:50-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:11:50-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:11:50-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:11:50-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 New invocation of trac-paths repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 689232 5061192 147232 2129824 6705996 Swap: 0 0 0 #------------------------------------- /home/repair/freesurfer/bin/trac-paths #------------------------------------- #@# Path reconstruction Tue Oct 3 11:41:50 IST 2017 #------------------------------------- trac-paths finished without error at Tue Oct 3 11:41:50 IST 2017 New invocation of trac-all Tue Oct 3 11:46:31 IST 2017 /home/repair/Desktop/tracula_config_files /home/repair/freesurfer/bin/trac-all -path -c PT9.config Subject PT9 SUBJECTS_DIR /home/repair/freesurfer/subjects/ FREESURFER_HOME /home/repair/freesurfer Actual FREESURFER_HOME /home/repair/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 689260 5062268 143544 2128720 6709892 Swap: 0 0 0 ######################################## Program versions: $Id: trac-all,v 1.60.2.1 2016/12/20 17:04:05 zkaufman Exp $ mri_convert.bin --all-info ProgramName: mri_convert.bin ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/03-06:16:31-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ $Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/03-06:16:31-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/03-06:16:31-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:16:31-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/03-06:16:31-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/03-06:16:31-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:16:32-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 New invocation of trac-paths repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 691008 5036268 143548 2152972 6708156 Swap: 0 0 0 #------------------------------------- /home/repair/freesurfer/bin/trac-paths #------------------------------------- #@# Path reconstruction Tue Oct 3 11:46:32 IST 2017 #------------------------------------- trac-paths finished without error at Tue Oct 3 11:46:32 IST 2017 New invocation of trac-all Tue Oct 3 11:51:31 IST 2017 /home/repair/Desktop/tracula_config_files /home/repair/freesurfer/bin/trac-all -path -c PT9.config Subject PT9 SUBJECTS_DIR /home/repair/freesurfer/subjects/ FREESURFER_HOME /home/repair/freesurfer Actual FREESURFER_HOME /home/repair/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 973556 4574144 185376 2332548 6383460 Swap: 0 0 0 ######################################## Program versions: $Id: trac-all,v 1.60.2.1 2016/12/20 17:04:05 zkaufman Exp $ mri_convert.bin --all-info ProgramName: mri_convert.bin ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/03-06:21:31-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ $Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/03-06:21:31-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/03-06:21:31-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:21:31-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/03-06:21:31-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/03-06:21:31-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:21:31-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 New invocation of trac-paths repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 974912 4572348 185816 2332988 6381664 Swap: 0 0 0 #------------------------------------- /home/repair/freesurfer/bin/trac-paths #------------------------------------- #@# Path reconstruction Tue Oct 3 11:51:31 IST 2017 rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cst_AS_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cst_AS_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ilf_AS_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ilf_AS_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.unc_AS_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.unc_AS_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fmajor_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fminor_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.atr_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.atr_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cab_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cab_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ccg_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ccg_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slfp_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slfp_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slft_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slft_PP_avg33_mni_bbr /home/repair/freesurfer/bin/dmri_paths --outdir /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cst_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cst_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ilf_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ilf_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.unc_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.unc_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fmajor_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fminor_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.atr_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.atr_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cab_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cab_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ccg_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ccg_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slfp_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slfp_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slft_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slft_PP_avg33_mni_bbr --dwi /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi.nii.gz --grad /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvecs --bval /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvals --mask /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lowb_brain_mask.nii.gz --bpdir /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz --roi2 /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz --reg /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/diff2mni.bbr.mat --init /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_4.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_4.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt --nprior /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all --lprior /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all --seg /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_4_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_4_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt cwd /home/repair/Desktop/tracula_config_files cmdline /home/repair/freesurfer/bin/dmri_paths --outdir /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cst_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cst_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ilf_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ilf_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.unc_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.unc_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fmajor_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fminor_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.atr_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.atr_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cab_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cab_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ccg_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ccg_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slfp_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slfp_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slft_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slft_PP_avg33_mni_bbr --dwi /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi.nii.gz --grad /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvecs --bval /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvals --mask /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lowb_brain_mask.nii.gz --bpdir /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz --roi2 /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz --reg /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/diff2mni.bbr.mat --init /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_4.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_4.