can you see what aseg*.mgz volumes there are in your mri dir?
On Thu, 29 May 2008, Sky Raptentsetsang wrote:

Hello,
I am re-running edited data through -autorecon2-cp and during the
mri_fill script I receive the following error message:
#@# Fill Tue May 27 09:44:29 PDT 2008
/cind/00/PCDv4/Freesurfer/subjects/P018-1/mri
 mri_fill -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta
-segmentation aseg.auto_noCCseg.mgz wm.mgz filled.mgz
logging cutting plane coordinates to ../scripts/ponscc.cut.log...
INFO: Using transforms/talairach.lta and its offset for Talairach volume
...
using segmentation aseg.auto_noCCseg.mgz...
reading input volume...done.
searching for cutting planes...voxel to talairach voxel transform
 0.956  -0.049   0.061  -5.626;
 0.029   1.045   0.352  -16.780;
-0.078  -0.277   0.950   31.426;
 0.000   0.000   0.000   1.000;
mri_fill: could not read segmentation from aseg.auto_noCCseg.mgz
reading segmented volume aseg.auto_noCCseg.mgz...
ERROR: cannot find
/cind/00/PCDv4/Freesurfer/subjects/P018-1/mri/aseg.auto_noCCseg.mgz
No such file or directory
Linux polaris.v21.med.va.gov 2.6.20-1.2307.fc5 #1 SMP Sun Mar 18 20:58:09
EDT 2007 x86_64 x86_64 x86_64 GNU/Linux
recon-all exited with ERRORS at Tue May 27 09:44:34 PDT 2008

In this directory there is a aseg.auto_CCseg.mgz file, but no
aseg.auto_noCCseg.mgz file.
This data was originally processed with FSv4.0.2 and then edited and we
upgraded to the latest v4.0.4.
Can anyone tell me what the difference between the *_CCseg.mgz and
*_noCCseg.mgz file is? and how I can proceed?

Thanks in advance for any help!

Sky Raptentsetsang
Staff Research Associate
CIND, San Francisco VAMC
Department of Radiology, UCSF
4150 Clement St. Bldg. 13, 2nd Floor, Mail Stop 114M
San Francisco, CA 94121
Phone 415.221.4810 ext. 4186
Fax 415.386.3954

Sky Raptentsetsang

Staff Research Associate
CIND, San Francisco VAMC
Department of Radiology, UCSF
4150 Clement St. Bldg. 13, 2nd Floor, Mail Stop 114M
San Francisco, CA 94121
Phone 415.221.4810 ext. 4186
Fax 415.386.3954