Yes, I used the dicom to run recon-all. <div><br></div><div>I converted the results back to native space, using<div><br></div><div> mri_convert -rl orig/001.mgz XX.mgz XX_native.mgz
</div><div><br></div><div>the images in the native space are not in the same orientation as 001.mgz, which i got from the dicoms.</div></div>