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt --nprior /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all --lprior /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all --seg /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_4_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_4_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt sysname Linux hostname Radiology machine x86_64 user repair Output directory: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cst_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cst_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ilf_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ilf_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.unc_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.unc_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fmajor_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fminor_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.atr_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.atr_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cab_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cab_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ccg_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ccg_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slfp_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slfp_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slft_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slft_PP_avg33_mni_bbr DWIs: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi.nii.gz Gradients: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvecs B-values: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvals Mask: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lowb_brain_mask.nii.gz BEDPOST directory: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point file: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_4.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_4.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt End ROI 1: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz End ROI 2: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz Neighbor aseg prior: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all Neighbor aseg label ID list: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all Neighbor aseg prior set: 14 Local aseg prior: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all Local aseg label ID list: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all Local aseg prior set: 15 Segmentation map: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/aparc+aseg.nii.gz DWI-to-atlas affine registration: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/diff2mni.bbr.mat Number of burn-in samples: 200 Number of post-burn-in samples: 7500 Keep every: 5-th sample Update proposal every: 0-th sample Initial proposal SD file: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_4_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_4_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt Loading DWIs from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi.nii.gz Loading mask from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lowb_brain_mask.nii.gz Loading BEDPOST parameter samples from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri.bedpostX Loading b-values from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvals Loading gradients from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvecs INFO: Found 1 baseline images (b = 0) out of a total of 33 frames INFO: Found 102113 voxels in brain mask INFO: Resolution of DWI space relative to base space is (1, 1, 1) Loading atlas reference volume from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz niiRead(): error opening file /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz ERROR: Could not read /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux trac-paths exited with ERRORS at Tue Oct 3 11:51:43 IST 2017 New invocation of trac-all Tue Oct 3 11:55:53 IST 2017 /home/repair/Desktop/tracula_config_files /home/repair/freesurfer/bin/trac-all -path -c PT9.config Subject PT9 SUBJECTS_DIR /home/repair/freesurfer/subjects/ FREESURFER_HOME /home/repair/freesurfer Actual FREESURFER_HOME /home/repair/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 1185228 4344740 193240 2350280 6163588 Swap: 0 0 0 ######################################## Program versions: $Id: trac-all,v 1.60.2.1 2016/12/20 17:04:05 zkaufman Exp $ mri_convert.bin --all-info ProgramName: mri_convert.bin ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/03-06:25:53-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ $Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/03-06:25:53-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/03-06:25:53-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:25:53-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/03-06:25:53-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/03-06:25:53-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:25:53-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 New invocation of trac-paths repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 1186820 4342892 193496 2350536 6161740 Swap: 0 0 0 #------------------------------------- /home/repair/freesurfer/bin/trac-paths #------------------------------------- #@# Path reconstruction Tue Oct 3 11:55:53 IST 2017 #------------------------------------- trac-paths finished without error at Tue Oct 3 11:55:53 IST 2017 New invocation of trac-all Tue Oct 3 12:15:59 IST 2017 /home/repair/Desktop/tracula_config_files /home/repair/freesurfer/bin/trac-all -path -c PT9.config Subject PT9 SUBJECTS_DIR /home/repair/freesurfer/subjects/ FREESURFER_HOME /home/repair/freesurfer Actual FREESURFER_HOME /home/repair/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-dev-20170915- repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 1063500 4451888 195224 2364860 6283412 Swap: 0 0 0 ######################################## Program versions: $Id: trac-all,v 1.61 2016/12/18 14:01:27 ayendiki Exp $ mri_convert.bin --all-info ProgramName: mri_convert.bin ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:45:59-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ $Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:45:59-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:45:59-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:45:59-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:45:59-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:45:59-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:45:59-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 New invocation of trac-paths repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 1064572 4450700 195288 2364976 6282224 Swap: 0 0 0 #------------------------------------- /home/repair/freesurfer/bin/trac-paths #------------------------------------- #@# Path reconstruction Tue Oct 3 12:16:00 IST 2017 rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cst_AS_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cst_AS_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ilf_AS_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ilf_AS_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.unc_AS_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.unc_AS_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fmajor_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fminor_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.atr_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.atr_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cab_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cab_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ccg_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ccg_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slfp_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slfp_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slft_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slft_PP_avg33_mni_bbr /home/repair/freesurfer/bin/dmri_paths --outdir /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cst_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cst_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ilf_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ilf_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.unc_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.unc_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fmajor_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fminor_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.atr_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.atr_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cab_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cab_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ccg_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ccg_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slfp_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slfp_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slft_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slft_PP_avg33_mni_bbr --dwi /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi.nii.gz --grad /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvecs --bval /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvals --mask /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lowb_brain_mask.nii.gz --bpdir /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz --roi2 /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz --reg /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/diff2mni.bbr.mat --init /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_4.