External Email - Use Caution        

Dear Freesurfer Experts,

I did group-level analysis in MNI305 space.  Then I output the summay via command 'mri_volcluster' as follows:

mri_volcluster --in ./sig.nii.gz  --thmin ${thvoxel} --sign ${sigsignTemp} --cwpvalthresh 0.05 --minsize 273 --fwhm 6 --no-adjust --sum ${nameout}.cluster.summary --out ${nameout}.cluster.nii.gz --ocn ${nameout}.ocn.nii.gz --labelbase $Dir_Subj_fMRI/$out_dir_group/$analysis/$contrast/label_${nameout}/label --mask /mnt/hgfs/G/work/MetaCog/Human/subjects/fsaverage/mri.2mm/subcort.mask.mgz

the output is as follows. there are no ROI names in the table. Is it because I missed the option '--reg' in the command line? Which register file shoul I use if I should add it? I can't find the 'register.dat' file in fsaverage folder. 

Very appricated if you can help me. 

Best,

zhiwei 

-------------------------------------------------------------

# Reporting Coordinates in Voxel Indices

# Cluster   Size(n)   Size(mm^3)     VoxX    VoxY    VoxZ             Max     GRFCWP

  1         5270       42160.0      33.00   35.00   60.00           6.04524  0.0000001

  2         1995       15960.0      15.00   65.00   24.00           4.32869  0.0008543

  3         1429       11432.0      51.00   64.00   17.00           3.72032  0.0036314

  4          690        5520.0      55.00   56.00   49.00          -3.22358  0.0488862

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer