please remember to post to the list ...

Run

tkregister --mov negative_allsocial_proportion.nii --regheader --reg deleteme.lta --s collin --surfs

where collin is the name of the subject you gave when you analyzed the collin brain in recon-all.

If this looks like it is in register, then using --regheader with mri_vol2surf should work. If it is not, then

tkregister --mov negative_allsocial_proportion.nii --identity --reg identity.lta --s collin --surfs

If that looks ok, then save the registration and use that when running mri_vol2surf


On 4/20/18 3:48 PM, srishti goel wrote:

        External Email - Use Caution        

Hi Douglas,

Following up on where I left, our maps (negative_allsocial_proportion.nii) were created using neuroelf software and can be viewed in neuroelf on the Colins template (colin_brain_ICBMnorm.vmr). I exported this template as a nifti file and did recon-all for this file but I am still stuck with the same issue. I can run mri_vol2surf on our maps using the colins template but then how do I compare the maps that I am trying to compare because the other map in on the surface of MNI template in FS. I want to be able to produce the two maps on the same surface.

Please let me know if you have thoughts about it.

Thanks so much!

Best,
Srishti
Social/Clinical Research Specialist
Child Imaging Research and Life Experiences Lab
University of North Carolina at Chapel Hill
skype: srishti.goel12


On Thu, Apr 12, 2018 at 10:51 AM, Douglas N. Greve <dgreve@mgh.harvard.edu> wrote:
Hi Srishti, you will need to be much more specific to allow me to help you. mni152_subject is not a file that can be input to recon-all (it should be a dicom or nifti or mgz). If you use the same input to recon-all that you used to view it in spm, then the FS output should align with your map.


On 04/12/2018 10:41 AM, srishti goel wrote:
mni152_subject is the file that has been used for recon-all. Our collaborators had run recon-all with that file so we did not do it again. As far as the 'MNI template' is concerned, I didn't do that part of the analysis so I am unsure which specific file it is, but it MNI 152.

Best,
Srishti
Social/Clinical Research Specialist
Child Imaging Research and Life Experiences Lab
University of North Carolina at Chapel Hill
 email (W): srishtig@email.unc.edu <mailto:srishtig@email.unc.edu>
skype: srishti.goel12


 On Thu, Apr 12, 2018 at 10:28 AM, Douglas N. Greve <dgreve@mgh.harvard.edu <mailto:dgreve@mgh.harvard.edu>> wrote:

    What is the "MNI template" that you are using. I mean an exact file
    used. Did you use this file when you ran recon-all?


    On 04/12/2018 10:23 AM, srishti goel wrote:
    > Yeah, I am unsure where to go from here as well. So the results
    can be
    > viewed in SPM and on the MNI template space itself, since SPM
    > typically does not have a problem showing multiple images in
    different
    > sizes.
    >
    > Best,
    > Srishti
    > Social/Clinical Research Specialist
    > Child Imaging Research and Life Experiences Lab
    > University of North Carolina at Chapel Hill
    > email (W): srishtig@email.unc.edu
     <mailto:srishtig@email.unc.edu> <mailto:srishtig@email.unc.edu
    <mailto:srishtig@email.unc.edu>>
    > skype: srishti.goel12
    >
    >
     > On Thu, Apr 12, 2018 at 10:11 AM, Douglas N. Greve
    > <dgreve@mgh.harvard.edu <mailto:dgreve@mgh.harvard.edu>
     <mailto:dgreve@mgh.harvard.edu <mailto:dgreve@mgh.harvard.edu>>>
    wrote:
    >
    >     When you use bbregister, it is expecting the input nii file to
    >     represent
    >     the actual anatomy of the subject, so it does not surprise
    me that it
    >     does not work that well. I'm not sure what to do about this
    because a
    >     meta analysis image will never have decent anatomy. In
    theory, it
    >     should
    >     be already in alignment with the mni152, but this is
    trickier than it
    >     seems. How do you usually view the results? In FSL or SPM?
    Do you view
    >     them on an anatomical image?
    >
    >
    >     On 04/12/2018 09:03 AM, srishti goel wrote:
    >     > Hi Douglas,
    >     >
    >     > The negative_allsocial_proportion.nii file has actually been
    >     converted
    >     > from a vmp file - 'negative_allsocial.vmp'. We used
    neruoelf to
    >     > convert the vmp file, option - 'export to analze' and
    'export to
    >     > nifti'. The original vmp file represent the results of a
    >     meta-analysis.
    >     >
    >     > Let me know if that helps or you would need more information.
    >     >
    >     > Thanks!
    >     >
    >     > Best,
    >     > Srishti
    >     >
    >     > Best,
    >     > Srishti
    >     > Social/Clinical Research Specialist
    >     > Child Imaging Research and Life Experiences Lab
    >     > University of North Carolina at Chapel Hill
    >     > email (W): srishtig@email.unc.edu
    <mailto:srishtig@email.unc.edu>
    >     <mailto:srishtig@email.unc.edu
    <mailto:srishtig@email.unc.edu>> <mailto:srishtig@email.unc.edu
    <mailto:srishtig@email.unc.edu>
    >     <mailto:srishtig@email.unc.edu <mailto:srishtig@email.unc.edu>>>

