External Email - Use Caution        

Hi Gregorio,

You should be able to use mri_binarize to create masks from the hippocampal seg files
MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://surfer.nmr.mgh.harvard.edu/fswiki/mri_binarize

-Paul

On Mon, Jul 19, 2021 at 3:40 AM Gregorio Borghi <gregorio.borghi.uk@gmail.com> wrote:

        External Email - Use Caution        

Dear sir/madam,

I have successfully segmented my participants' hippocampus thanks to "segmentHA_T2.sh" command, which provided me both right and left hippocampal segmented files. However, I was wondering if it is possible to obtain single files for each of the hippocampal subfields (e.g. CA1 and CA3) since I would like to use those files as masks and I need them to be distinguishable. Thanks in advance.

--
Kind regards,
Gregorio
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer