Hello,

I am trying to run recon-all on a dataset and am running into errors with one of my subjects.

I get an error at the following point

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Iteration 1 Tue Mar 19 10:11:08 EDT 2019

nu_correct -clobber ./tmp.mri_nu_correct.mni.40972/nu0.mnc ./tmp.mri_nu_correct.mni.40972/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.40972/0/ -iterations 1000 -distance 50

[administrator@hlhp-105.umd.edu:/Volumes/DANIEL/freesurfer/Ex.AES118/mri/] [2019-03-19 10:11:09] running:

/Applications/freesurfer//mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 1000 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 50 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.40972/0/ ./tmp.mri_nu_correct.mni.40972/nu0.mnc ./tmp.mri_nu_correct.mni.40972/nu1.imp

Processing:.................................................................Done

ncvarget: ncid 4; varid 6: Argument list too long

miicv_get: MINC package entry point

nu_estimate_np_and_em: crashed while running mincmath (termination status=768)

nu_correct: crashed while running nu_estimate_np_and_em (termination status=768)

ERROR: nu_correct

Darwin hlhp-105.umd.edu 16.7.0 Darwin Kernel Version 16.7.0: Wed Oct 10 20:06:00 PDT 2018; root:xnu-3789.73.24~1/RELEASE_X86_64 x86_64

recon-all -s Ex.AES118 exited with ERRORS at Tue Mar 19 10:11:18 EDT 2019

For more details, see the log file /Volumes/DANIEL/freesurfer/Ex.AES118/scripts/recon-all.log

To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting

Any help you can provide for troubleshooting would be greatly appreciated.

Daniel Callow

PhD Student, Neuroscience and Cognitive Science

Exercise for Brain Health Lab

University of Maryland, College Park

ddcc2442@gmail.com

443-254-6298