Hello,

I have a question about propagating changes to segmentation. Once I have saved my edits what is the appropriate command to propagate these changes for both cortical and subcortical changes that I have made. 

The workflow instructs that after segmentation edits are made to run

 -normalization -maskbfs -segmentation -autorecon2-wm -autorecon3 to the wm.mgz file. However the instructions indicate to open brainmask.mgz to make edits.  Should I make changes on the wm.mgz file?

Any clarification on this topic would be much appreciated.


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Liane Hunter
MD/Ph.D Candidate
Albert Einstein College of Medicine