Hi Bruce,

I had earlier written to you with a problem visualizing the flattened lateral section of the cortex, while the flattened medial section was OK. I tried the flattening process on another subject's cortex. This time I could visualise the lateral section but not the medial section. Again the flattening processes were accompanied with no errors.
For the flattening parameters were
Medial: mris_flatten -w 0 size 20
Lateral: mris_flatten -w 0 size 12

I am working on Fedora core 8 using Freesurfer version v4.0.2.

Any idea on what could be wrong ?

Thank you
shriks


----- Original Message ----
From: Bruce Fischl <fischl@nmr.mgh.harvard.edu>
To: SHRIKANTH KULASHEKHAR <contactshriks@yahoo.co.in>
Cc: freesurfer@nmr.mgh.harvard.edu
Sent: Friday, 14 March, 2008 3:21:29 PM
Subject: Re: [Freesurfer] Invisible flattened cortex

what machine type/os are you working on?
On Fri, 14 Mar 2008, SHRIKANTH
KULASHEKHAR wrote:

> Hi Bruce,
>
> This problem is in spite of rotating it. I am sorry I did not mention this in my earlier post.
>
> shriks
>
> ----- Original Message ----
> From: Bruce Fischl <fischl@nmr.mgh.harvard.edu>
> To: SHRIKANTH KULASHEKHAR <contactshriks@yahoo.co.in>
> Cc: freesurfer@nmr.mgh.harvard.edu
> Sent: Friday, 14 March, 2008 3:16:19 PM
> Subject: Re: [Freesurfer] Invisible flattened cortex
>
> Hi Shriks,
>
> try rotating it.
>
> Bruce
> On Fri, 14 Mar 2008, SHRIKANTH KULASHEKHAR wrote:
>
>> Hi,
>>
>> I am trying to flatten the lateral and medial sections of the brain. The flattening processes using
>> mris_flatten -w 0 12  work fine without any errors. And I am able to visualize the flattened medial portion. However, when I load the flattened lateral portion the window is blank with no errors. I can visualize the patch created for the lateral section though.
>>
>> Any ideas on what could be wrong ?
>>
>> Thank you,
>> Shriks
>>
>>
>>
>>
>>      Forgot the famous last words? Access your message archive online at http://in.messenger.yahoo.com/webmessengerpromo.php
>
>
>
>
>
>
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