Hi Davide

do you mean $SUBJECTS_DIR/mri or $SUBJECTS_DIR/60_AV/mri? It should be the
latter, not the former. Also, can you send us the output of ls -l on the
wm.mgz? And finally, you probably want to use rh.aparc.annot not
lh.aparc.annot since you specified rh on the command line

cheers
Bruce


  On Fri, 24 Aug 2018, Davide Momi wrote:

>
>         External Email - Use Caution        
>
> Dear Bruce, 
>
> thanks for your response. 
>
> my SUBJECTS_DIR is set to:  /Users/davidemomi/Downloads/Broad_60_AV, which is actually where the
> output of recon-all is located. 
>
> the file wm.mgz exists and is in the $SUBJECTS_DIR/mri directory
>
> Thanks again 
>
>
>
>
> Il giorno ven 24 ago 2018 alle ore 16:49 Bruce Fischl <fischl@nmr.mgh.harvard.edu> ha scritto:
>       Hi Davide
>
>       does that file exist? What is your SUBJECTS_DIR set to?
>
>       cheers
>       Bruce
>       On Fri, 24 Aug 2018,
>       Davide Momi wrote:
>
>       >
>       >         External Email - Use Caution        
>       >
>       > Dear FreeSurfer,
>       >
>       > I have a problem when I use mris_anatomical_stats. It gives me an error saying that it
>       couldn't read
>       >  the input volume which is the wm.mgz file.
>       > would you please help me how I should fix this problem?
>       > this is the command which I used: 
>       >
>       > mris_anatomical_stats -a label/lh.aparc.annot -b 60_AV rh
>       >
>       > computing statistics for each annotation in label/lh.aparc.annot.
>       >
>       > reading volume /Users/davidemomi/Downloads/Broad_60_AV//60_AV/mri/wm.mgz...
>       >
>       > mghRead(/Users/davidemomi/Downloads/Broad_60_AV//60_AV/mri/wm.mgz, -1): could not open
>       file
>       >
>       > mris_anatomical_stats: could not read input volume
>       > /Users/davidemomi/Downloads/Broad_60_AV//60_AV/mri/wm.mgz
>       >
>       >
>       > Thanks in advance
>       >
>       >
>       > Davide 
>       >
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