I just noticed that that file "fmc.odd.sm5.nii.gz" is created after selxavg3-sess. I was wondering how can I preprocess the functional image and have the output with the same dimension as the f.nii.gz without performing any contrasts. I just need to look at the signal in some ROIs without performing any contrasts. I hope this makes sense.

Thanks,

Ash

On Mon, Jan 29, 2018 at 10:54 PM, Ashley Cole <coleashley00@gmail.com> wrote:

Hello,

I have several nifti files. I have preprocessed some of them before. I used this command:
preproc-sess -s sess01 -fsd bold -stc odd -surface self lhrh -mni305 -fwhm 5 -per-session -force

The output files contained fmc.odd.sm5.self.lh.nii.gz, fmc.odd.sm5.self.rh.nii.gz, fmc.odd.sm5.mni305.2mm.nii.gz, and fmc.odd.sm5.nii.gz. Which this last one (fmc.odd.sm5.nii.gz) was the file that I needed for my further analyses. However, when I run the same command on another nifti file which was obtained from the same scanner and the same session, the output doesn't have the fmc.odd.sm5.nii.gz.

I ran it several times but it never gave me that file. Also, it doesn't give me any errors.

I appreciate any help.

Ash