    >     > skype: srishti.goel12
    >     >
    >     >
    >     > On Wed, Apr 11, 2018 at 11:30 PM, Douglas Greve
    >     > <dgreve@mgh.harvard.edu <mailto:dgreve@mgh.harvard.edu>
    <mailto:dgreve@mgh.harvard.edu <mailto:dgreve@mgh.harvard.edu>>
    >     <mailto:dgreve@mgh.harvard.edu
    <mailto:dgreve@mgh.harvard.edu> <mailto:dgreve@mgh.harvard.edu
    <mailto:dgreve@mgh.harvard.edu>>>>
    >     wrote:
    >     >
    >     >     how was negative_allsocial_proportion.nii created?
    >     >
    >     >
    >     >     On 4/11/18 9:14 PM, srishti goel wrote:
    >     >>     Hi,
    >     >>
    >     >>     I used bbregister to register:
    >     >>     bbregister --mov negative_allsocial_proportion.nii --s
    >     >>     mni152_subject --bold --lta register.lta
    >     >>     and then viewed it using:
    >     >>     tkregisterfv --mov negative_allsocial_proportion.nii
    --reg
    >     >>     register.lta --surfs
    >     >>     It doesn't look great but it still looks okay (Screenshot
    >     attached).
    >     >>     Then I also used lta in tkregisterfv, as:
    >     >>     tkregisterfv --mov negative_allsocial_proportion.nii
    --reg
    >     >>     register.lta --s mni152_subject --surfs --reg
    reg.deleteme.dat
    >     >>     In this file, the volume map still lies outside the
    surface.
    >     >>     Could you please help me resolve this issue.
    >     >>     I tried using register.lta file in the mri_vol2surf
    but the
    >     >>     overlay map doesn't show up again.
    >     >>     Thanks!
    >     >>
    >     >>     Best,
    >     >>     Srishti
    >     >>     Social/Clinical Research Specialist
    >     >>     Child Imaging Research and Life Experiences Lab
    >     >>     University of North Carolina at Chapel Hill
    >     >>     email (W): srishtig@email.unc.edu
    <mailto:srishtig@email.unc.edu>
    >     <mailto:srishtig@email.unc.edu
    <mailto:srishtig@email.unc.edu>> <mailto:srishtig@email.unc.edu
    <mailto:srishtig@email.unc.edu>
    >     <mailto:srishtig@email.unc.edu <mailto:srishtig@email.unc.edu>>>
    >     >>     skype: srishti.goel12
    >     >>
    >     >>
    >     >>     On Tue, Apr 10, 2018 at 11:50 PM, Douglas Greve
    >     >>     <dgreve@mgh.harvard.edu
    <mailto:dgreve@mgh.harvard.edu> <mailto:dgreve@mgh.harvard.edu
    <mailto:dgreve@mgh.harvard.edu>>
     >     <mailto:dgreve@mgh.harvard.edu
    <mailto:dgreve@mgh.harvard.edu> <mailto:dgreve@mgh.harvard.edu
    <mailto:dgreve@mgh.harvard.edu>>>>
    >     wrote:
    >     >>
    >     >>         don't use --init-rr ( you don't need to spec an
    init in
    >     >>         version 6)
    >     >>
    >     >>
    >     >>         On 4/10/18 9:48 PM, srishti goel wrote:
    >     >>>         When I run bbregister, it gives me an error.
    Attached
    >     is the
    >     >>>         register.dat.log file for it.
    >     >>>         Error:
    >     >>>
    >     >>>         reading source
    './tmp.bbregister.91068/template.nii'...
    >     >>>
    >     >>>         mri_robust_register.bin: only pass single frame
    MRI source
    >     >>>         ./tmp.bbregister.91068/template.nii.
    >     >>>
    >     >>>
    >     >>>         No such file or directory
    >     >>>
    >     >>>
    >     >>>         Any help is greatly appreciated!