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_4.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt --nprior /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all --lprior /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all --seg /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_4_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_4_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt cwd /home/repair/Desktop/tracula_config_files cmdline /home/repair/freesurfer/bin/dmri_paths --outdir /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cst_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cst_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ilf_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ilf_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.unc_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.unc_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fmajor_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fminor_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.atr_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.atr_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cab_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cab_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ccg_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ccg_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slfp_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slfp_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slft_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slft_PP_avg33_mni_bbr --dwi /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi.nii.gz --grad /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvecs --bval /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvals --mask /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lowb_brain_mask.nii.gz --bpdir /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz --roi2 /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz --reg /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/diff2mni.bbr.mat --init /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_4.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_4.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt --nprior /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all --lprior /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all --seg /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_4_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_4_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt sysname Linux hostname Radiology machine x86_64 user repair Output directory: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cst_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cst_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ilf_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ilf_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.unc_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.unc_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fmajor_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fminor_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.atr_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.atr_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cab_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cab_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ccg_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ccg_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slfp_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slfp_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slft_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slft_PP_avg33_mni_bbr DWIs: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi.nii.gz Gradients: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvecs B-values: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvals Mask: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lowb_brain_mask.nii.gz BEDPOST directory: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point file: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_4.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_4.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt End ROI 1: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz End ROI 2: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz Neighbor aseg prior: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all Neighbor aseg label ID list: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all Neighbor aseg prior set: 14 Local aseg prior: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all Local aseg label ID list: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all Local aseg prior set: 15 Segmentation map: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/aparc+aseg.nii.gz DWI-to-atlas affine registration: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/diff2mni.bbr.mat Number of burn-in samples: 200 Number of post-burn-in samples: 7500 Keep every: 5-th sample Update proposal every: 0-th sample Initial proposal SD file: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_4_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_4_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt Loading DWIs from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi.nii.gz Loading mask from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lowb_brain_mask.nii.gz Loading BEDPOST parameter samples from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri.bedpostX Loading b-values from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvals Loading gradients from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvecs INFO: Found 1 baseline images (b = 0) out of a total of 33 frames INFO: Found 102113 voxels in brain mask INFO: Resolution of DWI space relative to base space is (1, 1, 1) Loading atlas reference volume from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz niiRead(): error opening file /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz ERROR: Could not read /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux trac-paths exited with ERRORS at Tue Oct 3 12:16:11 IST 2017 New invocation of trac-all Tue Oct 3 12:16:35 IST 2017 /home/repair/Desktop/tracula_config_files /home/repair/freesurfer/bin/trac-all -path -c PT9.config Subject PT9 SUBJECTS_DIR /home/repair/freesurfer/subjects/ FREESURFER_HOME /home/repair/freesurfer Actual FREESURFER_HOME /home/repair/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-dev-20170915- repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 1142924 4367452 199268 2369872 6199928 Swap: 0 0 0 ######################################## Program versions: $Id: trac-all,v 1.61 2016/12/18 14:01:27 ayendiki Exp $ mri_convert.bin --all-info ProgramName: mri_convert.bin ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:46:35-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ $Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:46:35-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:46:35-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:46:35-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:46:35-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:46:35-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:46:35-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 New invocation of trac-paths repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 1143468 4366908 199268 2369872 6199384 Swap: 0 0 0 #------------------------------------- /home/repair/freesurfer/bin/trac-paths #------------------------------------- #@# Path reconstruction Tue Oct 3 12:16:35 IST 2017 rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cst_AS_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cst_AS_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ilf_AS_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ilf_AS_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.unc_AS_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.unc_AS_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fmajor_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fminor_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.atr_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.atr_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cab_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cab_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ccg_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ccg_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slfp_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slfp_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slft_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slft_PP_avg33_mni_bbr /home/repair/freesurfer/bin/dmri_paths --outdir /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cst_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cst_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ilf_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ilf_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.unc_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.unc_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fmajor_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fminor_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.atr_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.atr_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cab_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cab_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ccg_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ccg_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slfp_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slfp_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slft_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slft_PP_avg33_mni_bbr --dwi /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi.nii.gz --grad /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvecs --bval /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvals --mask /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lowb_brain_mask.nii.gz --bpdir /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz --roi2 /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz --reg /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/diff2mni.bbr.mat --init /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_4.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_4.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt --nprior /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all --lprior /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all --seg /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_4_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_4_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt cwd /home/repair/Desktop/tracula_config_files cmdline /home/repair/freesurfer/bin/dmri_paths --outdir /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cst_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cst_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ilf_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ilf_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.unc_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.unc_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fmajor_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fminor_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.atr_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.atr_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cab_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cab_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ccg_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ccg_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slfp_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slfp_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slft_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slft_PP_avg33_mni_bbr --dwi /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi.nii.gz --grad /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvecs --bval /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvals --mask /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lowb_brain_mask.nii.gz --bpdir /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz --roi2 /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz --reg /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/diff2mni.bbr.mat --init /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_4.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_4.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt --nprior /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all --lprior /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all --seg /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_4_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_4_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt sysname Linux hostname Radiology machine x86_64 user repair Output directory: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cst_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cst_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ilf_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ilf_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.unc_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.unc_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fmajor_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fminor_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.atr_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.atr_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cab_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cab_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ccg_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ccg_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slfp_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slfp_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slft_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slft_PP_avg33_mni_bbr DWIs: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi.nii.gz Gradients: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvecs B-values: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvals Mask: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lowb_brain_mask.nii.gz BEDPOST directory: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point file: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_4.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_4.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt End ROI 1: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz End ROI 2: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz Neighbor aseg prior: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all Neighbor aseg label ID list: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all Neighbor aseg prior set: 14 Local aseg prior: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all Local aseg label ID list: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all Local aseg prior set: 15 Segmentation map: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/aparc+aseg.nii.gz DWI-to-atlas affine registration: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/diff2mni.bbr.mat Number of burn-in samples: 200 Number of post-burn-in samples: 7500 Keep every: 5-th sample Update proposal every: 0-th sample Initial proposal SD file: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_4_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_4_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt Loading DWIs from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi.nii.gz Loading mask from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lowb_brain_mask.nii.gz Loading BEDPOST parameter samples from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri.bedpostX Loading b-values from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvals Loading gradients from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvecs INFO: Found 1 baseline images (b = 0) out of a total of 33 frames INFO: Found 102113 voxels in brain mask INFO: Resolution of DWI space relative to base space is (1, 1, 1) Loading atlas reference volume from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz