Dear Fernando,
Are you using the MAC version? I haven’t finished fixing the bugs in that one yet.
If you’re using the Linux version: Zeke, can you please shed some light on what the problem might be? 
Cheers,
Eugenio



Juan Eugenio Iglesias
Translational Imaging Group
University College London
http://www.jeiglesias.com
http://cmictig.cs.ucl.ac.uk/


On 14 Jul 2016, at 08:57, Fernando Pérez-García <fepegar@gmail.com> wrote:

Dear Eugenio,

I'm still having this issue, even after downloading the latest development version from the website as you suggested. My steps (yesterday):
  1. Download and install FS (dev version)
  2. Run recon-all
  3. Download and install Matlab runtime
  4. Run recon-all with brainstem structures
I get the following error:

Error:Cannot find CTF archive /usr/local/freesurfer/bin/SegmentSubject.bin.ctf


Should I try the same steps again today?


Best,

Fernando