> Date: Tue, 11 Jun 2013 11:02:26 -0400
> From: zkaufman@nmr.mgh.harvard.edu
> To: pablonajt@hotmail.com
> CC: freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] environment variable FREESURFER_HOME
>
> Pablo,
>
> The .cshrc and .bashrc files we are referring to are not Freesurfer files
> and do not come with the Freesurfer distribution. They are files that can
> (although not always) exist in the home directory of your computer.
>
> Do not modify the the .csh or .sh files that come with Freesurfer. That is
> for the expert user.
>
> If you want to use Freesurfer just open a command line and type the
> following:
>
> (if using csh)
> setenv FREESURFER_HOME Applications/freesurfer
> source $FREESURFER_HOME/SetUpFreeSurfer.csh
>
> (if using bash)
> export FREESURFER_HOME=/Applications/freesurfer
> source $FREESURFER_HOME/SetUpFreeSurfer.sh
>
> If you dont want to type these commands everytime you want to start using
> freesurfer than you can add these lines to your .csh and .bashrc *in your
> home directory*. If those files do not exist than you may create them *in
> your home directory* and simply add those two lines to the file.
>
> -Zeke
>
>
>
>
> > Dear Freesurfer experts,
> > I am trying to install free surfer.
> > It seems that my downloaded version does not have a .cshrc file. I only
> > have an .sh and .csh file.
> > All the edits (i.e.,setenv FREESURFER_HOME Applications/freesurfer/ source
> > Applications/freesurfer/SetUpFreeSurfer.csh) that I tried to the .csh file
> > give me "command not found".
> >
> > Any suggestion would be highly appreciated.
> > Pablo
> >
>
>
>
> > Thank you for your response.
> > It seems that my downloaded version does not have a .cshrc file. I only
> > have an .sh and a .csh.
> > What would you recommend to do? Should I reinstall FreeSurfer?
> > Thanks.
> > Pablo
> >
> >> Date: Fri, 7 Jun 2013 18:16:56 -0400
> >> From: zkaufman@nmr.mgh.harvard.edu
> >> To: pablonajt@hotmail.com
> >> Subject: Re: [Freesurfer] environment variable FREESURFER_HOME
> >>
> >> There should be a file called ".cshrc" in your home directory. Add the
> >> two lines to that file.
> >>
> >> -Zeke
> >>
> >> On 06/07/2013 05:53 PM, pablo najt wrote:
> >> > Can anyone advice me on how to set the environment variable
> >> > FREESURFER_HOME for installing it in OS X 10.6.8 (with XQuartz
> >> installed)?
> >> >
> >> > My directory for Freesurfer:*/Applications/freesurfer*
> >> > *
> >> > *
> >> > I know I also have to add:
> >> >
> >> > setenv FREESURFER_HOME /Applications/freesurfer
> >> >
> >> > source $FREESURFER_HOME/SetUpFreeSurfer.csh
> >> > But I am not sure where exactly I should add these lines.
> >> >
> >> > Do I need to edit the .csh file in Freesurfer.
> >> >
> >> > How should I do this? using Text Edit from apple would work?
> >> > Thanks,
> >> > Pablo
> >> >
> >> >
> >> >
> >> >
> >> > _______________________________________________
> >> > Freesurfer mailing list
> >> > Freesurfer@nmr.mgh.harvard.edu
> >> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> >> >
> >>
> >>
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>
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