psylab-desktop:/media/freesurfer1/CT> tksurfer fsaverage rh inflated -annot aparc.annot -fthresh 2 -overlay lh.COMTthree.glmdir/COMTthree/sig.mgh
setting fthresh to 2.0000
subject is fsaverage
hemi is rh
surface is inflated
surfer: current subjects dir: /media/freesurfer1/CT
surfer: not in "scripts" dir ==> using cwd for session root
surfer: session root data dir ($session) set to:
surfer: /media/freesurfer1/CT
checking for nofix files in 'inflated'
Reading image info (/media/freesurfer1/CT/fsaverage)
Reading /media/freesurfer1/CT/fsaverage/mri/orig.mgz
surfer: Reading header info from /media/freesurfer1/CT/fsaverage/mri/orig.mgz
surfer: vertices=163842, faces=327680
tkmedit: Trying to open lh.COMTthree.glmdir/COMTthree/sig.dat
surfer: Interpreting overlay volume lh.COMTthree.glmdir/COMTthree/sig.mgh as encoded scalar volume.
surfer: curvature read: min=-0.676989 max=0.486764
reading colortable from annotation file...
colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt)
Found embedded color table in annotation.
13916 vertices did not have an annotation!
surfer: single buffered window
surfer: tkoInitWindow(fsaverage)
surfer: using interface /usr/local/freesurfer/tktools/tksurfer.tcl
Reading /usr/local/freesurfer/tktools/tkm_common.tcl
Reading /usr/local/freesurfer/tktools/tkm_wrappers.tcl
Reading /usr/local/freesurfer/lib/tcl/fsgdfPlot.tcl
Reading /usr/local/freesurfer/tktools/tkUtils.tcl
Successfully parsed tksurfer.tcl
reading white matter vertex locations...
% -----------------------------------
selected vertex 57932 out of 163842
current 40.12 -7.05 -49.24
orig 63.86 -19.65 -15.51
pial 0.00 0.00 0.00
white 64.69 -19.40 -15.31
inflated 0.00 0.00 0.00
normals 0.99 0.01 -0.16
nneighbors 6
ripflag 0
surfer: dmin=0.4857, vno=57932, x=40.1208, y=-7.0543, z=-49.2368
surfer: curv=-0.308152, fs=0.000000
surfer: val=3.228469, val2=0.000000
surfer: amp=3.228469, angle=0.000000 deg (0.000000)
surfer: vertex 57932 marked (curv=-0.308152, stat=3.228469)
x = (40.1, -7.1, -49.2), n = (1.0, 0.0, -0.2).
-----------------------------------
selected vertex 17616 out of 163842
current 39.62 -2.00 -51.33
orig 62.97 -16.28 -16.81
pial 0.00 0.00 0.00
white 63.84 -15.82 -16.46
inflated 0.00 0.00 0.00
normals 0.98 0.05 -0.18
nneighbors 6
ripflag 0
surfer: dmin=0.3911, vno=17616, x=39.6229, y=-2.0015, z=-51.3347
surfer: curv=-0.321697, fs=0.000000
surfer: val=3.037957, val2=0.000000
surfer: amp=3.037957, angle=0.000000 deg (0.000000)
surfer: vertex 17616 marked (curv=-0.321697, stat=3.037957)
x = (39.6, -2.0, -51.3), n = (1.0, 0.0, -0.2).
