Hi FS experts,I wanted to run the gyrification index for all patients with Schizophreniaand volunteers. When I entered the command:"recon-all -s SATM124 -qcache -measure pial_lgi" and the terminal output" Subject Stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96cCurrent Stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96cINFO: SUBJECTS_DIR is /usr/local/freesurfer/subjectsActual FREESURFER_HOME /usr/local/freesurfer-rw-rw-r-- 1 root 1590 1054464 Jul 6 16:02/usr/local/freesurfer/subjects/SATM124/scripts/recon-all.logLinux naren123 4.15.0-52-generic #56~16.04.1-Ubuntu SMP Thu Jun 6 12:03:31UTC 2019 x86_64 x86_64 x86_64 GNU/Linux'/usr/local/freesurfer/bin/recon-all' ->'/usr/local/freesurfer/subjects/SATM124/scripts/recon-all.local-copy'#--------------------------------------------#@# Qdec Cache preproc lh pial_lgi fsaverage Sat Jul 6 16:39:03 IST 2019/usr/local/freesurfer/subjects/SATM124/surf mris_preproc --s SATM124 --hemi lh --meas pial_lgi --target fsaverage--out lh.pial_lgi.fsaverage.mghnsubjects = 1ERROR: cannot find /usr/local/freesurfer/subjects/SATM124/surf/lh.pial_lgiLinux naren123 4.15.0-52-generic #56~16.04.1-Ubuntu SMP Thu Jun 6 12:03:31UTC 2019 x86_64 x86_64 x86_64 GNU/Linuxrecon-all -s SATM124 exited with ERRORS at Sat Jul 6 16:39:03 IST 2019For more details, see the log file/usr/local/freesurfer/subjects/SATM124/scripts/recon-all.logTo report a problem, seehttp://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting"There is no file called 'lh.pial_lgi" in the surf directory for all subjects. I'm using freesurfer version6.0.
Would appreciate any help.
Thanks & regards
-Korann