look in the recon-all -help output
On Wed, 24 Oct 2012, pietro de rossi wrote:
ok,
how do I get a list of all the commands after mrsi_make_surface?
2012/10/24 Bruce Fischl <fischl@nmr.mgh.harvard.edu>
Hi Pietro,
I don't think we've setup a pipeline for that yet. You'll need
to rerun the individual commands after mris_make_surfaces
(including mris_thickness to regenerate the thickness maps)
cheers
Bruce
On Wed, 24 Oct 2012, pietro de rossi wrote:
Hi FreeSurfer people,
I'm considering editing through direct repositioning in
freeview (under
tools->reposition surface) for some scans.
After that, do I need to rerun everything through the
whole recon-all
pipeline? What would be the command line for that?
Thank you very much,
Pietro
--
Pietro De Rossi, MD
-------------------------------------
Sapienza Università di Roma, Facoltà di Medicina e
Psicologia, Dipartimento
NESMOS (Neuroscienze, Salute Mentale, Organi di Senso),
Ospedale
Sant'Andrea, Via di Grottarossa 1035-1039, 00189 Roma
NESMOS Department (Neurosciences, Mental Health and
Sensory Functions),
School of Medicine and Psychology, Sapienza University,
Sant?Andrea Hospital,
Via di Grottarossa 1035-1039, 00189 Rome, Italy
Neurobehavioral Clinical Research Section, Social and Behavioral
Research
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National
Institutes of Health (NIH), Bethesda, Maryland 20892, USA
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Pietro De Rossi, MD
-------------------------------------
Sapienza Università di Roma, Facoltà di Medicina e Psicologia, Dipartimento
NESMOS (Neuroscienze, Salute Mentale, Organi di Senso), Ospedale
Sant'Andrea, Via di Grottarossa 1035-1039, 00189 Roma
NESMOS Department (Neurosciences, Mental Health and Sensory Functions),
School of Medicine and Psychology, Sapienza University, Sant?Andrea Hospital,
Via di Grottarossa 1035-1039, 00189 Rome, Italy
Neurobehavioral Clinical Research Section, Social and Behavioral Research
Branch, National Human Genome Research Institute (NHGRI), National
Institutes of Health (NIH), Bethesda, Maryland 20892, USA