Hello Freesurfer,

I am trying to learn freesurfer and ran into the following issues below running the recon -all command. 

FREESURFER_HOME: /Applications/freesurfer

Build stamp: freesurfer-Darwin-lion-stable-pub-v5.3.0

Kernel info: Darwin 14.5.0 x86_64

  1) 

joya

 2) 

 Jasmins-MacBook-Pro:subjects jasminalves$ recon-all -i T1_original_joya.nii -subject joya -all &


3)

[1] 12300 

Jasmins-MacBook-Pro:subjects jasminalves$ mkdir: /Applications/freesurfer/subjects/joya: Permission denied

mkdir: /Applications/freesurfer/subjects/joya/scripts: Permission denied

mkdir: /Applications/freesurfer/subjects/joya/scripts: Permission denied

cp: /Applications/freesurfer/subjects/joya/scripts/build-stamp.txt: No such file or directory

cat: /Applications/freesurfer/subjects/joya/scripts/build-stamp.txt: No such file or directory

INFO: FreeSurfer build stamps do not match

Subject Stamp: 

Current Stamp: freesurfer-Darwin-lion-stable-pub-v5.3.0

INFO: SUBJECTS_DIR is /Applications/freesurfer/subjects

Actual FREESURFER_HOME /Applications/freesurfer

/Applications/freesurfer/subjects/joya: No such file or directory.


[1]+  Exit 1                  recon-all -i T1_original_joya.nii -subject joya -a

Thank you,
Jasmin

Jasmin Alves
Predoctoral Student 
Medical Biology Graduate Program 
University of Southern California