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Thanks Andrew. I have done that twice now...

On Sat, Aug 11, 2018 at 10:21 AM, Hoopes, Andrew <AHOOPES@mgh.harvard.edu> wrote:

Hi K, your original error is usually due to an incomplete download. You might want to try redownloading and untaring again

Best,

Andrew

 

From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Schumman Resonance <schummanr@gmail.com>
Reply-To: FS Help <freesurfer@nmr.mgh.harvard.edu>
Date: Saturday, August 11, 2018 at 9:24 AM
To: FS Help <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Untar and sh files in dev version

 

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Thanks for your response, but I already have the stable release version in another system.

What I'd like to do now is to run the development version.

Thanks,

K

 

 

On Sat, Aug 11, 2018 at 1:22 AM, Dicamillo, Robert <RDICAMILLO@mgh.harvard.edu> wrote:

Hello K,

 

Can you try downloading the 6.0.0 release archive from the web site (please note it is 4.8G),

 

 

Then you will need 5 GB of space to uncompress it.  I would add the v option so you can see the expansion in progress,

 

$ tar zxvpf  freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz

 

- Rob

 

 

On Aug 11, 2018, at 2:55 AM, Schumman Resonance <schummanr@gmail.com> wrote:

 

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Thanks for your response.

I run the command you suggested and this is what I got:

freesurfer/average/mult-comp-cor/fsaverage_sym/rh/cortex/fwhm04/pos/th33/mc-z.csd: (Empty error message)

tar: Error exit delayed from previous errors.

 

Also, still no .sh files...

 

Best,

K

 

On Fri, Aug 10, 2018 at 7:52 PM, Dicamillo, Robert <RDICAMILLO@mgh.harvard.edu> wrote:

Hello Schumman,

 

Try the following command on the tar archive (cut and paste it if you like)

 

$ tar zxpf freesurfer-linux-centos6_x86_64-dev.tar.gz

 

and then take a look at the files.

 

- Rob

 

On Aug 10, 2018, at 10:25 PM, Schumman Resonance <schummanr@gmail.com> wrote:

 

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Hi,

 

Couple of newbie questions. I downloaded the dev version of freesurfer  and did:

tar xvzf 

freesurfer-linux-centos6_x86_64-dev.tar.gz



to get





gzip: stdin: unexpected end of file

tar: Unexpected EOF in archive

tar: Unexpected EOF in archive

tar: Error is not recoverable: exiting now

 

 



Also, when I ls the folder I couldn't see the SetUpFreesurfer.sh and SurferEnv.sh only the csh files.



Any pointers how to solve these would be appreciated.



Thanks,

S

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The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
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but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

 


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The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.