Alexandru Hanganu <al.hanganu@yahoo.ca> wrote:

Dear Freesurfer Experts,

While performing the long_mris_slopes cmd, we receive an error:


SUBJECT pls_pd_base00  Running Within-Subject GLM

Writing ./tmp-pls_pd_base00_lh_thickness_Rx7HLs/X-long.mat ...

mri_glmfit --y 
/Applications/freesurfer/subjects/pls_pd_base00/surf/lh.long.thickness-stack.mgh 
--X ./tmp-pls_pd_base00_lh_thickness_Rx7HLs/X-long.mat --allow-zero-dof 
--no-contrasts-ok --surf pls_pd_base00 lh --label 
/Applications/freesurfer/subjects/pls_pd_base00/label/lh.long.cortex.label 
--glmdir ./tmp-pls_pd_base00_lh_thickness_Rx7HLs/glm

Traceback (most recent call last):
File "/Applications/freesurfer/bin/long_mris_slopes", line 732, in 
<module>
run_cmd(cmd,'mri_glmfit did not work?')
File "/Applications/freesurfer/bin/long_mris_slopes", line 422, in 
run_cmd
retcode = subprocess.call(args)
File 
"/System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/subprocess.py", 
line 443, in call
return Popen(*popenargs, **kwargs).wait()
File 
"/System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/subprocess.py", 
line 593, in __init__
errread, errwrite)
File 
"/System/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/subprocess.py", 
line 1079, in _execute_child
raise child_exception
OSError: [Errno 8] Exec format error


we changed the mris_calc and mri_glmfit files with the new ones (8.2MB / 
15.8MB).

Can you please help with this ?

Thank you in advance,

Sincerely,
Alex.


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