Hey Mr. Greve,

thank your very much again!
if i understand you right, the inside the console shown up values can’t be extracted into a separate file?

beside that, this values are of interest for me, so that i copied them to a text file.
as you can see: Getting Brain Volume Statistics
...
SubCortGMVol  56306.000
SupraTentVol  963813.403 (960508.000) diff=3305.403 pctdiff=0.343
SupraTentVolNotVent  940278.403 (936973.000) diff=3305.403 pctdiff=0.352
BrainSegVol  1109500.000 (1106935.000) diff=2565.000 pctdiff=0.231
BrainSegVolNotVent  1082437.000 (1082065.403) diff=371.597 pctdiff=0.034
BrainSegVolNotVent  1082437.000
CerebellumVol 145310.000
VentChorVol   23535.000
3rd4th5thCSF   3528.000
CSFVol   963.000, 
OptChiasmVol   154.000
MaskVol 1526326.000

am i right that this CSFVol is the Volume of all ventricles not including
the extra cerebral CSF?
i tried to calculate the CSFVol reverse by calculating: VentChorVol - Choroidplexus(2*) = ..and it didn’t fit with the CSFVol?! why this?

and what exactly is the VentChorVol and 3rd4th5thCSF for?

im a bit confused about all this lables and im sorry for asking you so much but i would really appreciate to solve this pity situation.

do you have a kind of an overview?

thank you in advance again,

ben luerweg



Am 11.09.2017 um 22:01 schrieb Douglas N Greve <greve@nmr.mgh.harvard.edu>:



On 09/11/2017 01:20 PM, Benjamin Luerweg wrote:
dear fs community,

as a kind of a freesurfer greenhorn i would kindly ask you to help me
out with identifying the different labels used by freesurfer.
after using mri segstats most of the labels seem to be describing
thereselfs in proper way.

what i don’t understand are for example the different volume values
showing up inside the console after entering the segstat command.

VentChorVol what does this label explain?
Volume of all ventricles plus the volume of the chorioid plexus.

CSFVolwhy is this volume differing to the one within the segstat file?
Volume of all ventricles (not well named because it does not include
extra cerebral CSF)

and finally i would really love to know how to calculate a correct
brain to liquor ratio?!
Do you mean brain volume to total CSF volume? See above


kind regards,
ben


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