niiRead(): error opening file /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz ERROR: Could not read /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux trac-paths exited with ERRORS at Tue Oct 3 12:16:47 IST 2017 New invocation of trac-all Tue Oct 3 12:18:09 IST 2017 /home/repair/Desktop/tracula_config_files /home/repair/freesurfer/bin/trac-all -path -c PT9.config Subject PT9 SUBJECTS_DIR /home/repair/freesurfer/subjects/ FREESURFER_HOME /home/repair/freesurfer Actual FREESURFER_HOME /home/repair/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-dev-20170915- repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 1180552 4329608 199048 2370088 6162328 Swap: 0 0 0 ######################################## Program versions: $Id: trac-all,v 1.61 2016/12/18 14:01:27 ayendiki Exp $ mri_convert.bin --all-info ProgramName: mri_convert.bin ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:48:09-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ $Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:48:09-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:48:09-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:48:09-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:48:09-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:48:09-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-06:48:09-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 New invocation of trac-paths repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 1181892 4328268 199048 2370088 6160988 Swap: 0 0 0 #------------------------------------- /home/repair/freesurfer/bin/trac-paths #------------------------------------- #@# Path reconstruction Tue Oct 3 12:18:09 IST 2017 #------------------------------------- trac-paths finished without error at Tue Oct 3 12:18:09 IST 2017 New invocation of trac-all Tue Oct 3 12:34:26 IST 2017 /home/repair/Desktop/tracula_config_files /home/repair/freesurfer/bin/trac-all -path -c PT9.config Subject PT9 SUBJECTS_DIR /home/repair/freesurfer/subjects/ FREESURFER_HOME /home/repair/freesurfer Actual FREESURFER_HOME /home/repair/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-dev-20170915- repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 695420 4861920 140864 2322908 6706372 Swap: 0 0 0 ######################################## Program versions: $Id: trac-all,v 1.61 2016/12/18 14:01:27 ayendiki Exp $ mri_convert.bin --all-info ProgramName: mri_convert.bin ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-07:04:26-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ $Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-07:04:26-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-07:04:26-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-07:04:26-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-07:04:26-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-07:04:26-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-07:04:26-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 New invocation of trac-paths repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 696532 4860808 140864 2322908 6705260 Swap: 0 0 0 #------------------------------------- /home/repair/freesurfer/bin/trac-paths #------------------------------------- #@# Path reconstruction Tue Oct 3 12:34:26 IST 2017 rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cst_AS_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cst_AS_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ilf_AS_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ilf_AS_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.unc_AS_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.unc_AS_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fmajor_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fminor_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.atr_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.atr_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cab_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cab_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ccg_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ccg_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slfp_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slfp_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slft_PP_avg33_mni_bbr rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slft_PP_avg33_mni_bbr /home/repair/freesurfer/bin/dmri_paths --outdir /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cst_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cst_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ilf_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ilf_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.unc_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.unc_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fmajor_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fminor_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.atr_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.atr_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cab_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cab_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ccg_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ccg_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slfp_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slfp_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slft_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slft_PP_avg33_mni_bbr --dwi /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi.nii.gz --grad /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvecs --bval /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvals --mask /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lowb_brain_mask.nii.gz --bpdir /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz --roi2 /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz --reg /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/diff2mni.bbr.mat --init /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_4.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_4.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt --nprior /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all --lprior /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all --seg /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_4_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_4_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt cwd /home/repair/Desktop/tracula_config_files cmdline /home/repair/freesurfer/bin/dmri_paths --outdir /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cst_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cst_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ilf_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ilf_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.unc_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.unc_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fmajor_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fminor_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.atr_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.atr_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cab_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cab_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ccg_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ccg_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slfp_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slfp_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slft_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slft_PP_avg33_mni_bbr --dwi /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi.nii.gz --grad /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvecs --bval /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvals --mask /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lowb_brain_mask.nii.gz --bpdir /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz --roi2 /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz --reg /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/diff2mni.bbr.mat --init /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_4.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_4.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt --nprior /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all --lprior /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all --seg /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_4_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_4_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt sysname Linux hostname Radiology machine x86_64 user repair Output directory: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cst_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cst_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ilf_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ilf_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.unc_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.unc_AS_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fmajor_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fminor_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.atr_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.atr_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cab_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cab_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ccg_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ccg_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slfp_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slfp_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slft_PP_avg33_mni_bbr /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slft_PP_avg33_mni_bbr DWIs: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi.nii.gz Gradients: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvecs B-values: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvals Mask: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lowb_brain_mask.nii.gz BEDPOST directory: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point file: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_4.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_4.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt End ROI 1: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz End ROI 2: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz Neighbor aseg prior: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all Neighbor aseg label ID list: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all Neighbor aseg prior set: 14 Local aseg prior: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all Local aseg label ID list: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all Local aseg prior set: 15 Segmentation map: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/aparc+aseg.nii.gz DWI-to-atlas affine registration: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/diff2mni.bbr.mat Number of burn-in samples: 200 Number of post-burn-in samples: 7500 Keep every: 5-th sample Update proposal every: 0-th sample Initial proposal SD file: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_4_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_4_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt Loading DWIs from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi.nii.gz Loading mask from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lowb_brain_mask.nii.gz Loading BEDPOST parameter samples from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri.bedpostX Loading b-values from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvals Loading gradients from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvecs INFO: Found 1 baseline images (b = 0) out of a total of 33 frames INFO: Found 102113 voxels in brain mask INFO: Resolution of DWI space relative to base space is (1, 1, 1) Loading atlas reference volume from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz niiRead(): error opening file /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz ERROR: Could not read /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux trac-paths exited with ERRORS at Tue Oct 3 12:34:37 IST 2017 New invocation of trac-all Tue Oct 3 12:34:59 IST 2017 /home/repair/Desktop/tracula_config_files /home/repair/freesurfer/bin/trac-all -path -c PT9.config Subject PT9 SUBJECTS_DIR /home/repair/freesurfer/subjects/ FREESURFER_HOME /home/repair/freesurfer Actual FREESURFER_HOME /home/repair/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-dev-20170915- repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 696464 4858816 142868 2324968 6703384 Swap: 0 0 0 ######################################## Program versions: $Id: trac-all,v 1.61 2016/12/18 14:01:27 ayendiki Exp $ mri_convert.bin --all-info ProgramName: mri_convert.bin ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-07:04:59-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ $Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-07:04:59-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-07:04:59-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-07:04:59-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-07:04:59-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-07:04:59-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-07:04:59-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 New invocation of trac-paths repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 696832 4857948 143160 2325468 6702500 Swap: 0 0 0 #------------------------------------- /home/repair/freesurfer/bin/trac-paths #------------------------------------- #@# Path reconstruction Tue Oct 3 12:34:59 IST 2017 rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cst_AS_avg33_mni_flt rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cst_AS_avg33_mni_flt rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ilf_AS_avg33_mni_flt rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ilf_AS_avg33_mni_flt rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.unc_AS_avg33_mni_flt rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.unc_AS_avg33_mni_flt rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fmajor_PP_avg33_mni_flt rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fminor_PP_avg33_mni_flt rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.atr_PP_avg33_mni_flt rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.atr_PP_avg33_mni_flt rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cab_PP_avg33_mni_flt rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cab_PP_avg33_mni_flt rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ccg_PP_avg33_mni_flt rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ccg_PP_avg33_mni_flt rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slfp_PP_avg33_mni_flt rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slfp_PP_avg33_mni_flt rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slft_PP_avg33_mni_flt rm -rf /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slft_PP_avg33_mni_flt /home/repair/freesurfer/bin/dmri_paths --outdir /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cst_AS_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cst_AS_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ilf_AS_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ilf_AS_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.unc_AS_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.unc_AS_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fmajor_PP_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fminor_PP_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.atr_PP_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.atr_PP_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cab_PP_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cab_PP_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ccg_PP_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ccg_PP_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slfp_PP_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slfp_PP_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slft_PP_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slft_PP_avg33_mni_flt --dwi /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi.nii.gz --grad /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvecs --bval /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvals --mask /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lowb_brain_mask.nii.gz --bpdir /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_flt_end1_dil.nii.gz --roi2 /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_flt_end2_dil.nii.gz --reg /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/diff2mni.flt.mat --init /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_6.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cst_AS_avg33_mni_flt_cpts_6.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ilf_AS_avg33_mni_flt_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ilf_AS_avg33_mni_flt_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.unc_AS_avg33_mni_flt_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.unc_AS_avg33_mni_flt_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fmajor_PP_avg33_mni_flt_cpts_7.