And is this version 6 or 5.3?


On 05/23/2017 08:21 AM, miracle ozzoude wrote:
> Hello Bruce,
> So far, I have only encountered this error in 2/147 of my subjects.
> Best,
> Paul
>
> On Mon, May 22, 2017 at 11:00 AM, Douglas N Greve
> <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> wrote:
>
>     Hi Paul, are you using version 6? Is this happening on more than one
>     subject or is this subject an outlier?
>
>
>
>     On 05/19/2017 10:28 AM, Bruce Fischl wrote:
>     > Hi Paul
>     >
>     > you need to look at the rh.orig.nofix and rh.inflated.nofix.
>     Typically
>     > something big is wrong like skull attached to brain or something
>     >
>     > cheers
>     > Bruce
>     >
>     >
>     > On Fri, 19 May 2017, miracle ozzoude wrote:
>     >
>     >> Hello Freesurfer expert, While running recon-all on one of my
>     >> subjects, the
>     >> pipeline got stuck during the "fix topology rh" stage for almost
>     >> 12hrs. How
>     >> do I diagnosis the problem and fix it? I have attached the
>     recon-all.log
>     >> file. Thank you
>     >> Best,
>     >> Paul
>     >>
>     >>
>     >
>     >
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

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