Dear Experts,

I was wondering if someone might be able to help me understand what the difference is between the two commands below. It seems that they can be used interchangeably, because I can forsee a situation in which one might not remember which command to run and also have done several types of corrections. Or would the former (-make) method only work on with 1 edits?

Thanks,

Arkadiy

If you cannot remember which command to run, use the -make flag. Recon-all will automatically begin at whichever point in the processing stream you made your edits.

recon-all -make all -subjid <subject>

If you have corrected several types of errors, it is recommended that you re-run recon-all from the beginning, to ensure that none of your edits were left out. (Running from autorecon1 will not save you much time)

recon-all -all -subjid <subject>

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Arkadiy L. Maksimovskiy, Ph.D.

Postdoctoral Research Fellow
McLean Imaging Center, McLean Hospital
Department of Psychiatry, Harvard Medical School