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fminor_PP_avg33_mni_flt_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.atr_PP_avg33_mni_flt_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.atr_PP_avg33_mni_flt_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cab_PP_avg33_mni_flt_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cab_PP_avg33_mni_flt_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ccg_PP_avg33_mni_flt_cpts_4.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ccg_PP_avg33_mni_flt_cpts_4.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slfp_PP_avg33_mni_flt_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slfp_PP_avg33_mni_flt_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slft_PP_avg33_mni_flt_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slft_PP_avg33_mni_flt_cpts_5.txt --nprior /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnids_all --lprior /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsids_all --seg /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_6_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cst_AS_avg33_mni_flt_cpts_6_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ilf_AS_avg33_mni_flt_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ilf_AS_avg33_mni_flt_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.unc_AS_avg33_mni_flt_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.unc_AS_avg33_mni_flt_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fmajor_PP_avg33_mni_flt_cpts_7_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fminor_PP_avg33_mni_flt_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.atr_PP_avg33_mni_flt_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.atr_PP_avg33_mni_flt_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cab_PP_avg33_mni_flt_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cab_PP_avg33_mni_flt_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ccg_PP_avg33_mni_flt_cpts_4_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ccg_PP_avg33_mni_flt_cpts_4_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slfp_PP_avg33_mni_flt_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slfp_PP_avg33_mni_flt_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slft_PP_avg33_mni_flt_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slft_PP_avg33_mni_flt_cpts_5_std.txt cwd /home/repair/Desktop/tracula_config_files cmdline /home/repair/freesurfer/bin/dmri_paths --outdir /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cst_AS_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cst_AS_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ilf_AS_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ilf_AS_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.unc_AS_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.unc_AS_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fmajor_PP_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fminor_PP_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.atr_PP_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.atr_PP_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cab_PP_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cab_PP_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ccg_PP_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ccg_PP_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slfp_PP_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slfp_PP_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slft_PP_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slft_PP_avg33_mni_flt --dwi /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi.nii.gz --grad /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvecs --bval /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvals --mask /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lowb_brain_mask.nii.gz --bpdir /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_flt_end1_dil.nii.gz --roi2 /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_flt_end2_dil.nii.gz --reg /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/diff2mni.flt.mat --init /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_6.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cst_AS_avg33_mni_flt_cpts_6.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ilf_AS_avg33_mni_flt_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ilf_AS_avg33_mni_flt_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.unc_AS_avg33_mni_flt_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.unc_AS_avg33_mni_flt_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fmajor_PP_avg33_mni_flt_cpts_7.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fminor_PP_avg33_mni_flt_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.atr_PP_avg33_mni_flt_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.atr_PP_avg33_mni_flt_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cab_PP_avg33_mni_flt_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cab_PP_avg33_mni_flt_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ccg_PP_avg33_mni_flt_cpts_4.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ccg_PP_avg33_mni_flt_cpts_4.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slfp_PP_avg33_mni_flt_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slfp_PP_avg33_mni_flt_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slft_PP_avg33_mni_flt_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slft_PP_avg33_mni_flt_cpts_5.txt --nprior /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnids_all --lprior /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsids_all --seg /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_6_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cst_AS_avg33_mni_flt_cpts_6_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ilf_AS_avg33_mni_flt_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ilf_AS_avg33_mni_flt_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.unc_AS_avg33_mni_flt_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.unc_AS_avg33_mni_flt_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fmajor_PP_avg33_mni_flt_cpts_7_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fminor_PP_avg33_mni_flt_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.atr_PP_avg33_mni_flt_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.atr_PP_avg33_mni_flt_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cab_PP_avg33_mni_flt_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cab_PP_avg33_mni_flt_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ccg_PP_avg33_mni_flt_cpts_4_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ccg_PP_avg33_mni_flt_cpts_4_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slfp_PP_avg33_mni_flt_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slfp_PP_avg33_mni_flt_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slft_PP_avg33_mni_flt_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slft_PP_avg33_mni_flt_cpts_5_std.txt sysname Linux hostname Radiology machine x86_64 user repair Output directory: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cst_AS_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cst_AS_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ilf_AS_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ilf_AS_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.unc_AS_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.unc_AS_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fmajor_PP_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/fminor_PP_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.atr_PP_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.atr_PP_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.cab_PP_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.cab_PP_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.ccg_PP_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.ccg_PP_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slfp_PP_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slfp_PP_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/lh.slft_PP_avg33_mni_flt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dpath/rh.slft_PP_avg33_mni_flt DWIs: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi.nii.gz Gradients: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvecs B-values: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvals Mask: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lowb_brain_mask.nii.gz BEDPOST directory: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point file: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_6.