    >     >>>
    >     >>>
    >     >>>         Best,
    >     >>>         Srishti
    >     >>>         Social/Clinical Research Specialist
    >     >>>         Child Imaging Research and Life Experiences Lab
    >     >>>         University of North Carolina at Chapel Hill
    >     >>>         email (W): srishtig@email.unc.edu
    <mailto:srishtig@email.unc.edu>
    >     <mailto:srishtig@email.unc.edu <mailto:srishtig@email.unc.edu>>
    >     >>>         <mailto:srishtig@email.unc.edu
    <mailto:srishtig@email.unc.edu>
    >     <mailto:srishtig@email.unc.edu <mailto:srishtig@email.unc.edu>>>
    >     >>>         skype: srishti.goel12
    >     >>>
    >     >>>
    >     >>>         On Tue, Apr 10, 2018 at 11:07 AM, Douglas Greve
    >     >>>         <dgreve@mgh.harvard.edu
    <mailto:dgreve@mgh.harvard.edu> <mailto:dgreve@mgh.harvard.edu
    <mailto:dgreve@mgh.harvard.edu>>
     >     <mailto:dgreve@mgh.harvard.edu
    <mailto:dgreve@mgh.harvard.edu> <mailto:dgreve@mgh.harvard.edu
     <mailto:dgreve@mgh.harvard.edu>>>>
    >     wrote:
    >     >>>
    >     >>>             They are not in registration. Try running
    >     bbregister to
    >     >>>             create a registration file (lta), then pass
    the lta to
    >     >>>             tkregisterfv instead of --regheader
    >     >>>
    >     >>>
    >     >>>             On 4/9/18 11:49 PM, Bruce Fischl wrote:
    >     >>>>             How did you generate the registration? And give
    >     us the
    >     >>>>             details of what you are trying to register
    >     >>>>             Cheers
    >     >>>>             Bruce
    >     >>>>
    >     >>>>             On Apr 8, 2018, at 2:55 PM, srishti goel
    >     >>>>             <23srishtigoel@gmail.com
    <mailto:23srishtigoel@gmail.com>
    >     <mailto:23srishtigoel@gmail.com
    <mailto:23srishtigoel@gmail.com>>
    >     >>>>            <mailto:23srishtigoel@gmail.com
    <mailto:23srishtigoel@gmail.com>
     >     <mailto:23srishtigoel@gmail.com <mailto:23srishtigoel@gmail.com>>>> wrote:
    >     >>>>
    >     >>>>>             Hi Bruce,
    >     >>>>>
    >     >>>>>             Thanks so much for pointing that out, I
    totally
    >     missed
    >     >>>>>             that part.
    >     >>>>>
    >     >>>>>             Also, the registration definitely isn't
    appropriate.
    >     >>>>>             Could someone please guide me how to
    correct this
    >     >>>>>             problem. I have attached a screenshot of
    how it
    >     looks
    >     >>>>>             like currently.
    >     >>>>>
    >     >>>>>
    >     >>>>>             <Screen Shot 2018-04-08 at 2.53.33 PM.png>
    >     >>>>>
    >     >>>>>             Best,
    >     >>>>>             Srishti
    >     >>>>>             Social/Clinical Research Specialist
    >     >>>>>             Child Imaging Research and Life
    Experiences Lab
    >     >>>>>             University of North Carolina at Chapel Hill
    >     >>>>>             email (W): srishtig@email.unc.edu
    <mailto:srishtig@email.unc.edu>
    >     <mailto:srishtig@email.unc.edu <mailto:srishtig@email.unc.edu>>
     >     >>>>>             <mailto:srishtig@email.unc.edu
    <mailto:srishtig@email.unc.edu>
    >     <mailto:srishtig@email.unc.edu <mailto:srishtig@email.unc.edu>>>

