Hi Bruce,

Thanks for the reply.

By "coordinates" I mean all the voxels that belong to a certain structure. I think it's called "labels"? I interest in the main structures like Hippocampus, Thalamus, Cerebellum, Amygdala, corpus callosum, etc. If the standard segmentation segments in that specificity only the lobes, it can be good enough...

I see the .mgz files, but can not extract them... How should I do that?

Thank for the patience..

Adiel

2017-07-23 18:09 GMT+03:00 Bruce Fischl <fischl@nmr.mgh.harvard.edu>:

Hi Adiel

what kind of coordinates do you mean, and which brain structures are you interested in? Our standard segmentation is sampled into the volume in files named aparc*+aseg.mgz, but the Brodmann area estimates are on the surface.

cheers
Bruce

On Sun, 23 Jul 2017, עדיאל חרבש wrote:

Hi,
I'm very new to Freesurfer, and actually work with some exist results of
other people. The results are from the call of "-recon all -autorun".
I try to get all the coordinates of each of the structures of the brain,
that segmented. I can find on files only the volumes of some structures and
something that look like detailed coordinates of Brodman Areas only. But I
can't find the detailed coordinates of all structures in brain.

I'll be grateful if someone can guide me where can I find it, or what should
I do to get these results.

Thanks,
Adiel

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.