-----------------------------------
selected vertex 17616 out of 163842
current 39.62 -2.00 -51.33
orig 62.97 -16.28 -16.81
pial 0.00 0.00 0.00
white 63.84 -15.82 -16.46
inflated 0.00 0.00 0.00
normals 0.98 0.05 -0.18
nneighbors 6
ripflag 0
surfer: dmin=0.3911, vno=17616, x=39.6229, y=-2.0015, z=-51.3347
surfer: curv=-0.32
1697, fs=0.000000
surfer: val=3.037957, val2=0.000000
surfer: amp=3.037957, angle=0.000000 deg (0.000000)
-----------------------------------
selected vertex 57937 out of 163842
current 39.67 -5.70 -51.49
orig 63.13 -18.77 -17.53
pial 0.00 0.00 0.00
white 63.95 -18.47 -17.49
inflated 0.00 0.00 0.00
normals 0.97 -0.00 -0.23
nneighbors 6
ripflag 0
surfer: dmin=0.1531, vno=57937, x=39.6731, y=-5.6965, z=-51.4914
surfer: curv=-0.157153, fs=0.000000
surfer: val=3.481167, val2=0.000000
surfer: amp=3.481167, angle=0.000000 deg (0.000000)
surfer: vertex 57937 marked (curv=-0.157153, stat=3.481167)
x = (39.7, -5.7, -51.5), n = (1.0, -0.0, -0.2).
-----------------------------------
selected vertex 57939 out of 163842
current 39.54 -5.36 -52.05
orig 62.77 -18.73 -18.05
pial 0.00 0.00 0.00
white 63.56 -18.47 -18.09
inflated 0.00 0.00 0.00
normals 0.97 -0.01 -0.25
nneighbors 6
ripflag 0
surfer: dmin=0.2759, vno=57939, x=39.5351, y=-5.3601, z=-52.0518
surfer: curv=-0.129672, fs=0.000000
surfer: val=3.159937, val2=0.000000
surfer: amp=3.159937, angle=0.000000 deg (0.000000)
surfer: vertex 57939 marked (curv=-0.129672, stat=3.159937)
x = (39.5, -5.4, -52.1), n = (1.0, -0.0, -0.3).
-----------------------------------
selected vertex 11634 out of 163842
current 39.74 -8.26 -51.06
orig 62.85 -20.64 -17.51
pial 0.00 0.00 0.00
white 63.51
-20.49 -17.63
inflated 0.00 0.00 0.00
normals 0.97 -0.03 -0.24
nneighbors 6
ripflag 0
surfer: dmin=0.3010, vno=11634, x=39.7392, y=-8.2621, z=-51.0574
surfer: curv=-0.097159, fs=0.000000
surfer: val=3.183451, val2=0.000000
surfer: amp=3.183451, angle=0.000000 deg (0.000000)
surfer: vertex 11634 marked (curv=-0.097159, stat=3.183451)
x = (39.7, -8.3, -51.1), n = (1.0, -0.0, -0.2).
surfer: making path (ctrl-c to cancel)... done
At 2012-11-16 22:07:16,"Bruce Fischl" <fischl@nmr.mgh.harvard.edu> wrote:
>can you respond to the list? Not sure what's going on...
>Bruce
>
>
>On Fri, 16 Nov 2012, xiangbo_2010 wrote:
>
>>
>> Thank you for my reply, when I check the button, the points have no change.
>> Before check the button, these points are white, and have no bright colors,
>> Thanks!
>>
>>
>>
>>
>> At 2012-11-16 21:58:28,"Bruce Fischl" <fischl@nmr.mgh.harvard.edu> wrote:
>> >sorry, not sure I understand. After you click "make closed fill boundary"
>> >what happens? Before you click do you see the points hilighted on the
>> >surface?
>> >On Fri, 16 Nov 2012, xiangbo_2010 wrote:
>> >
>> >> Dear experts:
>> >> I used the http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial
>> /Visualization?highligh
>> >> t=%28ROI%29 to defining a region of interest, but when I make a series of
>> >> left clicks on the surface? then click the "Make Closed Fill Boundary" i
>> con
>> >> in the tools window. howevre, there has no connect the points my
>> >> clicked, and drawing a yellow or red line between them. I hope that have
>> >> experts to help me. Thanks!
>> >>
>> >>
>> >>
>> >> Bo Xiang
>> >>
>> >>
>> >>
>> >>
>>
>>
>>
>>
>
>
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