    >     >>>>>             skype: srishti.goel12
    >     >>>>>
    >     >>>>>
    >     >>>>>             On Sun, Apr 8, 2018 at 11:00 AM, Bruce Fischl
    >     >>>>>             <fischl@nmr.mgh.harvard.edu
    <mailto:fischl@nmr.mgh.harvard.edu>
    >     <mailto:fischl@nmr.mgh.harvard.edu
    <mailto:fischl@nmr.mgh.harvard.edu>>
    >     >>>>>  <mailto:fischl@nmr.mgh.harvard.edu
    <mailto:fischl@nmr.mgh.harvard.edu>
    >     <mailto:fischl@nmr.mgh.harvard.edu
    <mailto:fischl@nmr.mgh.harvard.edu>>>> wrote:
    >     >>>>>
    >     >>>>>                 Hi Srishti
    >     >>>>>
    >     >>>>>                 the directory you are in doesn't
    matter. YOu
    >     >>>>>                 either need to set SUBJECTS_DIR in the
    >     >>>>>  environment, or use --sd <SUBJECTS_DIR> to
    >     specify the
    >     >>>>>                 directory that contains your subjects. I
    >     think you
    >     >>>>>                 can also give it the full path to a target
    >     volume
    >     >>>>>                 if you want, but maybe Doug can
    comment as he
    >     >>>>>                 knows this stuff better than I do
    >     >>>>>
    >     >>>>>                 cheers
    >     >>>>>                 Bruce
    >     >>>>>
    >     >>>>>
    >     >>>>>
    >     >>>>>                  On Sun, 8 Apr 2018, srishti goel wrote:
    >     >>>>>
    >     >>>>>                     When I type this
    command:tkregisterfv --mov
    >     >>>>>  negative_allsocial_proportion.nii --regheader --s
    >     >>>>>  mni152_subject --surfs --reg
    >     reg.deleteme.dat
    >     >>>>>
    >     >>>>>                     It gives me the error: cannot find
    >     mni152_subject.
    >     >>>>>  Although I clearly checked that the
    >     directory
    >     >>>>>                     from which I am submitting this
    command
    >     has the
    >     >>>>>  mni152_subject directory within which there
    >     >>>>>                     are all the other required
    directories such
    >     >>>>>                     as: mri,
    >     >>>>>                     stats, surf, scripts, etc.
    >     >>>>>
    >     >>>>>                     I am unsure what is happening here.
    >     >>>>>
    >     >>>>>
    >     >>>>>                     Best,
    >     >>>>>  Srishti
    >     >>>>>  Social/Clinical Research Specialist
    >     >>>>>                     Child Imaging Research and Life
    >     Experiences Lab
    >     >>>>>  University of North Carolina at Chapel Hill
    >     >>>>>                     email (W): srishtig@email.unc.edu
    <mailto:srishtig@email.unc.edu>
    >     <mailto:srishtig@email.unc.edu <mailto:srishtig@email.unc.edu>>
    >     >>>>>  <mailto:srishtig@email.unc.edu
    <mailto:srishtig@email.unc.edu>
    >     <mailto:srishtig@email.unc.edu <mailto:srishtig@email.unc.edu>>>
    >     >>>>>                    skype: srishti.goel12
    >     >>>>>
    >     >>>>>
    >     >>>>>                     On Thu, Apr 5, 2018 at 12:49 PM,
    Douglas N.
    >     >>>>>                     Greve <dgreve@mgh.harvard.edu
    <mailto:dgreve@mgh.harvard.edu>
    >     <mailto:dgreve@mgh.harvard.edu <mailto:dgreve@mgh.harvard.edu>>
     >     >>>>>  <mailto:dgreve@mgh.harvard.edu
    <mailto:dgreve@mgh.harvard.edu>
    >     <mailto:dgreve@mgh.harvard.edu
    <mailto:dgreve@mgh.harvard.edu>>>> wrote:
    >     >>>>> Those commands look ok. My suspicion
    >     >>>>>                     goes to the use of --regheader. See
    >     >>>>> whether the registration is ok with
    >     >>>>>
    >     >>>>>  tkregisterfv --mov
    >     >>>>>  negative_allsocial_proportion.nii --regheader --s
    >     >>>>>  mni152_subject --surfs --reg
    >     reg.deleteme.dat
    >     >>>>>
    >     >>>>>
    >     >>>>> On 04/05/2018 08:34 AM, srishti
    >     goel wrote:
    >     >>>>> > Hi,
    >     >>>>> >
    >     >>>>> > I am trying to compare my volume
    >     maps
    >     >>>>> >
    >     (negative_allsocial_proportion.nii) to
    >     >>>>>  someone else's
    >     >>>>> > (SN_like_cortical_lh.nii.gz) who
    >     have
    >     >>>>>                     it on a surface
    >     >>>>> > (mni152_subject). So I used the
    >     steps
    >     >>>>>                     for mri_vol2surf command as
    >     >>>>> > follows:
    >     >>>>> >
    >     >>>>> > Commands:
    >     >>>>> > mri_vol2surf --src
    >     >>>>>  negative_allsocial_proportion.nii --regheader
    >     >>>>> > mni152_subject --hemi lh --o
    >     >>>>>  ./neg_allsocial_lh.nii --projfrac 0.5
    >     >>>>> > Then to view it:
    >     >>>>> > tksurfer mni152_subject lh inflated
    >     >>>>>  -overlay ./neg_allsocial_lh.nii
