Hi, thank you. I am using Linux. I not sure where to change path, ie which file this should be done in and where this file is located. This the error message I recieve, and as I said It is launching the wrong matlab and I don't know how change this.

Launching Matlab7p13

Warning: Unable to open display 'iconic'. You will not be able to display graphics on the screen.

< M A T L A B (R) >

Copyright 1984-2011 The MathWorks, Inc.

R2011b (7.13.0.564) 32-bit (glnx86)

August 13, 2011

To get started, type one of these: helpwin, helpdesk, or demo.

For product information, visit www.mathworks.com.

>> reading filled volume...

closing volume...

Undefined function 'fspecial' for input arguments of type 'char'.

Error in make_outer_surface (line 31)

Gaussian = fspecial('gaussian',[2 2],1);

>>

ERROR: make_outer_surface did not create output file '/x/x/x/x/2/x/x/x/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer'!

Linux 2.6.32-358.2.1.el6.x86_64 #1 SMP Tue Mar 12 14:18:09 CDT 2013 x86_64 x86_64 x86_64 GNU/Linux

recon-all -s subj exited with ERRORS at Wed Oct 23 08:20:58 BST 2013


Thank you very much for your time and help,


Kind Regards,Linn




On Tue, Oct 22, 2013 at 10:50 PM, Marie Schaer <Marie.Schaer@unige.ch> wrote:

Hi Linn,

Sorry for the delay in answering. The path has to be set directly in your environment variable (the variable $PATH has to point to the correct version). I need a few more details about what you tried and which OS you are using to be able to help you. 

If you are using mac, here is an example on how you can set the path in the .shrc file:
setenv PATH $PATH":/Applications/MATLAB_R2013b.app/bin"

You can also have a look at the following posts:

Let me know how it goes,

Marie


On Oct 22, 2013, at 2:41 AM, Linn Mittlestein <linnmittle@gmail.com>
 wrote:

Hi,

I am trying to compute lgi measures, and I think my problem lies in the fact that the matlab path is not set correctly; it is calling an older version of matlab however I need it to point to matlab2013b. I have tried numerous things like changing the startup.m file, the .bashrc file and exporting the matlab path, however It keeps calling another version of Matlab. Can someone please tell me how exactly the path is set and where?

Best Wishes and thank you,

Linn

---------- Forwarded message ----------
From: Linn Mittlestein <linnmittle@gmail.com>
Date: Mon, Oct 21, 2013 at 9:33 AM
Subject: Fwd: LGI path problem
To: freesurfer@nmr.mgh.harvard.edu



From: Linn Mittlestein <linnmittle@gmail.com>Date: Fri, Oct 18, 2013 at 1:30 PM
Subject: LGI path problem
To: freesurfer@nmr.mgh.harvard.edu



Hi,

I am trying to compute lgi measures, and I think my problem lies in the fact that the matlab path is not set correctly; it is calling an older version of matlab however I need it to point to matlab2013b. I have tried numerous things like changing the startup.m file, the .bashrc file and exporting the matlab path, however It keeps calling another version of Matlab. Can someone please tell me how exactly the path is set and where?

Best Wishes and thank you,

Linn


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