Sorry, I'm not sure I understand. You want the lobes annotation but you
want to merge the cingulate with the frontal? After you run the 1st
mri_annotation2label, run it again with the lobes as the input
annotation and specifying --outdir to break up the annotation into
labels. Then run your mergelabels command to merge cingulate with
frontal. Then run mris_label2annot to create a new annotation with the
merged labels.

On 08/03/2018 05:40 PM, Fernanda Hansen P. de Moraes wrote:
>
>         External Email - Use Caution
>
> Dear FreeSurfer experts,
>
> I want to get with mris_anatomical_stats the stats from the four
> lobes, Frontal, Parietal, Temporal and Occipital as suggest here
> (https://surfer.nmr.mgh.harvard.edu/fswiki/CorticalParcellation), but
> without the cingulate.
>
> I am trying to use the mri_mergelabels to merge that labels:
> Rostral Anterior (Frontal)
> Caudal Anterior (Frontal)
> Posterior (Parietal)
> Isthmus (Parietal)
> in their lobes, but I am facing some difficulties. I am sorry if this
> is a basic question, but I couldn't find an example that worked for me
> in the mail archive.
>
> I am following these steps:
>
> mri_annotation2label --subject PRI002 --hemi lh --lobesStrict
> lh.lobesStrict.annot
> mri_mergelabels -i lh.frontal -i lh.rostralanteriorcingulate -i
> lh.caudalanteriorcingulate -o lh.frontal
>
> Is there an easier way to do it?
>
> Thank you very much in advance,
> Fernanda Hansen P. de Moraes
>
> --
> Fernanda Hansen P. de Moraes
>
> Física Médica | Rede D'Or São Luiz
> Doutoranda em Ciências Médicas | Instituto D'Or de Pesquisa e Ensino
>
>
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