On Oct 1, 2021, at 15:51, Camila Fernandes da Silva <camila.fernandes.silva@usp.br> wrote:

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Hey, 

I'm totally new into Freesurfer and I need some help with my Matlab.

I tried to do "recon-all -s <.....>/ -lgi 

But as you can see, It shows an error related to matlab...

I tried everything! But nothing is working.

I have heard that we should modify the startup.m file...

But, what am I supposed to do with it?

I'm using the Freesurfer 7.1.0 version

-----------------------------------------------------------------------

#@# Local Gyrification Index lh Fri Oct  1 15:25:01 EDT 2021

 mris_compute_lgi --i lh.pial 

matlab: Command not found.
matlab5: Command not found.
ERROR: Matlab is required to run mris_compute_lgi!
Command exited with non-zero status 1
@#@FSTIME  2021:10:01:15:25:01 mris_compute_lgi N 2 e 0.01 S 0.00 U 0.01 P 94% M 2784 F 0 R 736 W 0 c 11 w 15 I 0 O 0 L 0.05 0.12 0.10
@#@FSLOADPOST 2021:10:01:15:25:01 mris_compute_lgi N 2 0.05 0.12 0.10
Linux developer-VirtualBox 5.4.0-87-generic #98~18.04.1-Ubuntu SMP Wed Sep 22 10:45:04 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux

recon-all -s controle01_T1 exited with ERRORS at Fri Oct  1 15:25:01 EDT 2021

For more details, see the log file /home/developer/freesurfer/controle01_T1/scripts/recon-all.log
To report a problem, see MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting

-- 

Atenciosamente,

Camila Fernandes
Licenciatura em Física - IFUSP

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