    >     >>>>> > -overlay SN_like_cortical_lh.nii.gz
    >     >>>>>  -fthresh 0.5
    >     >>>>> >
    >     >>>>> > Everything ran fine and we
    >     didn't get
    >     >>>>>                     any error but then while viewing
    >     >>>>> > the files we could not see our map
    >     >>>>>  (neg_allsocail_lh.nii) on the
    >     >>>>> > surface. This file seemed to
    >     work fine
    >     >>>>>                     as it is not an empty file when
    >     >>>>> > I checked the file size.
    >     However, when
    >     >>>>>                     we view it using tksurfer it
    >     >>>>> > does not show up as a highlighted
    >     >>>>>  portion on the surface. The
    >     >>>>> > SN_like_cortical_lh.nii.gz file
    >     shows
    >     >>>>>                     up just fine.
    >     >>>>> >
    >     >>>>> > Could someone please help me figure
    >     >>>>>                     out what might have gone wrong here.
    >     >>>>> >
    >     >>>>> > Thanks so much!
    >     >>>>> >
    >     >>>>> >
    >     >>>>> >
    >     >>>>>                     >
    >     _______________________________________________
    >     >>>>>                     > Freesurfer mailing list
    >     >>>>>                     > Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     >>>>>  <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
    >     >>>>>                     >
    >     >>>>>
    https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
    >     >>>>>                   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
    >     >>>>>
    >     >>>>>  _______________________________________________
    >     >>>>>  Freesurfer mailing list
    >     >>>>> Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     >>>>>  <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
    >     >>>>>
    https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
    >     >>>>>                  
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
    >     >>>>>
    >     >>>>>
    >     >>>>>                     The information in this e-mail is
    intended
    >     >>>>>                     only for the person to whom it is
    >     >>>>>  addressed. If you believe this e-mail
    >     was sent
    >     >>>>>                     to you in error and the e-mail
    >     >>>>>                     contains patient information,
    please contact
    >     >>>>>                     the Partners Compliance HelpLine at
    >     >>>>> http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>
    >     <http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>>
    >     >>>>>                   
     <http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>
    >     <http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>>> . If
    >     >>>>>                     the e-mail was sent to you in error
    >     >>>>>                     but does not contain patient
    information,
    >     >>>>>                     please contact the sender and properly
    >     >>>>>                     dispose of the e-mail.
    >     >>>>>
    >     >>>>>
    >     >>>>>
    >     >>>>>
    >     >>>>>  _______________________________________________
    >     >>>>>                 Freesurfer mailing list
    >     >>>>> Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     >>>>>  <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
    >     >>>>>
    https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
    >     >>>>>              
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
    >     >>>>>
    >     >>>>>
    >     >>>>>                 The information in this e-mail is
    intended only
    >     >>>>>                 for the person to whom it is
    >     >>>>>                 addressed. If you believe this e-mail was
    >     sent to
    >     >>>>>                 you in error and the e-mail
    >     >>>>>                 contains patient information, please
    contact the
    >     >>>>>                 Partners Compliance HelpLine at
    >     >>>>> http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>
    >     <http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>>
    >     >>>>>               
     <http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>
    >     <http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>>> . If the
    >     >>>>>                 e-mail was sent to you in error
    >     >>>>>                 but does not contain patient
    information, please
    >     >>>>>                 contact the sender and properly
    >     >>>>>                 dispose of the e-mail.
    >     >>>>>
    >     >>>>>
    >     >>>>>  _______________________________________________
