I think this problem is fixed in version 6. You can download version 6
and use the v6 mri_convert to convert the file. The converted file
should be readable by v5 (I think).


On 03/06/2017 04:14 PM, Dhaval Shah wrote:
> Hi Bruce,
>
> Thank you for your prompt e-mail. I have attached here the recon-all.log.
>
> The mri_info command gives me the same error message as i mentioned
> before. Thank you for your help.
>
> On Mon, Mar 6, 2017 at 2:54 PM, Bruce Fischl

> <fischl@nmr.mgh.harvard.edu <mailto:fischl@nmr.mgh.harvard.edu>> wrote:
>
>     HI Dhaval
>
>     can you send us the full command line, screen output and
>     recon-all.log? Also: what does mri_info tell you when run on that
>     file?
>
>     cheers
>     Bruce
>
>     On Mon, 6 Mar 2017, Dhaval Shah wrote:
>
>         Hi all,
>
>         i am having problem with recon-all function. Whenever i call
>         that function from a terminal
>         with my high resolution Nifti file ("MPRAGE.nii") it aborts
>         with an error: "nifti1Read():
>         unsupported slice Timing  pattern in ..."path to file".
>
>         Can some one please help? I need to generate Labels from this
>         NIFTI file
>
>         --
>         Kind regards,
>         Dhaval Shah
>
>         MRI Research fellow,MRI Physicist,Clinical Trial Research Staff
>         Buffalo Neuroimaging Analysis Center
>         State University of New York at Buffalo
>         Department of Neurology
>         100 High St., D-2, Buffalo, NY 14203

>         *MailScanner has detected a possible fraud attempt from
>         "dshah@bnac.net" claiming to be* *MailScanner has detected a
>         possible fraud attempt from "dshah@bnac.net" claiming to be*
>         MailScanner has detected a possible fraud attempt from "dshah@bnac.net" claiming to be dshah@bnac.net//http://mbl.bnac.net
>         <http://dshah@bnac.net//http://mbl.bnac.net>
>
>
>     _______________________________________________
>     Freesurfer mailing list
>     Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>
>     https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
>
>
>     The information in this e-mail is intended only for the person to
>     whom it is
>     addressed. If you believe this e-mail was sent to you in error and
>     the e-mail
>     contains patient information, please contact the Partners
>     Compliance HelpLine at
>     http://www.partners.org/complianceline
>     <http://www.partners.org/complianceline> . If the e-mail was sent
>     to you in error
>     but does not contain patient information, please contact the
>     sender and properly
>     dispose of the e-mail.
>
>
>
>
> --
> Kind regards,
> Dhaval Shah
> MRI Research fellow,MRI Physicist,Clinical Trial Research Staff
> Buffalo Neuroimaging Analysis Center State University of New York at
> Buffalo Department of Neurology 100 High St., D-2, Buffalo, NY 14203
> dshah@bnac.net <mailto:dshah@bnac.net>//http://mbl.bnac.net
>
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer