How does it look in tksurfer?
On 01/04/2016 03:29 PM, Mihaela Stefan wrote:
> Hi Doug,
>
> I am going back to this old email.
> I was able to brake the annot file into separate labels and I created
> a new annotation file with only the labels that I was interested in.
> However, the inflated surface disappears when I upload my own
> annotation in freeview. Only the labels are shown (see attachment). If
> I select "show outline only", then the inflated surface remains
> displayed. How can I keep the inflated surface displayed while I am
> loading the annotation file?
>
> On a different note, I could upload multiple labels in the same time
> in freeview in the past. Now I can only upload one label at the time.
> I wonder if there is some setting that I am missing.
>
> Thanks!
> Mihaela
>
> On Wed, Oct 28, 2015 at 1:29 PM, Douglas N Greve
> <mailto:Freesurfer@nmr.mgh.harvard.edu>> <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> wrote:
>
> Break up the annot into separate labels then recombine the ones
> you want
> into a new annotation. Use mri_annotation2label for the first step
> then
> mris_label2annot for the second.
>
>
> On 10/27/2015 02:35 PM, Mihaela Stefan wrote:
> > Hello Freesurfers,
> >
> > I would like to be able to display just a few parcels from the
> Desikan
> > atlas on the fsaverage inflated surface. For example, I would
> like to
> > display only the superiorfrontal and the posteriorcingulate. I tried
> > to recreate the parcels myself by drawing labels, but they don't
> look
> > pretty (see the attachment).
> > I traced the labels in qdec (based on the Annotation/Opacity
> tab) and
> > then I mapped them to fsaverage and visualized them with freeview.
> >
> > There's probably a better way to do that but I couldn't figure
> it out.
> > Can anyone help me with this?
> >
> > Thanks!
> > Mihaela
> >
> >
> >
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>
> --
> Douglas N. Greve, Ph.D.
> MGH-NMR Center
> greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
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> Fax: 617-726-7422 <tel:617-726-7422>
>
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
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