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cst_AS_avg33_mni_flt_cpts_6.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ilf_AS_avg33_mni_flt_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ilf_AS_avg33_mni_flt_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.unc_AS_avg33_mni_flt_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.unc_AS_avg33_mni_flt_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fmajor_PP_avg33_mni_flt_cpts_7.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fminor_PP_avg33_mni_flt_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.atr_PP_avg33_mni_flt_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.atr_PP_avg33_mni_flt_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cab_PP_avg33_mni_flt_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cab_PP_avg33_mni_flt_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ccg_PP_avg33_mni_flt_cpts_4.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ccg_PP_avg33_mni_flt_cpts_4.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slfp_PP_avg33_mni_flt_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slfp_PP_avg33_mni_flt_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slft_PP_avg33_mni_flt_cpts_5.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slft_PP_avg33_mni_flt_cpts_5.txt End ROI 1: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_flt_end1_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_flt_end1_dil.nii.gz End ROI 2: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_flt_end2_dil.nii.gz /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_flt_end2_dil.nii.gz Neighbor aseg prior: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnprior_all Neighbor aseg label ID list: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnids_all Neighbor aseg prior set: 14 Local aseg prior: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsprior_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsprior_all Local aseg label ID list: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fmajor_PP_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/fminor_PP_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsids_all /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsids_all Local aseg prior set: 15 Segmentation map: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/aparc+aseg.nii.gz DWI-to-atlas affine registration: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/xfms/diff2mni.flt.mat Number of burn-in samples: 200 Number of post-burn-in samples: 7500 Keep every: 5-th sample Update proposal every: 0-th sample Initial proposal SD file: /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_6_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cst_AS_avg33_mni_flt_cpts_6_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ilf_AS_avg33_mni_flt_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ilf_AS_avg33_mni_flt_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.unc_AS_avg33_mni_flt_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.unc_AS_avg33_mni_flt_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fmajor_PP_avg33_mni_flt_cpts_7_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/fminor_PP_avg33_mni_flt_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.atr_PP_avg33_mni_flt_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.atr_PP_avg33_mni_flt_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.cab_PP_avg33_mni_flt_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.cab_PP_avg33_mni_flt_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.ccg_PP_avg33_mni_flt_cpts_4_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.ccg_PP_avg33_mni_flt_cpts_4_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slfp_PP_avg33_mni_flt_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slfp_PP_avg33_mni_flt_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lh.slft_PP_avg33_mni_flt_cpts_5_std.txt /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/rh.slft_PP_avg33_mni_flt_cpts_5_std.txt Loading DWIs from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/dwi.nii.gz Loading mask from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/diff/lowb_brain_mask.nii.gz Loading BEDPOST parameter samples from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri.bedpostX Loading b-values from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvals Loading gradients from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dmri/bvecs INFO: Found 1 baseline images (b = 0) out of a total of 33 frames INFO: Found 102113 voxels in brain mask INFO: Resolution of DWI space relative to base space is (1, 1, 1) Loading atlas reference volume from /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_flt_end1_dil.nii.gz niiRead(): error opening file /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_flt_end1_dil.nii.gz ERROR: Could not read /home/repair/Desktop/TRACULA_OUTPUT/PT9/dlabel/mni/lh.cst_AS_avg33_mni_flt_end1_dil.nii.gz Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux trac-paths exited with ERRORS at Tue Oct 3 12:35:11 IST 2017 New invocation of trac-all Tue Oct 3 15:23:02 IST 2017 /home/repair/Desktop/tracula_config_files /home/repair/freesurfer/bin/trac-all -path -c PT9.config Subject PT9 SUBJECTS_DIR /home/repair/freesurfer/subjects/ FREESURFER_HOME /home/repair/freesurfer Actual FREESURFER_HOME /home/repair/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-dev-20170915- repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 1188644 4331200 163480 2360404 6189156 Swap: 0 0 0 ######################################## Program versions: $Id: trac-all,v 1.61 2016/12/18 14:01:27 ayendiki Exp $ mri_convert.bin --all-info ProgramName: mri_convert.bin ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-09:53:02-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ $Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-09:53:02-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-09:53:02-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-09:53:02-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-09:53:02-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-09:53:02-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/03-09:53:02-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 New invocation of trac-paths repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 1189304 4330540 163480 2360404 6188496 Swap: 0 0 0 #------------------------------------- /home/repair/freesurfer/bin/trac-paths #------------------------------------- #@# Path reconstruction Tue Oct 3 15:23:02 IST 2017 #------------------------------------- trac-paths finished without error at Tue Oct 3 15:23:02 IST 2017 New invocation of trac-all Tue Oct 10 09:29:48 IST 2017 /home/repair/Desktop/tracula_config_files /home/repair/freesurfer/bin/trac-all -path -c PT9.config Subject PT9 SUBJECTS_DIR /home/repair/freesurfer/subjects/ FREESURFER_HOME /home/repair/freesurfer Actual FREESURFER_HOME /home/repair/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-dev-20170915- repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 890644 6058156 148820 931448 6569476 Swap: 0 0 0 ######################################## Program versions: $Id: trac-all,v 1.61 2016/12/18 14:01:27 ayendiki Exp $ mri_convert.bin --all-info ProgramName: mri_convert.bin ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/10-03:59:49-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ $Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/10-03:59:49-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/10-03:59:49-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/10-03:59:49-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/10-03:59:49-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/10-03:59:49-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/10-03:59:50-GMT BuildTimeStamp: Sep 15 2017 00:02:29 CVS: User: repair Machine: Radiology Platform: Linux PlatformVersion: 4.4.0-93-generic CompilerName: GCC CompilerVersion: 40400 New invocation of trac-paths repair Radiology Linux Radiology 4.4.0-93-generic #116-Ubuntu SMP Fri Aug 11 21:17:51 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 30623 maxlocks unlimited maxsignal 30623 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 7880248 892104 6030060 148828 958084 6567756 Swap: 0 0 0 #------------------------------------- /home/repair/freesurfer/bin/trac-paths #------------------------------------- #@# Path reconstruction Tue Oct 10 09:29:50 IST 2017 #------------------------------------- trac-paths finished without error at Tue Oct 10 09:29:50 IST 2017