    >     >>>>>             Freesurfer mailing list
    >     >>>>> Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     >>>>>             <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
    >     >>>>>
    https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
    >     >>>>>           
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
    >     >>>>
    >     >>>>
    >     >>>>  _______________________________________________
    >     >>>>             Freesurfer mailing list
    >     >>>> Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     >>>>             <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
    >     >>>>
    https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
    >     >>>>           
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
    >     >>>
    >     >>>
    >     >>>  _______________________________________________
    >     >>>             Freesurfer mailing list
    >     >>> Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     >>>             <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
    >     >>>
    https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
    >     >>>             <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
    >     >>>
    >     >>>
    >     >>>             The information in this e-mail is intended only
    >     for the
    >     >>>             person to whom it is
    >     >>>             addressed. If you believe this e-mail was
    sent to
    >     you in
    >     >>>             error and the e-mail
    >     >>>             contains patient information, please contact the
    >     >>>             Partners Compliance HelpLine at
    >     >>> http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>
    >     <http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>>
    >     >>>             <http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>
    >     <http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>>> . If the e-mail
    >     >>>             was sent to you in error
    >     >>>             but does not contain patient information, please
    >     contact
    >     >>>             the sender and properly
    >     >>>             dispose of the e-mail.
    >     >>>
    >     >>>
    >     >>>
    >     >>>
    >     >>>  _______________________________________________
    >     >>>         Freesurfer mailing list
    >     >>> Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     >>>         <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
    >     >>>
    https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
    >     >>>       
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
    >     >>
    >     >>
    >     >>         _______________________________________________
    >     >>         Freesurfer mailing list
    >     >> Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     >>         <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
    >     >>
    https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
    >     >>         <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>
    >     >>
    >     >>
    >     >>         The information in this e-mail is intended only
    for the
    >     >>         person to whom it is
    >     >>         addressed. If you believe this e-mail was sent to
    you in
    >     >>         error and the e-mail
    >     >>         contains patient information, please contact the
    Partners
    >     >>         Compliance HelpLine at
    >     >> http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>
    >     <http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>>
    >     >>         <http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>
    >     <http://www.partners.org/complianceline
    <http://www.partners.org/complianceline>>> . If the e-mail was
    >     >>         sent to you in error
    >     >>         but does not contain patient information, please
    >     contact the
    >     >>         sender and properly
    >     >>         dispose of the e-mail.
    >     >>
    >     >>
    >     >>
    >     >>
    >     >>     _______________________________________________
    >     >>     Freesurfer mailing list
    >     >> Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>
    >     >>     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>
    >     <mailto:Freesurfer@nmr.mgh.harvard.edu
    <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
    >     >>
    https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
    >   
     <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
    <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>
...

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