Dear Jaime,
This is indeed a funny error. The left side runs to completion, and then the right side dies right away…
Is the problem reproducible? Does it happen with other subjects, too?
Kind regards,
/Eugenio
--
Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
http://www.jeiglesias.com
From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Jaime Gomez <borriquear@gmail.com>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Wednesday, 29 May 2019 at 03:52
To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] longitudinal subfields exited with ERRORS
External Email - Use Caution
Hello FreeSurfer Developers,
I'm trying to run segmentHA_T1_long.sh
ERROR: MATLAB is exiting because of fatal error
/Applications/freesurfer/bin/run_SegmentSubfieldsT1Longitudinal.sh: line 37: 49858 Killed: 9
"${exe_dir}"/SegmentSubfieldsT1Longitudinal.app/Contents/MacOS/SegmentSubfieldsT1Longitudinal $args
Darwin jaimes-Mac-Pro.local 18.2.0 Darwin Kernel Version 18.2.0:
Fri Oct 5 19:41:49 PDT 2018; root:xnu-4903.221.2~2/RELEASE_X86_64 x86_64
longitudinal subfields exited with ERRORS at Tue May 28 17:53:02 CEST 2019
I've searched the list and no similar errors have been reported.
Does anyone have any thoughts on how to trouble-shoot this one?
Also, Ive attached the recon-all.log in case it's of any use.
1) freesurfer-darwin-OSX-ElCapitan-dev-20190328-6241d26
2) Platform: macOS 10.14.1 (18B75)
3) Darwin jaimes-Mac-Pro.local 18.2.0 Darwin Kernel Version 18.2.0:
Fri Oct 5 19:41:49 PDT 2018; root:xnu-4903.221.2~2/RELEASE_X86_64 x86_64:16 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux
4) long-hippocampal-subfields-T1.log: see attached