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you can make individual surface files (mri_binarize --match 16 --i aseg.mgz --surf brainstem.surf --surf-smooth 2), but there is not a registration target to register the surface to

On 5/21/2023 3:41 AM, tulu@ms36.hinet.net wrote:

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Dear Freesurfer experts,

Could I use the brainstem file (brainstemSsLabels.v1x.FSvoxelSpace.mgz) and make it as surface file ? if I have multiple subjects’ file, how to make the average surface file for visualization ?

Sincerely

Jung Lung Hsu
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