Hi there,
We are attempting edits on base images and a couple of questions came up when re-running through the pipeline:
1. After cp, wm, or pial
edits on the base image, is it okay to simply start at ‘-autorecon2’ or must
the specific starting points be used? (ie. “-autorecon2-cp”, “-autorecon2-wm”,
“-autorecon2-pial”).
2. When re-running a base, after edits, starting at
autorecon2, is it necessary to include all the timepoints in the command like
(ie. “-tp subj1 –tp subj2”)? It’d make things simpler if that wasn’t
necessary and our reading of the longitudinal processing protocol seems to suggest all
the “tp” related stuff happens in autorecon1 when the norm image and
transformations are generated. After that, the doc suggests that it simply
processes that averaged image per-usual.
Corrina Fonseca
Staff Research Associate II
Senior Imaging
Technician
Center for Imaging of Neurodegenerative Diseases
San Francisco VA Medical Center
4150 Clement Street (114M)
San Francisco, CA 94121
http://www.radiology.ucsf.edu/cind
(415) 221-4810 x23088