Hi Bruce

I am new to freesurfer and im having a few issues with a number of my scans.  The cerebellum and sections of the occipital lobe seems to be cut off on a number of subjects, so i went in and altered the skull stripping by increasing the watershed threshold to 35 and using -no-wsgcaatlas.  When i review the scans afterwards, the pial and WM surfaces haven't included the original missing sections of the scans.  How do i go back and include these missing sections?

I have attached a screenshots.

Thank you kindly

Julia


Julia Hill
Research Assistant

School of Psychiatry

University of New South Wales

Previously Prince of Wales Medical Research Institute

www.NeuRA.edu.au
Barker Street Randwick Sydney NSW 2031 Australia
PO Box 1165 Randwick Sydney NSW 2031 Australia
T +61 2 9399 1268